Package evaluation of Stheno on Julia 1.13.0-DEV.1222 (39e1473f3b*) started at 2025-09-30T17:40:48.475 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.74s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.2 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.14.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.1 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.92s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 62.72s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_fw4HkI/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.33 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_fw4HkI/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.2 [a9b6321e] Atomix v1.1.2 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.26.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.1 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.14.0 [26cc04aa] FiniteDifferences v0.12.33 [f6369f11] ForwardDiff v1.2.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.5 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.38 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.2 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.37+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 1891.1 ms ✓ StructArrays 8526.5 ms ✓ KernelAbstractions 6952.0 ms ✓ ForwardDiff 1835.7 ms ✓ StructArrays → StructArraysSparseArraysExt 1751.2 ms ✓ StructArrays → StructArraysLinearAlgebraExt 907.8 ms ✓ StructArrays → StructArraysAdaptExt 1789.3 ms ✓ StructArrays → StructArraysStaticArraysExt 2695.0 ms ✓ KernelAbstractions → SparseArraysExt 1748.8 ms ✓ KernelAbstractions → LinearAlgebraExt 1783.3 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 1470.6 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 8796.5 ms ✓ ChainRules 13692.3 ms ✓ GPUArrays 59958.3 ms ✓ Zygote 14 dependencies successfully precompiled in 115 seconds. 92 already precompiled. Precompiling packages... 12132.2 ms ✓ Zygote → ZygoteDistancesExt 1 dependency successfully precompiled in 13 seconds. 110 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#140` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 16m48.2s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1016s / 99.2% 29.0GiB / 99.5% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 659s 65.4% 659s 20.2GiB 70.1% 20.2GiB addition 1 396s 39.3% 396s 11.7GiB 40.4% 11.7GiB Standardised Tests (correlated sum) 1 218s 21.7% 218s 6.36GiB 22.0% 6.36GiB adj_ad 9 23.1s 2.3% 2.56s 1.00GiB 3.5% 114MiB adj_fd 9 8.86s 0.9% 984ms 310MiB 1.0% 34.5MiB Standardised Tests (independent sum) 1 129s 12.8% 129s 5.02GiB 17.4% 5.02GiB adj_ad 9 25.5s 2.5% 2.83s 1.23GiB 4.3% 140MiB adj_fd 9 9.90s 1.0% 1.10s 294MiB 1.0% 32.7MiB Correlated GPs 1 45.7s 4.5% 45.7s 272MiB 0.9% 272MiB Consistency Tests 1 19.1s 1.9% 19.1s 117MiB 0.4% 117MiB Verify mean / kernel numerically 1 2.80s 0.3% 2.80s 39.5MiB 0.1% 39.5MiB Consistency Tests 1 1.53s 0.2% 1.53s 12.3MiB 0.0% 12.3MiB product 1 114s 11.3% 114s 3.92GiB 13.6% 3.92GiB multiply by function 1 65.9s 6.5% 65.9s 2.09GiB 7.2% 2.09GiB Diff Tests 1 37.1s 3.7% 37.1s 1.58GiB 5.5% 1.58GiB adj_ad 9 14.6s 1.4% 1.62s 874MiB 3.0% 97.1MiB adj_fd 9 4.53s 0.4% 503ms 113MiB 0.4% 12.5MiB Consistency Tests 1 4.11s 0.4% 4.11s 101MiB 0.3% 101MiB multiply by constant 1 47.7s 4.7% 47.7s 1.83GiB 6.3% 1.83GiB Diff Tests 1 36.3s 3.6% 36.3s 1.78GiB 6.2% 1.78GiB adj_ad 9 11.9s 1.2% 1.33s 800MiB 2.7% 88.9MiB adj_fd 9 8.00s 0.8% 889ms 288MiB 1.0% 32.0MiB Consistency Tests 1 2.71s 0.3% 2.71s 17.4MiB 0.1% 17.4MiB GP mul errors 1 12.2ms 0.0% 12.2ms 40.7KiB 0.0% 40.7KiB compose 1 72.9s 7.2% 72.9s 2.39GiB 8.3% 2.39GiB general 1 47.8s 4.7% 47.8s 1.56GiB 5.4% 1.56GiB Diff Tests 1 42.3s 4.2% 42.3s 1.51GiB 5.2% 1.51GiB adj_ad 9 13.1s 1.3% 1.45s 737MiB 2.5% 81.9MiB adj_fd 9 4.98s 0.5% 554ms 115MiB 0.4% 12.8MiB Consistency Tests 1 4.11s 0.4% 4.11s 34.1MiB 0.1% 34.1MiB Stretch 1 20.3s 2.0% 20.3s 748MiB 2.5% 748MiB scalar stretch 1 19.8s 2.0% 19.8s 735MiB 2.5% 735MiB scalar input 1 19.0s 1.9% 19.0s 732MiB 2.5% 732MiB adj_fd 9 7.12s 0.7% 791ms 276MiB 0.9% 30.7MiB adj_ad 9 2.56s 0.3% 285ms 142MiB 0.5% 15.8MiB vector input 1 716ms 0.1% 716ms 3.21MiB 0.0% 3.21MiB Vector stretch 1 449ms 0.0% 449ms 9.77MiB 0.0% 9.77MiB Matrix stretch 1 100ms 0.0% 100ms 2.98MiB 0.0% 2.98MiB Shift 1 2.55s 0.3% 2.55s 39.3MiB 0.1% 39.3MiB Shift{Vector{Float64}} 1 1.42s 0.1% 1.42s 14.1MiB 0.0% 14.1MiB Shift{Float64} 1 1.14s 0.1% 1.14s 25.2MiB 0.1% 25.2MiB Select 1 1.23s 0.1% 1.23s 31.3MiB 0.1% 31.3MiB evaluation 1 563ms 0.1% 563ms 20.2MiB 0.1% 20.2MiB idx isa Vector 1 394ms 0.0% 394ms 7.68MiB 0.0% 7.68MiB idx isa Integer 1 275ms 0.0% 275ms 3.36MiB 0.0% 3.36MiB Periodic 1 953ms 0.1% 953ms 33.0MiB 0.1% 33.0MiB cross 1 31.3s 3.1% 31.3s 1.43GiB 5.0% 1.43GiB block arrays 1 17.2s 1.7% 17.2s 807MiB 2.7% 807MiB Stheno._collect ∘ _mortar 1 14.3s 1.4% 14.3s 682MiB 2.3% 682MiB BlockMatrix 1 7.49s 0.7% 7.49s 386MiB 1.3% 386MiB adj_fd 1 997ms 0.1% 997ms 131MiB 0.4% 131MiB adj_ad 1 55.5ms 0.0% 55.5ms 2.36MiB 0.0% 2.36MiB BlockVector 1 6.82s 0.7% 6.82s 297MiB 1.0% 297MiB adj_fd 1 818ms 0.1% 818ms 12.3MiB 0.0% 12.3MiB adj_ad 1 231ms 0.0% 231ms 15.8MiB 0.1% 15.8MiB fdm stuff 1 2.89s 0.3% 2.89s 125MiB 0.4% 125MiB Correctness tests 1 8.29s 0.8% 8.29s 426MiB 1.4% 426MiB Standardised Tests 1 5.77s 0.6% 5.77s 232MiB 0.8% 232MiB gp 1 189s 18.8% 189s 4.50GiB 15.6% 4.50GiB adj_ad 2 21.2s 2.1% 10.6s 834MiB 2.8% 417MiB sparse gp 1 19.9s 2.0% 19.9s 389MiB 1.3% 389MiB SparseFiniteGP inference 1 14.4s 1.4% 14.4s 265MiB 0.9% 265MiB SparseFiniteGP methods 1 5.06s 0.5% 5.06s 119MiB 0.4% 119MiB SparseFiniteGP Constructors 1 400ms 0.0% 400ms 4.12MiB 0.0% 4.12MiB gp 1 18.2s 1.8% 18.2s 363MiB 1.2% 363MiB GP 1 17.9s 1.8% 17.9s 360MiB 1.2% 360MiB independent GPs 1 322ms 0.0% 322ms 2.59MiB 0.0% 2.59MiB wrapped AbstractGP 1 12.9ms 0.0% 12.9ms 288KiB 0.0% 288KiB adj_fd 2 2.97s 0.3% 1.49s 42.0MiB 0.1% 21.0MiB derived_gp 1 176μs 0.0% 176μs 1.92KiB 0.0% 1.92KiB gaussian_process_probabilistic_programme 1 98.9s 9.8% 98.9s 2.23GiB 7.7% 2.23GiB Zygote 1 20.1s 2.0% 20.1s 0.97GiB 3.4% 0.97GiB nested gppp 1 10.6s 1.1% 10.6s 78.4MiB 0.3% 78.4MiB External Consistency 1 10.3s 1.0% 10.3s 92.2MiB 0.3% 92.2MiB split 1 480ms 0.0% 480ms 11.5MiB 0.0% 11.5MiB gppp macro 1 42.7ms 0.0% 42.7ms 583KiB 0.0% 583KiB doctests 1 53.9s 5.3% 53.9s 1.70GiB 5.9% 1.70GiB BlockData 1 6.48s 0.6% 6.48s 215MiB 0.7% 215MiB vcat(::GPPPInput...) 1 1.57s 0.2% 1.57s 78.7MiB 0.3% 78.7MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1160.08s PkgEval succeeded after 1259.42s