Package evaluation of TuringGLM on Julia 1.13.0-DEV.1216 (bcb9a929e5*) started at 2025-09-29T05:06:33.282 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.83s ################################################################################ # Installation # Installing TuringGLM... Resolving package versions... Installed CommonWorldInvalidations ──── v1.0.0 Installed MKL_jll ───────────────────── v2025.2.0+0 Installed DefineSingletons ──────────── v0.1.2 Installed InlineStrings ─────────────── v1.4.5 Installed Lz4_jll ───────────────────── v1.10.1+0 Installed DistributionsAD ───────────── v0.6.58 Installed OrderedCollections ────────── v1.8.1 Installed Functors ──────────────────── v0.5.2 Installed PreallocationTools ────────── v0.4.34 Installed InitialValues ─────────────── v0.3.1 Installed MixedModels ───────────────── v5.1.0 Installed AbstractPPL ───────────────── v0.13.1 Installed Optim ─────────────────────── v1.13.2 Installed ChainRules ────────────────── v1.72.5 Installed SentinelArrays ────────────── v1.4.8 Installed ArgCheck ──────────────────── v2.5.0 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed WoodburyMatrices ──────────── v1.0.0 Installed NaNMath ───────────────────── v1.1.3 Installed QuadGK ────────────────────── v2.11.2 Installed Chairmarks ────────────────── v1.3.1 Installed Tables ────────────────────── v1.12.1 Installed EnumX ─────────────────────── v1.0.5 Installed Turing ────────────────────── v0.40.3 Installed NLSolversBase ─────────────── v7.10.0 Installed Reexport ──────────────────── v1.2.2 Installed Missings ──────────────────── v1.2.0 Installed BandedMatrices ────────────── v1.9.4 Installed Jieko ─────────────────────── v0.2.1 Installed InverseFunctions ──────────── v0.1.17 Installed Static ────────────────────── v1.3.0 Installed Preferences ───────────────── v1.5.0 Installed TableTraits ───────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed MappedArrays ──────────────── v0.4.2 Installed Crayons ───────────────────── v4.1.1 Installed RangeArrays ───────────────── v0.3.2 Installed RecursiveArrayTools ───────── v3.37.1 Installed TZJData ───────────────────── v1.5.0+2025b Installed MCMCChains ────────────────── v7.4.0 Installed SortingAlgorithms ─────────── v1.2.2 Installed UnPack ────────────────────── v1.0.2 Installed ADTypes ───────────────────── v1.18.0 Installed MacroTools ────────────────── v0.5.16 Installed NaturalSort ───────────────── v1.0.0 Installed DiffResults ───────────────── v1.1.0 Installed Indexing ──────────────────── v1.1.1 Installed DataStructures ────────────── v0.18.22 Installed DensityInterface ──────────── v0.4.0 Installed CodecZstd ─────────────────── v0.8.6 Installed AbstractTrees ─────────────── v0.4.5 Installed FillArrays ────────────────── v1.14.0 Installed SparseMatrixColorings ─────── v0.4.21 Installed BSplineKit ────────────────── v0.19.1 Installed oneTBB_jll ────────────────── v2022.0.0+0 Installed ConsoleProgressMonitor ────── v0.1.2 Installed DelimitedFiles ────────────── v1.9.1 Installed ExprTools ─────────────────── v0.1.10 Installed ArrayInterface ────────────── v7.20.0 Installed StatsBase ─────────────────── v0.34.6 Installed Optimisers ────────────────── v0.4.6 Installed IntelOpenMP_jll ───────────── v2025.2.0+0 Installed TimeZones ─────────────────── v1.22.0 Installed DataValueInterfaces ───────── v1.0.0 Installed CEnum ─────────────────────── v0.5.0 Installed CommonSubexpressions ──────── v0.3.1 Installed RandomNumbers ─────────────── v1.6.0 Installed LoggingExtras ─────────────── v1.1.0 Installed GPUArraysCore ─────────────── v0.2.0 Installed RealDot ───────────────────── v0.1.0 Installed MCMCDiagnosticTools ───────── v0.3.15 Installed IrrationalConstants ───────── v0.2.4 Installed TerminalLoggers ───────────── v0.1.7 Installed AdvancedMH ────────────────── v0.8.8 Installed SparseConnectivityTracer ──── v1.1.0 Installed DynamicPPL ────────────────── v0.37.5 Installed ArrayLayouts ──────────────── v1.11.2 Installed LeftChildRightSiblingTrees ── v0.2.1 Installed SplittablesBase ───────────── v0.1.15 Installed BitIntegers ───────────────── v0.3.5 Installed L_BFGS_B_jll ──────────────── v3.0.1+0 Installed TypedTables ───────────────── v1.4.6 Installed Transducers ───────────────── v0.4.85 Installed Roots ─────────────────────── v2.2.10 Installed Interpolations ────────────── v0.16.2 Installed Scratch ───────────────────── v1.3.0 Installed Setfield ──────────────────── v1.1.2 Installed Baselet ───────────────────── v0.1.1 Installed PooledArrays ──────────────── v1.4.3 Installed PDMats ────────────────────── v0.11.35 Installed DocStringExtensions ───────── v0.9.5 Installed AxisArrays ────────────────── v0.4.8 Installed OptimizationBase ──────────── v2.11.0 Installed NamedArrays ───────────────── v0.10.4 Installed TableOperations ───────────── v1.2.0 Installed Moshi ─────────────────────── v0.3.7 Installed AdvancedVI ────────────────── v0.4.1 Installed CompositionsBase ──────────── v0.1.2 Installed CommonSolve ───────────────── v0.2.4 Installed DifferentiationInterface ──── v0.7.7 Installed ForwardDiff ───────────────── v1.2.1 Installed LBFGSB ────────────────────── v0.4.1 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed TuringGLM ─────────────────── v2.14.2 Installed RegressionFormulae ────────── v0.1.4 Installed ArrowTypes ────────────────── v2.3.0 Installed KernelDensity ─────────────── v0.6.10 Installed AliasTables ───────────────── v1.1.3 Installed StatsModels ───────────────── v0.7.7 Installed AdvancedPS ────────────────── v0.7.0 Installed StringViews ───────────────── v1.3.5 Installed SparseInverseSubset ───────── v0.1.2 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Combinatorics ─────────────── v1.0.3 Installed ConcurrentUtilities ───────── v2.5.0 Installed RecipesBase ───────────────── v1.3.4 Installed SplitApplyCombine ─────────── v1.2.3 Installed FunctionWrappersWrappers ──── v0.1.3 Installed ShiftedArrays ─────────────── v2.0.0 Installed MixedModelsDatasets ───────── v0.1.2 Installed SciMLOperators ────────────── v1.7.2 Installed MistyClosures ─────────────── v2.1.0 Installed DataAPI ───────────────────── v1.16.0 Installed InvertedIndices ───────────── v1.3.1 Installed SciMLStructures ───────────── v1.7.0 Installed StaticArraysCore ──────────── v1.4.3 Installed AbstractFFTs ──────────────── v1.5.0 Installed FastGaussQuadrature ───────── v1.0.2 Installed BangBang ──────────────────── v0.4.4 Installed StaticArrays ──────────────── v1.9.15 Installed SciMLPublic ───────────────── v1.0.0 Installed AxisAlgorithms ────────────── v1.1.0 Installed StringManipulation ────────── v0.4.1 Installed Requires ──────────────────── v1.3.1 Installed FunctionWrappers ──────────── v1.1.3 Installed LogExpFunctions ───────────── v0.3.29 Installed LogDensityProblemsAD ──────── v1.13.1 Installed DiffRules ─────────────────── v1.15.1 Installed Parsers ───────────────────── v2.8.3 Installed JSON ──────────────────────── v0.21.4 Installed PrettyTables ──────────────── v2.4.0 Installed Rmath ─────────────────────── v0.8.0 Installed FiniteDiff ────────────────── v2.28.1 Installed SciMLBase ─────────────────── v2.120.0 Installed FastClosures ──────────────── v0.3.2 Installed Distributions ─────────────── v0.25.120 Installed AdvancedHMC ───────────────── v0.8.2 Installed ZygoteRules ───────────────── v0.2.7 Installed JLLWrappers ───────────────── v1.7.1 Installed StatsFuns ─────────────────── v1.5.0 Installed OptimizationOptimJL ───────── v0.4.4 Installed StructTypes ───────────────── v1.11.0 Installed IterTools ─────────────────── v1.10.0 Installed Accessors ─────────────────── v0.1.42 Installed StatisticalTraits ─────────── v3.5.0 Installed NLopt ─────────────────────── v1.2.1 Installed CodecLz4 ──────────────────── v0.4.6 Installed MicroCollections ──────────── v0.2.0 Installed Dictionaries ──────────────── v0.4.5 Installed Libtask ───────────────────── v0.9.4 Installed Bijectors ─────────────────── v0.15.10 Installed GLM ───────────────────────── v1.9.0 Installed Adapt ─────────────────────── v4.4.0 Installed HypergeometricFunctions ───── v0.3.28 Installed RuntimeGeneratedFunctions ─── v0.5.15 Installed ConstructionBase ──────────── v1.6.0 Installed Random123 ─────────────────── v1.7.1 Installed SymbolicIndexingInterface ─── v0.3.44 Installed Compat ────────────────────── v4.18.0 Installed TranscodingStreams ────────── v0.11.3 Installed Optimization ──────────────── v4.7.0 Installed PositiveFactorizations ────── v0.2.4 Installed ProgressLogging ───────────── v0.1.5 Installed Statistics ────────────────── v1.11.1 Installed StatsAPI ──────────────────── v1.7.1 Installed StructArrays ──────────────── v0.7.1 Installed LazyArrays ────────────────── v2.6.3 Installed ExproniconLite ────────────── v0.10.14 Installed PrecompileTools ───────────── v1.3.3 Installed ProgressMeter ─────────────── v1.11.0 Installed OffsetArrays ──────────────── v1.17.0 Installed IfElse ────────────────────── v0.1.1 Installed Ratios ────────────────────── v0.4.5 Installed Parameters ────────────────── v0.12.3 Installed JSON3 ─────────────────────── v1.14.3 Installed ChainRulesCore ────────────── v1.26.0 Installed LogDensityProblems ────────── v2.1.2 Installed PtrArrays ─────────────────── v1.3.0 Installed FFTW_jll ──────────────────── v3.3.11+0 Installed IntervalSets ──────────────── v0.7.11 Installed SpecialFunctions ──────────── v2.5.1 Installed FFTW ──────────────────────── v1.10.0 Installed ScientificTypesBase ───────── v3.0.0 Installed AbstractMCMC ──────────────── v5.8.0 Installed EllipticalSliceSampling ───── v2.0.0 Installed LineSearches ──────────────── v7.4.0 Installed NLopt_jll ─────────────────── v2.10.0+0 Installed SSMProblems ───────────────── v0.5.2 Installed Mocking ───────────────────── v0.8.1 Installed ChangesOfVariables ────────── v0.1.10 Installed MLJModelInterface ─────────── v1.12.0 Installed Arrow ─────────────────────── v2.8.0 Installing 8 artifacts Installed artifact Rmath 121.9 KiB Installed artifact L_BFGS_B 45.2 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact oneTBB 435.6 KiB Installed artifact Lz4 239.7 KiB Installed artifact tzjdata 112.5 KiB Installed artifact NLopt 322.7 KiB Installed artifact FFTW 2.2 MiB Updating `~/.julia/environments/v1.13/Project.toml` [0004c1f4] + TuringGLM v2.14.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [621f4979] + AbstractFFTs v1.5.0 [80f14c24] + AbstractMCMC v5.8.0 [7a57a42e] + AbstractPPL v0.13.1 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [0bf59076] + AdvancedHMC v0.8.2 [5b7e9947] + AdvancedMH v0.8.8 [576499cb] + AdvancedPS v0.7.0 [b5ca4192] + AdvancedVI v0.4.1 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [4fba245c] + ArrayInterface v7.20.0 [4c555306] + ArrayLayouts v1.11.2 [69666777] + Arrow v2.8.0 [31f734f8] + ArrowTypes v2.3.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [093aae92] + BSplineKit v0.19.1 [aae01518] + BandedMatrices v1.9.4 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [76274a88] + Bijectors v0.15.10 [c3b6d118] + BitIntegers v0.3.5 [fa961155] + CEnum v0.5.0 [082447d4] + ChainRules v1.72.5 [d360d2e6] + ChainRulesCore v1.26.0 [0ca39b1e] + Chairmarks v1.3.1 [9e997f8a] + ChangesOfVariables v0.1.10 [5ba52731] + CodecLz4 v0.4.6 [6b39b394] + CodecZstd v0.8.6 [861a8166] + Combinatorics v1.0.3 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.0 [a33af91c] + CompositionsBase v0.1.2 [f0e56b4a] + ConcurrentUtilities v2.5.0 [88cd18e8] + ConsoleProgressMonitor v0.1.2 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [b429d917] + DensityInterface v0.4.0 [85a47980] + Dictionaries v0.4.5 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.7 [31c24e10] + Distributions v0.25.120 [ced4e74d] + DistributionsAD v0.6.58 [ffbed154] + DocStringExtensions v0.9.5 [366bfd00] + DynamicPPL v0.37.5 [cad2338a] + EllipticalSliceSampling v2.0.0 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7a1cc6ca] + FFTW v1.10.0 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.0.2 [1a297f60] + FillArrays v1.14.0 [6a86dc24] + FiniteDiff v2.28.1 [f6369f11] + ForwardDiff v1.2.1 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [38e38edf] + GLM v1.9.0 [46192b85] + GPUArraysCore v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [313cdc1a] + Indexing v1.1.1 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.5 [a98d9a8b] + Interpolations v0.16.2 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [ae98c720] + Jieko v0.2.1 [5ab0869b] + KernelDensity v0.6.10 [5be7bae1] + LBFGSB v0.4.1 [b964fa9f] + LaTeXStrings v1.4.0 [5078a376] + LazyArrays v2.6.3 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 [6f1fad26] + Libtask v0.9.4 [d3d80556] + LineSearches v7.4.0 [6fdf6af0] + LogDensityProblems v2.1.2 [996a588d] + LogDensityProblemsAD v1.13.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [c7f686f2] + MCMCChains v7.4.0 [be115224] + MCMCDiagnosticTools v0.3.15 [e80e1ace] + MLJModelInterface v1.12.0 [1914dd2f] + MacroTools v0.5.16 [dbb5928d] + MappedArrays v0.4.2 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [dbe65cb8] + MistyClosures v2.1.0 [ff71e718] + MixedModels v5.1.0 [7e9fb7ac] + MixedModelsDatasets v0.1.2 [78c3b35d] + Mocking v0.8.1 [2e0e35c7] + Moshi v0.3.7 [d41bc354] + NLSolversBase v7.10.0 [76087f3c] + NLopt v1.2.1 [77ba4419] + NaNMath v1.1.3 [86f7a689] + NamedArrays v0.10.4 [c020b1a1] + NaturalSort v1.0.0 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [3bd65402] + Optimisers v0.4.6 [7f7a1694] + Optimization v4.7.0 [bca83a33] + OptimizationBase v2.11.0 [36348300] + OptimizationOptimJL v0.4.4 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 ⌅ [08abe8d2] + PrettyTables v2.4.0 [33c8b6b6] + ProgressLogging v0.1.5 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.37.1 [189a3867] + Reexport v1.2.2 [545c379f] + RegressionFormulae v0.1.4 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [f2b01f46] + Roots v2.2.10 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 ⌅ [26aad666] + SSMProblems v0.5.2 [0bca4576] + SciMLBase v2.120.0 [c0aeaf25] + SciMLOperators v1.7.2 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [30f210dd] + ScientificTypesBase v3.0.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [9f842d2f] + SparseConnectivityTracer v1.1.0 [dc90abb0] + SparseInverseSubset v0.1.2 [0a514795] + SparseMatrixColorings v0.4.21 [276daf66] + SpecialFunctions v2.5.1 [03a91e81] + SplitApplyCombine v1.2.3 [171d559e] + SplittablesBase v0.1.15 [aedffcd0] + Static v1.3.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [3eaba693] + StatsModels v0.7.7 [892a3eda] + StringManipulation v0.4.1 [354b36f9] + StringViews v1.3.5 [09ab397b] + StructArrays v0.7.1 [856f2bd8] + StructTypes v1.11.0 ⌃ [2efcf032] + SymbolicIndexingInterface v0.3.44 [dc5dba14] + TZJData v1.5.0+2025b [ab02a1b2] + TableOperations v1.2.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [5d786b92] + TerminalLoggers v0.1.7 [f269a46b] + TimeZones v1.22.0 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.85 [fce5fe82] + Turing v0.40.3 [0004c1f4] + TuringGLM v2.14.2 [9d95f2ec] + TypedTables v1.4.6 [3a884ed6] + UnPack v1.0.2 [efce3f68] + WoodburyMatrices v1.0.0 [700de1a5] + ZygoteRules v0.2.7 [f5851436] + FFTW_jll v3.3.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [81d17ec3] + L_BFGS_B_jll v3.0.1+0 [5ced341a] + Lz4_jll v1.10.1+0 [856f044c] + MKL_jll v2025.2.0+0 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] 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Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 18.05s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5138.5 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... ERROR: LoadError: The following 3 direct dependencies failed to precompile: MooncakeSpecialFunctionsExt Failed to precompile MooncakeSpecialFunctionsExt [0ec37179-8e9d-5a9c-aab7-f15cb98de31f] to "/home/pkgeval/.julia/compiled/v1.13/MooncakeSpecialFunctionsExt/jl_47wYqM" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `inlining_policy` not defined in `Compiler` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] getproperty(x::Module, f::Symbol) @ Base ./Base_compiler.jl:50 [2] top-level scope @ ~/.julia/packages/Mooncake/8pcYR/src/interpreter/abstract_interpretation.jl:183 [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [4] top-level scope @ ~/.julia/packages/Mooncake/8pcYR/src/Mooncake.jl:119 [5] include(mod::Module, _path::String) @ Base ./Base.jl:309 [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3068 [7] top-level scope @ stdin:5 [8] eval(m::Module, e::Any) @ Core ./boot.jl:489 [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2914 [10] include_string @ ./loading.jl:2924 [inlined] [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/Mooncake/8pcYR/src/interpreter/abstract_interpretation.jl:158 in expression starting at /home/pkgeval/.julia/packages/Mooncake/8pcYR/src/Mooncake.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Mooncake [da2b9cff-9c12-43a0-ae48-6db2b0edb7d6] to "/home/pkgeval/.julia/compiled/v1.13/Mooncake/jl_Aw3cpR" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3355 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3233 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2697 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#234 @ ./reflection.jl:1335 [inlined] [9] invokelatest_gr @ ./reflection.jl:1327 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3926 [11] maybe_cachefile_lock @ ./loading.jl:3923 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2683 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2511 [14] macro expansion @ ./loading.jl:2439 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2403 [17] require @ ./loading.jl:2379 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/Mooncake/8pcYR/ext/MooncakeSpecialFunctionsExt.jl:3 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3068 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2914 [27] include_string @ ./loading.jl:2924 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [29] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/Mooncake/8pcYR/ext/MooncakeSpecialFunctionsExt.jl:1 in expression starting at stdin:5 Mooncake Failed to precompile Mooncake [da2b9cff-9c12-43a0-ae48-6db2b0edb7d6] to "/home/pkgeval/.julia/compiled/v1.13/Mooncake/jl_CSFGV5" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `inlining_policy` not defined in `Compiler` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] getproperty(x::Module, f::Symbol) @ Base ./Base_compiler.jl:50 [2] top-level scope @ ~/.julia/packages/Mooncake/8pcYR/src/interpreter/abstract_interpretation.jl:183 [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [4] top-level scope @ ~/.julia/packages/Mooncake/8pcYR/src/Mooncake.jl:119 [5] include(mod::Module, _path::String) @ Base ./Base.jl:309 [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3068 [7] top-level scope @ stdin:5 [8] eval(m::Module, e::Any) @ Core ./boot.jl:489 [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2914 [10] include_string @ ./loading.jl:2924 [inlined] [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/Mooncake/8pcYR/src/interpreter/abstract_interpretation.jl:158 in expression starting at /home/pkgeval/.julia/packages/Mooncake/8pcYR/src/Mooncake.jl:1 in expression starting at stdin:5 MooncakeFunctionWrappersExt Failed to precompile MooncakeFunctionWrappersExt [5a938603-addc-58b9-81fd-7edcfce5e7b6] to "/home/pkgeval/.julia/compiled/v1.13/MooncakeFunctionWrappersExt/jl_7QY9jp" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `inlining_policy` not defined in `Compiler` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] getproperty(x::Module, f::Symbol) @ Base ./Base_compiler.jl:50 [2] top-level scope @ ~/.julia/packages/Mooncake/8pcYR/src/interpreter/abstract_interpretation.jl:183 [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [4] top-level scope @ ~/.julia/packages/Mooncake/8pcYR/src/Mooncake.jl:119 [5] include(mod::Module, _path::String) @ Base ./Base.jl:309 [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3068 [7] top-level scope @ stdin:5 [8] eval(m::Module, e::Any) @ Core ./boot.jl:489 [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2914 [10] include_string @ ./loading.jl:2924 [inlined] [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/Mooncake/8pcYR/src/interpreter/abstract_interpretation.jl:158 in expression starting at /home/pkgeval/.julia/packages/Mooncake/8pcYR/src/Mooncake.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Mooncake [da2b9cff-9c12-43a0-ae48-6db2b0edb7d6] to "/home/pkgeval/.julia/compiled/v1.13/Mooncake/jl_H6GK50" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3355 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3233 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2697 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#234 @ ./reflection.jl:1335 [inlined] [9] invokelatest_gr @ ./reflection.jl:1327 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3926 [11] maybe_cachefile_lock @ ./loading.jl:3923 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2683 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2511 [14] macro expansion @ ./loading.jl:2439 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2403 [17] require @ ./loading.jl:2379 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [21] top-level scope @ ~/.julia/packages/Mooncake/8pcYR/ext/MooncakeFunctionWrappersExt.jl:5 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3068 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2914 [27] include_string @ ./loading.jl:2924 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [29] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/Mooncake/8pcYR/ext/MooncakeFunctionWrappersExt.jl:1 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 1755.9s ################################################################################ # Testing # Testing TuringGLM Status `/tmp/jl_EDExuU/Project.toml` [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v1.0.1 [a93c6f00] DataFrames v1.8.0 [f6369f11] ForwardDiff v1.2.1 [da2b9cff] Mooncake v0.4.168 [37e2e3b7] ReverseDiff v1.16.1 [860ef19b] StableRNGs v1.0.3 [10745b16] Statistics v1.11.1 [a759f4b9] TimerOutputs v0.5.29 [0004c1f4] TuringGLM v2.14.2 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_EDExuU/Manifest.toml` [47edcb42] ADTypes v1.18.0 [621f4979] AbstractFFTs v1.5.0 [80f14c24] AbstractMCMC v5.8.0 [7a57a42e] AbstractPPL v0.13.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [0bf59076] AdvancedHMC v0.8.2 [5b7e9947] 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[bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... [ Info: [Turing]: progress logging is disabled globally ┌ Warning: Only a single thread available: MCMC chains are not sampled in parallel └ @ AbstractMCMC ~/.julia/packages/AbstractMCMC/nQLlh/src/sample.jl:410 ┌ Info: Found initial step size └ ϵ = 0.0015625 ┌ Info: Found initial step size └ ϵ = 0.003125 ┌ Warning: Only a single thread available: MCMC chains are not sampled in parallel └ @ AbstractMCMC ~/.julia/packages/AbstractMCMC/nQLlh/src/sample.jl:410 ┌ Info: Found initial step size └ ϵ = 0.05 ┌ Info: Found initial step size └ ϵ = 0.05 ┌ Warning: Only a single thread available: MCMC chains are not sampled in parallel └ @ AbstractMCMC ~/.julia/packages/AbstractMCMC/nQLlh/src/sample.jl:410 ┌ Info: Found initial step size └ ϵ = 0.0015625 ┌ Info: Found initial step size └ ϵ = 0.0001953125 ┌ Warning: Only a single thread available: MCMC chains are not sampled in parallel └ @ AbstractMCMC ~/.julia/packages/AbstractMCMC/nQLlh/src/sample.jl:410 ┌ Info: Found initial step size └ ϵ = 0.0015625 ┌ Info: Found initial step size └ ϵ = 0.003125 ┌ Warning: Only a single thread available: MCMC chains are not sampled in parallel └ @ AbstractMCMC ~/.julia/packages/AbstractMCMC/nQLlh/src/sample.jl:410 ┌ Info: Found initial step size └ ϵ = 0.0125 ┌ Info: Found initial step size └ ϵ = 0.0125 ┌ Warning: Only a single thread available: MCMC chains are not sampled in parallel └ @ AbstractMCMC ~/.julia/packages/AbstractMCMC/nQLlh/src/sample.jl:410 ┌ Info: Found initial step size └ ϵ = 0.00625 ┌ Info: Found initial step size └ ϵ = 0.05 ┌ Warning: Only a single thread available: MCMC chains are not sampled in parallel └ @ AbstractMCMC ~/.julia/packages/AbstractMCMC/nQLlh/src/sample.jl:410 ┌ Info: Found initial step size └ ϵ = 0.003125 ┌ Info: Found initial step size └ ϵ = 0.003125 ┌ Warning: Only a single thread available: MCMC chains are not sampled in parallel └ @ AbstractMCMC ~/.julia/packages/AbstractMCMC/nQLlh/src/sample.jl:410 ┌ Info: Found initial step size └ ϵ = 0.0015625 ┌ Info: Found initial step size └ ϵ = 0.00625 ┌ Warning: Only a single thread available: MCMC chains are not sampled in parallel └ @ AbstractMCMC ~/.julia/packages/AbstractMCMC/nQLlh/src/sample.jl:410 ┌ Info: Found initial step size └ ϵ = 7.888609052210118e-32 ┌ Info: Found initial step size └ ϵ = 0.00078125 ┌ Warning: Only a single thread available: MCMC chains are not sampled in parallel └ @ AbstractMCMC ~/.julia/packages/AbstractMCMC/nQLlh/src/sample.jl:410 ┌ Info: Found initial step size └ ϵ = 0.0015625 ┌ Info: Found initial step size └ ϵ = 1.220703125e-5 ┌ Warning: Only a single thread available: MCMC chains are not sampled in parallel └ @ AbstractMCMC ~/.julia/packages/AbstractMCMC/nQLlh/src/sample.jl:410 ┌ Info: Found initial step size └ ϵ = 0.025 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1755 running 1 of 1 signal (10): User defined signal 1 fma at ./floatfuncs.jl:360 [inlined] log_proc1 at ./special/log.jl:186 [inlined] _log at ./special/log.jl:289 [inlined] log at ./special/log.jl:261 xlogy at /home/pkgeval/.julia/packages/LogExpFunctions/iNqo2/src/basicfuns.jl:28 [inlined] xlogy at /home/pkgeval/.julia/packages/ForwardDiff/2nvFM/src/dual.jl:285 [inlined] logpdf at /home/pkgeval/.julia/packages/Distributions/YQSrn/src/univariate/discrete/negativebinomial.jl:99 _broadcast_getindex_evalf at ./broadcast.jl:701 [inlined] _broadcast_getindex at ./broadcast.jl:674 [inlined] _getindex at ./broadcast.jl:622 [inlined] getindex at ./broadcast.jl:618 [inlined] macro expansion at /home/pkgeval/.julia/packages/LazyArrays/XqG4L/src/lazybroadcasting.jl:119 [inlined] macro expansion at ./simdloop.jl:77 [inlined] _sum at /home/pkgeval/.julia/packages/LazyArrays/XqG4L/src/lazybroadcasting.jl:118 #_sum#737 at ./reducedim.jl:987 [inlined] _sum at ./reducedim.jl:987 [inlined] #sum#735 at ./reducedim.jl:983 [inlined] sum at ./reducedim.jl:983 [inlined] _logpdf at /home/pkgeval/.julia/packages/DistributionsAD/GAQrK/ext/DistributionsADLazyArraysExt.jl:25 [inlined] logpdf at /home/pkgeval/.julia/packages/Distributions/YQSrn/src/common.jl:269 [inlined] loglikelihood at /home/pkgeval/.julia/packages/Distributions/YQSrn/src/common.jl:465 [inlined] accumulate_observe!! at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/default_accumulators.jl:165 [inlined] #accumulate_observe!!##0 at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/abstract_varinfo.jl:320 [inlined] map at ./tuple.jl:354 [inlined] map at ./namedtuple.jl:263 [inlined] map at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/accumulators.jl:204 [inlined] map_accumulators!! at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/abstract_varinfo.jl:330 [inlined] accumulate_observe!! at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/abstract_varinfo.jl:320 [inlined] tilde_observe!! at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/context_implementations.jl:114 unknown function (ip: 0x7670f3f3b854) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 negbin_model at /home/pkgeval/.julia/packages/TuringGLM/WIFvS/src/turing_model.jl:368 negbin_model at /home/pkgeval/.julia/packages/TuringGLM/WIFvS/src/turing_model.jl:363 [inlined] _evaluate!! at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/model.jl:921 [inlined] evaluate_threadunsafe!! at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/model.jl:887 [inlined] evaluate!! at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/model.jl:872 [inlined] logdensity_at at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/logdensityfunction.jl:242 LogDensityAt at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/logdensityfunction.jl:262 [inlined] vector_mode_dual_eval! at /home/pkgeval/.julia/packages/ForwardDiff/2nvFM/src/apiutils.jl:24 [inlined] vector_mode_gradient! at /home/pkgeval/.julia/packages/ForwardDiff/2nvFM/src/gradient.jl:105 gradient! at /home/pkgeval/.julia/packages/ForwardDiff/2nvFM/src/gradient.jl:39 [inlined] value_and_gradient at /home/pkgeval/.julia/packages/DifferentiationInterface/TuoGH/ext/DifferentiationInterfaceForwardDiffExt/onearg.jl:419 unknown function (ip: 0x7670f3f2fae6) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 logdensity_and_gradient at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/logdensityfunction.jl:289 #_#58 at ./operators.jl:1201 [inlined] Fix at ./operators.jl:1201 [inlined] ∂H∂θ at /home/pkgeval/.julia/packages/AdvancedHMC/B1wPY/src/hamiltonian.jl:46 unknown function (ip: 0x7670f3f23e8d) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 #step#10 at /home/pkgeval/.julia/packages/AdvancedHMC/B1wPY/src/integrator.jl:244 step at /home/pkgeval/.julia/packages/AdvancedHMC/B1wPY/src/integrator.jl:216 [inlined] build_tree at /home/pkgeval/.julia/packages/AdvancedHMC/B1wPY/src/trajectory.jl:640 build_tree at /home/pkgeval/.julia/packages/AdvancedHMC/B1wPY/src/trajectory.jl:650 build_tree at /home/pkgeval/.julia/packages/AdvancedHMC/B1wPY/src/trajectory.jl:650 unknown function (ip: 0x7670f3f591a7) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 transition at /home/pkgeval/.julia/packages/AdvancedHMC/B1wPY/src/trajectory.jl:702 transition at /home/pkgeval/.julia/packages/AdvancedHMC/B1wPY/src/sampler.jl:57 [inlined] #step#34 at /home/pkgeval/.julia/packages/Turing/ArWoY/src/mcmc/hmc.jl:263 step at /home/pkgeval/.julia/packages/Turing/ArWoY/src/mcmc/hmc.jl:249 unknown function (ip: 0x7670f3f71dd1) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 macro expansion at /home/pkgeval/.julia/packages/AbstractMCMC/nQLlh/src/sample.jl:0 [inlined] macro expansion at /home/pkgeval/.julia/packages/AbstractMCMC/nQLlh/src/logging.jl:137 [inlined] #mcmcsample#23 at /home/pkgeval/.julia/packages/AbstractMCMC/nQLlh/src/sample.jl:151 mcmcsample at /home/pkgeval/.julia/packages/AbstractMCMC/nQLlh/src/sample.jl:109 #sample#31 at /home/pkgeval/.julia/packages/Turing/ArWoY/src/mcmc/hmc.jl:117 [inlined] sample at /home/pkgeval/.julia/packages/Turing/ArWoY/src/mcmc/hmc.jl:86 unknown function (ip: 0x7670f3ef0efa) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 #58 at /home/pkgeval/.julia/packages/AbstractMCMC/nQLlh/src/sample.jl:550 unknown function (ip: 0x7670f3ef0c39) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) #= 30.0 ms =# precompile(Tuple{typeof(Core.kwcall), NamedTuple{(:nadapts, :initial_params, :chain_number), Tuple{Int64, Nothing, Int64}}, typeof(AbstractMCMC.samples), Turing.Inference.Transition{OrderedCollections.OrderedDict{AbstractPPL.VarName{sym, T} where T<:Union{typeof(Base.identity), Accessors.IndexLens{I} where I<:Tuple, Accessors.PropertyLens{fieldname} where fieldname, Base.ComposedFunction{O, I} where I where O} where sym, Any}, Float64, NamedTuple{(:n_steps, :is_accept, :acceptance_rate, :log_density, :hamiltonian_energy, :hamiltonian_energy_error, :max_hamiltonian_energy_error, :tree_depth, :numerical_error, :step_size, :nom_step_size), Tuple{Int64, Bool, Float64, Float64, Float64, Float64, Float64, Int64, Bool, Float64, Float64}}}, DynamicPPL.Model{TuringGLM.var"#negbin_model#_model##27"{TuringGLM.var"#negbin_model#27#_model##28", Int64, Int64, TuringGLM.CustomPrior}, (:y, :X), (:predictors, :μ_X, :σ_X, :prior), (), Tuple{Array{Int64, 1}, Array{Float64, 2}}, Tuple{Int64, Int64, Int64, TuringGLM.CustomPrior}, DynamicPPL.DefaultContext}, DynamicPPL.Sampler{Turing.Inference.NUTS{ADTypes.AutoForwardDiff{nothing, Nothing}, AdvancedHMC.DiagEuclideanMetric{T, A} where A<:Union{AbstractArray{T, 1}, AbstractArray{T, 2}} where T}}, Int64}) #= 43.6 ms =# precompile(Tuple{typeof(Core.kwcall), NamedTuple{(:nadapts, :initial_params, :chain_number), Tuple{Int64, Nothing, Int64}}, typeof(AbstractMCMC.save!!), Array{Turing.Inference.Transition{OrderedCollections.OrderedDict{AbstractPPL.VarName{sym, T} where T<:Union{typeof(Base.identity), Accessors.IndexLens{I} where I<:Tuple, Accessors.PropertyLens{fieldname} where fieldname, Base.ComposedFunction{O, I} where I where O} where sym, Any}, Float64, NamedTuple{(:n_steps, :is_accept, :acceptance_rate, :log_density, :hamiltonian_energy, :hamiltonian_energy_error, :max_hamiltonian_energy_error, :tree_depth, :numerical_error, :step_size, :nom_step_size), Tuple{Int64, Bool, Float64, Float64, Float64, Float64, Float64, Int64, Bool, Float64, Float64}}}, 1}, Turing.Inference.Transition{OrderedCollections.OrderedDict{AbstractPPL.VarName{sym, T} where T<:Union{typeof(Base.identity), Accessors.IndexLens{I} where I<:Tuple, Accessors.PropertyLens{fieldname} where fieldname, Base.ComposedFunction{O, I} where I where O} where sym, Any}, Float64, NamedTuple{(:n_steps, :is_accept, :acceptance_rate, :log_density, :hamiltonian_energy, :hamiltonian_energy_error, :max_hamiltonian_energy_error, :tree_depth, :numerical_error, :step_size, :nom_step_size), Tuple{Int64, Bool, Float64, Float64, Float64, Float64, Float64, Int64, Bool, Float64, Float64}}}, Int64, DynamicPPL.Model{TuringGLM.var"#negbin_model#_model##27"{TuringGLM.var"#negbin_model#27#_model##28", Int64, Int64, TuringGLM.CustomPrior}, (:y, :X), (:predictors, :μ_X, :σ_X, :prior), (), Tuple{Array{Int64, 1}, Array{Float64, 2}}, Tuple{Int64, Int64, Int64, TuringGLM.CustomPrior}, DynamicPPL.DefaultContext}, DynamicPPL.Sampler{Turing.Inference.NUTS{ADTypes.AutoForwardDiff{nothing, Nothing}, AdvancedHMC.DiagEuclideanMetric{T, A} where A<:Union{AbstractArray{T, 1}, AbstractArray{T, 2}} where T}}, Int64}) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 ┌ Info: Found initial step size └ ϵ = 0.0125 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_72924.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007cf14068ad10 Total snapshots: 417. Utilization: 0% ╎417 @Base/task.jl:1137 wait_forever() 416╎ 417 @Base/task.jl:1200 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_72924.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 35661560 (Pool: 35660598; Big: 962); GC: 47 [1755] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/TuringGLM/WIFvS/test/turing_model.jl:3 * at ./float.jl:494 [inlined] * at ./operators.jl:650 [inlined] log_proc1 at ./special/log.jl:179 [inlined] _log at ./special/log.jl:289 [inlined] log at ./special/log.jl:261 xlogy at /home/pkgeval/.julia/packages/LogExpFunctions/iNqo2/src/basicfuns.jl:28 [inlined] xlogy at /home/pkgeval/.julia/packages/ForwardDiff/2nvFM/src/dual.jl:285 [inlined] logpdf at /home/pkgeval/.julia/packages/Distributions/YQSrn/src/univariate/discrete/negativebinomial.jl:99 _broadcast_getindex_evalf at ./broadcast.jl:701 [inlined] _broadcast_getindex at ./broadcast.jl:674 [inlined] _getindex at ./broadcast.jl:622 [inlined] getindex at ./broadcast.jl:618 [inlined] macro expansion at /home/pkgeval/.julia/packages/LazyArrays/XqG4L/src/lazybroadcasting.jl:119 [inlined] macro expansion at ./simdloop.jl:77 [inlined] _sum at /home/pkgeval/.julia/packages/LazyArrays/XqG4L/src/lazybroadcasting.jl:118 #_sum#737 at ./reducedim.jl:987 [inlined] _sum at ./reducedim.jl:987 [inlined] #sum#735 at ./reducedim.jl:983 [inlined] sum at ./reducedim.jl:983 [inlined] _logpdf at /home/pkgeval/.julia/packages/DistributionsAD/GAQrK/ext/DistributionsADLazyArraysExt.jl:25 [inlined] logpdf at /home/pkgeval/.julia/packages/Distributions/YQSrn/src/common.jl:269 [inlined] loglikelihood at /home/pkgeval/.julia/packages/Distributions/YQSrn/src/common.jl:465 [inlined] accumulate_observe!! at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/default_accumulators.jl:165 [inlined] #accumulate_observe!!##0 at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/abstract_varinfo.jl:320 [inlined] map at ./tuple.jl:354 [inlined] map at ./namedtuple.jl:263 [inlined] map at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/accumulators.jl:204 [inlined] map_accumulators!! at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/abstract_varinfo.jl:330 [inlined] accumulate_observe!! at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/abstract_varinfo.jl:320 [inlined] tilde_observe!! at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/context_implementations.jl:114 unknown function (ip: 0x7670f3f3b854) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 negbin_model at /home/pkgeval/.julia/packages/TuringGLM/WIFvS/src/turing_model.jl:368 negbin_model at /home/pkgeval/.julia/packages/TuringGLM/WIFvS/src/turing_model.jl:363 [inlined] _evaluate!! at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/model.jl:921 [inlined] evaluate_threadunsafe!! at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/model.jl:887 [inlined] evaluate!! at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/model.jl:872 [inlined] logdensity_at at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/logdensityfunction.jl:242 LogDensityAt at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/logdensityfunction.jl:262 [inlined] vector_mode_dual_eval! at /home/pkgeval/.julia/packages/ForwardDiff/2nvFM/src/apiutils.jl:24 [inlined] vector_mode_gradient! at /home/pkgeval/.julia/packages/ForwardDiff/2nvFM/src/gradient.jl:105 gradient! at /home/pkgeval/.julia/packages/ForwardDiff/2nvFM/src/gradient.jl:39 [inlined] value_and_gradient at /home/pkgeval/.julia/packages/DifferentiationInterface/TuoGH/ext/DifferentiationInterfaceForwardDiffExt/onearg.jl:419 unknown function (ip: 0x7670f3f2fae6) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 logdensity_and_gradient at /home/pkgeval/.julia/packages/DynamicPPL/R1CV0/src/logdensityfunction.jl:289 #_#58 at ./operators.jl:1201 [inlined] Fix at ./operators.jl:1201 [inlined] ∂H∂θ at /home/pkgeval/.julia/packages/AdvancedHMC/B1wPY/src/hamiltonian.jl:46 unknown function (ip: 0x7670f3f23e8d) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 #step#10 at /home/pkgeval/.julia/packages/AdvancedHMC/B1wPY/src/integrator.jl:244 step at /home/pkgeval/.julia/packages/AdvancedHMC/B1wPY/src/integrator.jl:216 [inlined] build_tree at /home/pkgeval/.julia/packages/AdvancedHMC/B1wPY/src/trajectory.jl:640 build_tree at /home/pkgeval/.julia/packages/AdvancedHMC/B1wPY/src/trajectory.jl:650 unknown function (ip: 0x7670f3f591a7) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 build_tree at /home/pkgeval/.julia/packages/AdvancedHMC/B1wPY/src/trajectory.jl:661 unknown function (ip: 0x7670f3f591a7) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 build_tree at /home/pkgeval/.julia/packages/AdvancedHMC/B1wPY/src/trajectory.jl:661 unknown function (ip: 0x7670f3f591a7) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 transition at /home/pkgeval/.julia/packages/AdvancedHMC/B1wPY/src/trajectory.jl:702 transition at /home/pkgeval/.julia/packages/AdvancedHMC/B1wPY/src/sampler.jl:57 [inlined] #step#34 at /home/pkgeval/.julia/packages/Turing/ArWoY/src/mcmc/hmc.jl:263 step at /home/pkgeval/.julia/packages/Turing/ArWoY/src/mcmc/hmc.jl:249 unknown function (ip: 0x7670f3f71dd1) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 macro expansion at /home/pkgeval/.julia/packages/AbstractMCMC/nQLlh/src/sample.jl:0 [inlined] macro expansion at /home/pkgeval/.julia/packages/AbstractMCMC/nQLlh/src/logging.jl:137 [inlined] #mcmcsample#23 at /home/pkgeval/.julia/packages/AbstractMCMC/nQLlh/src/sample.jl:151 mcmcsample at /home/pkgeval/.julia/packages/AbstractMCMC/nQLlh/src/sample.jl:109 #sample#31 at /home/pkgeval/.julia/packages/Turing/ArWoY/src/mcmc/hmc.jl:117 [inlined] sample at /home/pkgeval/.julia/packages/Turing/ArWoY/src/mcmc/hmc.jl:86 unknown function (ip: 0x7670f3ef0efa) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 #58 at /home/pkgeval/.julia/packages/AbstractMCMC/nQLlh/src/sample.jl:550 unknown function (ip: 0x7670f3ef0c39) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 741278457 (Pool: 741276732; Big: 1725); GC: 2155 PkgEval terminated after 2723.29s: test duration exceeded the time limit