Package evaluation of StructuralIdentifiability on Julia 1.13.0-DEV.1216 (bcb9a929e5*) started at 2025-09-28T15:08:02.848 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.98s ################################################################################ # Installation # Installing StructuralIdentifiability... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [220ca800] + StructuralIdentifiability v0.5.16 Updating `~/.julia/environments/v1.13/Manifest.toml` ⌅ [c3fe647b] + AbstractAlgebra v0.46.5 [a9b6321e] + Atomix v1.1.2 [861a8166] + Combinatorics v1.0.3 [864edb3b] + DataStructures v0.19.1 [e2ba6199] + ExprTools v0.1.10 [0b43b601] + Groebner v0.9.5 [18e54dd8] + IntegerMathUtils v0.1.3 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.1 [1914dd2f] + MacroTools v0.5.16 ⌅ [2edaba10] + Nemo v0.51.1 [bac558e1] + OrderedCollections v1.8.1 [3e851597] + ParamPunPam v0.5.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.11.0 [fb686558] + RandomExtensions v0.4.4 [220ca800] + StructuralIdentifiability v0.5.16 [a759f4b9] + TimerOutputs v0.5.29 [013be700] + UnsafeAtomics v0.3.0 [e134572f] + FLINT_jll v301.300.102+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [3a97d323] + MPFR_jll v4.2.2+0 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.79s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 230.75s ################################################################################ # Testing # Testing StructuralIdentifiability Status `/tmp/jl_YNkWPi/Project.toml` ⌅ [c3fe647b] AbstractAlgebra v0.46.5 [4c88cf16] Aqua v0.8.14 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.0.3 [864edb3b] DataStructures v0.19.1 [0b43b601] Groebner v0.9.5 [c8e1da08] IterTools v1.10.0 [1914dd2f] MacroTools v0.5.16 ⌅ [2edaba10] Nemo v0.51.1 [3e851597] ParamPunPam v0.5.3 [aea7be01] PrecompileTools v1.3.3 [27ebfcd6] Primes v0.5.7 [276daf66] SpecialFunctions v2.5.1 [220ca800] StructuralIdentifiability v0.5.16 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_YNkWPi/Manifest.toml` ⌅ [c3fe647b] AbstractAlgebra v0.46.5 [4c88cf16] Aqua v0.8.14 [a9b6321e] Atomix v1.1.2 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.0.3 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.0 [adafc99b] CpuId v0.3.1 [864edb3b] DataStructures v0.19.1 [ab62b9b5] DeepDiffs v1.2.0 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [0b43b601] Groebner v0.9.5 [615f187c] IfElse v0.1.1 [18e54dd8] IntegerMathUtils v0.1.3 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 ⌅ [2edaba10] Nemo v0.51.1 [bac558e1] OrderedCollections v1.8.1 [3e851597] ParamPunPam v0.5.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.11.0 [fb686558] RandomExtensions v0.4.4 [431bcebd] SciMLPublic v1.0.0 [276daf66] SpecialFunctions v2.5.1 [aedffcd0] Static v1.3.0 [220ca800] StructuralIdentifiability v0.5.16 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 [e134572f] FLINT_jll v301.300.102+0 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [3a97d323] MPFR_jll v4.2.2+0 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 9884.2 ms ✓ AbstractAlgebra → TestExt 1 dependency successfully precompiled in 10 seconds. 18 already precompiled. Precompiling packages... 1356.4 ms ✓ OpenSpecFun_jll 5226.3 ms ✓ SpecialFunctions 2 dependencies successfully precompiled in 7 seconds. 10 already precompiled. Resolving package versions... Updating `/tmp/jl_YNkWPi/Project.toml` ⌅ [c3fe647b] ↓ AbstractAlgebra v0.46.5 ⇒ v0.44.13 [loaded: v0.46.5] ⌅ [864edb3b] ↓ DataStructures v0.19.1 ⇒ v0.18.22 [loaded: v0.19.1] [961ee093] + ModelingToolkit v10.23.0 ⌅ [2edaba10] ↓ Nemo v0.51.1 ⇒ v0.49.5 [loaded: v0.51.1] Updating `/tmp/jl_YNkWPi/Manifest.toml` [47edcb42] + ADTypes v1.18.0 ⌅ [c3fe647b] ↓ AbstractAlgebra v0.46.5 ⇒ v0.44.13 [loaded: v0.46.5] [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.20.0 [4c555306] + ArrayLayouts v1.11.2 [e2ed5e7c] + Bijections v0.2.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.7.2 [70df07ce] + BracketingNonlinearSolve v1.4.0 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [a80b9123] + CommonMark v0.9.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] ↓ DataStructures v0.19.1 ⇒ v0.18.22 [loaded: v0.19.1] [2b5f629d] + DiffEqBase v6.190.2 [459566f4] + DiffEqCallbacks v4.9.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.7 [8d63f2c5] + DispatchDoctor v0.4.26 [31c24e10] + Distributions v0.25.120 [5b8099bc] + DomainSets v0.7.16 ⌃ [7c1d4256] + DynamicPolynomials v0.6.3 [06fc5a27] + DynamicQuantities v1.10.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.14 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.3 [1a297f60] + FillArrays v1.14.0 [64ca27bc] + FindFirstFunctions v1.4.2 [6a86dc24] + FiniteDiff v2.28.1 [1fa38f19] + Format v1.3.7 ⌃ [f6369f11] + ForwardDiff v0.10.39 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.1 [34004b35] + HypergeometricFunctions v0.3.28 [3263718b] + ImplicitDiscreteSolve v1.2.0 [d25df0c9] + Inflate v0.1.5 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [82899510] + IteratorInterfaceExtensions v1.0.0 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v2.1.6 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.19.1 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.0 [d8e11817] + MLStyle v0.4.17 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [961ee093] + ModelingToolkit v10.23.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 ⌃ [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.6.6 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 ⌅ [2edaba10] ↓ Nemo v0.51.1 ⇒ v0.49.5 [loaded: v0.51.1] [be0214bd] + NonlinearSolveBase v1.16.1 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [bbf590c4] + OrdinaryDiffEqCore v1.34.0 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.6 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.34 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.37.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [9dfe8606] + SCCNonlinearSolve v1.5.0 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.120.0 [19f34311] + SciMLJacobianOperators v0.1.11 [c0aeaf25] + SciMLOperators v1.7.2 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.8.0 [699a6c99] + SimpleTraits v0.9.5 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [7792a7ef] + StrideArraysCore v0.5.8 [2efcf032] + SymbolicIndexingInterface v0.3.45 ⌃ [19f23fe9] + SymbolicLimits v0.2.3 ⌅ [d1185830] + SymbolicUtils v3.31.0 [0c5d862f] + Symbolics v6.55.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [410a4b4d] + Tricks v0.1.12 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.25.0 [a7c27f48] + Unityper v0.1.6 ⌅ [e134572f] ↓ FLINT_jll v301.300.102+0 ⇒ v300.200.201+0 [loaded: v301.300.102+0] [61579ee1] + Ghostscript_jll v9.55.1+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [f50d1b31] + Rmath_jll v0.5.1+0 [9fa8497b] + Future v1.11.0 [a63ad114] + Mmap v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [4607b0f0] + SuiteSparse Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Resolving package versions... Updating `/tmp/jl_YNkWPi/Project.toml` [0c5d862f] + Symbolics v6.55.0 Manifest No packages added to or removed from `/tmp/jl_YNkWPi/Manifest.toml` Precompiling packages... 1805.2 ms ✓ CommonSubexpressions 1076.0 ms ✓ PoissonRandom 3192.4 ms ✓ DispatchDoctor 1660.4 ms ✓ TruncatedStacktraces 2333.1 ms ✓ Accessors → UnitfulExt 1394.1 ms ✓ MaybeInplace 4679.7 ms ✓ StatsBase 13341.1 ms ✓ CommonMark 2329.3 ms ✓ CPUSummary 1353.9 ms ✓ Rmath_jll 4198.4 ms ✓ SciMLOperators 3749.9 ms ✓ SymbolicIndexingInterface 1871.8 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 7547.6 ms ✓ MultivariatePolynomials 1366.4 ms ✓ ResettableStacks 1403.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1503.3 ms ✓ Accessors → StaticArraysExt 918.6 ms ✓ BitTwiddlingConvenienceFunctions 9226.1 ms ✓ Graphs 1195.3 ms ✓ CloseOpenIntervals 1380.9 ms ✓ LayoutPointers 4343.9 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2603.0 ms ✓ HypergeometricFunctions 6650.7 ms ✓ Latexify 9573.7 ms ✓ ForwardDiff 1595.4 ms ✓ DispatchDoctor → DispatchDoctorChainRulesCoreExt 974.1 ms ✓ DispatchDoctor → DispatchDoctorEnzymeCoreExt 9171.9 ms ✓ DynamicQuantities 1362.0 ms ✓ MaybeInplace → MaybeInplaceSparseArraysExt 58624.8 ms ✓ JuliaFormatter 2467.1 ms ✓ Rmath 2127.0 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 2521.7 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 3841.7 ms ✓ RecursiveArrayTools 4876.6 ms ✓ DynamicPolynomials 1871.6 ms ✓ PolyesterWeave 2468.1 ms ✓ StrideArraysCore 2653.2 ms ✓ Latexify → SparseArraysExt 4481.3 ms ✓ Unitful → LatexifyExt 4014.5 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 3588.6 ms ✓ FastPower → FastPowerForwardDiffExt 2458.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 2843.6 ms ✓ Unitful → ForwardDiffExt 1346.4 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 1920.3 ms ✓ DynamicQuantities → DynamicQuantitiesLinearAlgebraExt 4114.7 ms ✓ DynamicQuantities → DynamicQuantitiesUnitfulExt 3137.6 ms ✓ StatsFuns 2209.7 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 13331.0 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 29501.2 ms ✓ SciMLBase 69968.6 ms ✓ SymbolicUtils 2169.9 ms ✓ Polyester 10136.1 ms ✓ NLSolversBase 3395.3 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 1548.8 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 7838.0 ms ✓ Distributions 2917.8 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 5935.6 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 4083.5 ms ✓ SciMLBase → SciMLBaseMLStyleExt 8333.7 ms ✓ SciMLJacobianOperators 3336.2 ms ✓ SCCNonlinearSolve 9260.0 ms ✓ SymbolicLimits 2372.1 ms ✓ FastBroadcast 6936.6 ms ✓ LineSearches 4592.1 ms ✓ Distributions → DistributionsTestExt 4997.3 ms ✓ Distributions → DistributionsChainRulesCoreExt 4969.9 ms ✓ SciMLBase → SciMLBaseDistributionsExt 10614.3 ms ✓ LineSearch 56880.1 ms ✓ NonlinearSolveBase 3042.4 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 10790.5 ms ✓ Optim 148546.4 ms ✓ Symbolics 64471.6 ms ✓ LineSearch → LineSearchLineSearchesExt 27975.4 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 3442.4 ms ✓ NonlinearSolveBase → NonlinearSolveBaseChainRulesCoreExt 3273.9 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 6036.0 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 9100.3 ms ✓ BracketingNonlinearSolve 33434.1 ms ✓ DiffEqBase 167019.3 ms ✓ Symbolics → SymbolicsForwardDiffExt 10488.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt 6256.4 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 5490.9 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 5389.9 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 4572.9 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 6091.8 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 9016.1 ms ✓ OrdinaryDiffEqCore 12423.2 ms ✓ DiffEqCallbacks 17101.0 ms ✓ Symbolics → SymbolicsPreallocationToolsExt 3995.4 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 33605.0 ms ✓ SimpleNonlinearSolve 115681.9 ms ✓ DiffEqNoiseProcess 16569.4 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 34368.3 ms ✓ JumpProcesses 91124.8 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 8804.1 ms ✓ ImplicitDiscreteSolve Info Given ModelingToolkit was explicitly requested, output will be shown live  ┌ Warning: `enqueue!(q::Queue, x)` is deprecated, use `Base.push!(q, x)` instead. │ caller = topsort_equations(eqs::Vector{Symbolics.Equation}, unknowns::Vector{SymbolicUtils.BasicSymbolic}; check::Bool) at alias_elimination.jl:429 └ @ Core ~/.julia/packages/ModelingToolkit/bdYND/src/systems/alias_elimination.jl:429 ┌ Warning: `dequeue!(q::Queue)` is deprecated, use `Base.popfirst!(q)` instead. │ caller = topsort_equations(eqs::Vector{Symbolics.Equation}, unknowns::Vector{SymbolicUtils.BasicSymbolic}; check::Bool) at alias_elimination.jl:436 └ @ Core ~/.julia/packages/ModelingToolkit/bdYND/src/systems/alias_elimination.jl:436 426621.3 ms ✓ ModelingToolkit 97 dependencies successfully precompiled in 1773 seconds. 174 already precompiled. 3 dependencies had output during precompilation: ┌ JumpProcesses │ WARNING: importing deprecated binding DataStructures.IntDisjointSets into Graphs. │ , use IntDisjointSet instead. └ ┌ ModelingToolkit │ [Output was shown above] └ ┌ Graphs │ WARNING: importing deprecated binding DataStructures.IntDisjointSets into Graphs. │ , use IntDisjointSet instead. └ Precompiling packages... 15842.9 ms ✓ AbstractAlgebra 1024.8 ms ✓ FLINT_jll 4344.4 ms ✓ AbstractAlgebra → TestExt ✗ Nemo 10411.6 ms ✓ Groebner → GroebnerDynamicPolynomialsExt 4 dependencies successfully precompiled in 59 seconds. 40 already precompiled. 3 dependencies precompiled but different versions are currently loaded. Restart julia to access the new versions. Otherwise, loading dependents of these packages may trigger further precompilation to work with the unexpected versions. ┌ Error: Error during loading of extension GroebnerDynamicPolynomialsExt of Groebner, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 direct dependency failed to precompile: │ │ Nemo │ │ Failed to precompile Nemo [2edaba10-b0f1-5616-af89-8c11ac63239a] to "/home/pkgeval/.julia/compiled/v1.13/Nemo/jl_TU0HbO" (ProcessExited(1)). │ ERROR: LoadError: cannot declare Nemo.PosInf constant; it was already declared as an import │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:310 │ [3] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Nemo.jl:440 │ [4] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3068 │ [6] top-level scope │ @ stdin:5 │ [7] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:2914 │ [9] include_string │ @ ./loading.jl:2924 [inlined] │ [10] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:328 │ [11] _start() │ @ Base ./client.jl:563 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Nemo.jl:1 │ in expression starting at stdin: └ @ Base loading.jl:1587 Precompiling packages... ✗ Nemo Info Given SymbolicsNemoExt was explicitly requested, output will be shown live  [ Info: Assuming ((1//128)*(√((5120//1)*(a^4)) - (80//1)*(a^2))) != 0 [ Info: Assuming ((1//128)*(√((5120//1)*(a^4)) - (80//1)*(a^2))) != 0 113565.2 ms ✓ Symbolics → SymbolicsNemoExt 1 dependency successfully precompiled in 147 seconds. 158 already precompiled. 1 dependency had output during precompilation: ┌ Symbolics → SymbolicsNemoExt │ [Output was shown above] └ ┌ Error: Error during loading of extension SymbolicsNemoExt of Symbolics, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 direct dependency failed to precompile: │ │ Nemo │ │ Failed to precompile Nemo [2edaba10-b0f1-5616-af89-8c11ac63239a] to "/home/pkgeval/.julia/compiled/v1.13/Nemo/jl_LnrwB6" (ProcessExited(1)). │ ERROR: LoadError: cannot declare Nemo.PosInf constant; it was already declared as an import │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:310 │ [3] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Nemo.jl:440 │ [4] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3068 │ [6] top-level scope │ @ stdin:5 │ [7] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:2914 │ [9] include_string │ @ ./loading.jl:2924 [inlined] │ [10] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:328 │ [11] _start() │ @ Base ./client.jl:563 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Nemo.jl:1 │ in expression starting at stdin: └ @ Base loading.jl:1587 Precompiling packages... ✗ Nemo 21589.6 ms ✓ Symbolics → SymbolicsGroebnerExt 1 dependency successfully precompiled in 56 seconds. 163 already precompiled. ┌ Error: Error during loading of extension SymbolicsGroebnerExt of Symbolics, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 direct dependency failed to precompile: │ │ Nemo │ │ Failed to precompile Nemo [2edaba10-b0f1-5616-af89-8c11ac63239a] to "/home/pkgeval/.julia/compiled/v1.13/Nemo/jl_Ewo7Pc" (ProcessExited(1)). │ ERROR: LoadError: cannot declare Nemo.PosInf constant; it was already declared as an import │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:310 │ [3] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Nemo.jl:440 │ [4] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3068 │ [6] top-level scope │ @ stdin:5 │ [7] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:2914 │ [9] include_string │ @ ./loading.jl:2924 [inlined] │ [10] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:328 │ [11] _start() │ @ Base ./client.jl:563 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Nemo.jl:1 │ in expression starting at stdin: └ @ Base loading.jl:1587 Precompiling packages... 49850.9 ms ✓ ModelingToolkit → MTKDeepDiffsExt 1 dependency successfully precompiled in 52 seconds. 272 already precompiled. Precompiling packages... ✗ Nemo 64569.8 ms ✓ StructuralIdentifiability → ModelingToolkitSIExt 1 dependency successfully precompiled in 99 seconds. 288 already precompiled. ┌ Error: Error during loading of extension ModelingToolkitSIExt of StructuralIdentifiability, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 direct dependency failed to precompile: │ │ Nemo │ │ Failed to precompile Nemo [2edaba10-b0f1-5616-af89-8c11ac63239a] to "/home/pkgeval/.julia/compiled/v1.13/Nemo/jl_56r9oG" (ProcessExited(1)). │ ERROR: LoadError: cannot declare Nemo.PosInf constant; it was already declared as an import │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:310 │ [3] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Nemo.jl:440 │ [4] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3068 │ [6] top-level scope │ @ stdin:5 │ [7] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:2914 │ [9] include_string │ @ ./loading.jl:2924 [inlined] │ [10] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:328 │ [11] _start() │ @ Base ./client.jl:563 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Nemo.jl:1 │ in expression starting at stdin: └ @ Base loading.jl:1587 [ Info: Testing started ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 43 running 1 of 1 signal (10): User defined signal 1 __libc_free at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) _ZN4llvm4UserdlEPv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11Instruction15eraseFromParentEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm16InstCombinerImpl21eraseInstFromFunctionERNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm16InstCombinerImpl3runEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZL31combineInstructionsOverFunctionRN4llvm8FunctionERNS_19InstructionWorklistEPNS_9AAResultsERNS_15AssumptionCacheERNS_17TargetLibraryInfoERNS_19TargetTransformInfoERNS_13DominatorTreeERNS_25OptimizationRemarkEmitterEPNS_18BlockFrequencyInfoEPNS_21BranchProbabilityInfoEPNS_18ProfileSummaryInfoERKNS_18InstCombineOptionsE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15InstCombinePass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:791 operator() at /source/src/jitlayers.cpp:1513 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1474 [inlined] operator() at /source/src/jitlayers.cpp:1649 [inlined] addModule at /source/src/jitlayers.cpp:2106 jl_compile_codeinst_now at /source/src/jitlayers.cpp:682 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:876 jl_compile_method_internal at /source/src/gf.c:3648 _jl_invoke at /source/src/gf.c:4108 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _groebner_learn_and_apply at /home/pkgeval/.julia/packages/Groebner/k40dp/src/groebner/groebner.jl:221 _groebner2 at /home/pkgeval/.julia/packages/Groebner/k40dp/src/groebner/groebner.jl:138 unknown function (ip: 0x7d80303c845e) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 groebner2 at /home/pkgeval/.julia/packages/Groebner/k40dp/src/groebner/groebner.jl:86 unknown function (ip: 0x7d8031cfba01) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 __groebner1 at /home/pkgeval/.julia/packages/Groebner/k40dp/src/groebner/groebner.jl:57 unknown function (ip: 0x7d8031cf4469) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _groebner1 at /home/pkgeval/.julia/packages/Groebner/k40dp/src/groebner/groebner.jl:34 unknown function (ip: 0x7d8031cf1a80) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 groebner0 at /home/pkgeval/.julia/packages/Groebner/k40dp/src/groebner/groebner.jl:10 #groebner#172 at /home/pkgeval/.julia/packages/Groebner/k40dp/src/interface.jl:111 [inlined] groebner at /home/pkgeval/.julia/packages/Groebner/k40dp/src/interface.jl:109 [inlined] check_primality_zerodim at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/primality_check.jl:4 unknown function (ip: 0x7d8031cda8f2) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:690 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:793 jl_eval_toplevel_stmts at /source/src/toplevel.c:622 jl_toplevel_eval_flex at /source/src/toplevel.c:734 ijl_toplevel_eval at /source/src/toplevel.c:805 ijl_toplevel_eval_in at /source/src/toplevel.c:850 eval at ./boot.jl:489 include_string at ./loading.jl:2914 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:2974 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 unknown function (ip: 0x7d8031cbb642) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 macro expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/runtests.jl:162 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:1952 [inlined] macro expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/runtests.jl:160 [inlined] macro expansion at ./timing.jl:689 [inlined] top-level scope at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/runtests.jl:159 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_invoke at /source/src/gf.c:4123 jl_toplevel_eval_flex at /source/src/toplevel.c:782 jl_eval_toplevel_stmts at /source/src/toplevel.c:622 jl_toplevel_eval_flex at /source/src/toplevel.c:734 ijl_toplevel_eval at /source/src/toplevel.c:805 ijl_toplevel_eval_in at /source/src/toplevel.c:850 eval at ./boot.jl:489 include_string at ./loading.jl:2914 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:2974 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_24410.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:690 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:793 jl_eval_toplevel_stmts at /source/src/toplevel.c:622 jl_toplevel_eval_flex at /source/src/toplevel.c:734 ijl_toplevel_eval at /source/src/toplevel.c:805 ijl_toplevel_eval_in at /source/src/toplevel.c:850 eval at ./boot.jl:489 exec_options at ./client.jl:296 _start at ./client.jl:563 jfptr__start_51780.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7d8076ae4249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) #= 684.6 ms =# precompile(Tuple{typeof(Groebner.basis_make_monic!), Groebner.Basis{UInt64}, Groebner.SpecializedArithmeticZp{UInt128, UInt64, false}, Bool}) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_72924.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000751c58607850 Total snapshots: 382. Utilization: 0% ╎382 @Base/task.jl:1137 wait_forever() 381╎ 382 @Base/task.jl:1200 wait() [43] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/check_primality_zerodim.jl:1 PkgEval terminated after 2733.77s: test duration exceeded the time limit