Package evaluation of Stheno on Julia 1.13.0-DEV.1216 (bcb9a929e5*) started at 2025-09-28T17:36:25.021 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.75s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.2 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.14.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.1 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.72s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 67.71s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_l3Y3e0/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.33 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_l3Y3e0/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.2 [a9b6321e] Atomix v1.1.2 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.26.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.1 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.14.0 [26cc04aa] FiniteDifferences v0.12.33 [f6369f11] ForwardDiff v1.2.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.5 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.38 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.2 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.37+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 9037.2 ms ✓ Documenter 1 dependency successfully precompiled in 9 seconds. 29 already precompiled. Precompiling packages... 1811.5 ms ✓ StructArrays 2956.0 ms ✓ KernelAbstractions → SparseArraysExt 6570.3 ms ✓ ForwardDiff 13729.3 ms ✓ GPUArrays 1359.3 ms ✓ StructArrays → StructArraysSparseArraysExt 2590.0 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 919.8 ms ✓ StructArrays → StructArraysLinearAlgebraExt 876.3 ms ✓ StructArrays → StructArraysAdaptExt 1703.6 ms ✓ StructArrays → StructArraysStaticArraysExt 2059.1 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 13132.1 ms ✓ ChainRules 62383.4 ms ✓ Zygote 12 dependencies successfully precompiled in 111 seconds. 94 already precompiled. Precompiling packages... 11743.2 ms ✓ KernelAbstractions 3148.9 ms ✓ KernelAbstractions → SparseArraysExt 2502.0 ms ✓ KernelAbstractions → LinearAlgebraExt 3072.5 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 15436.6 ms ✓ GPUArrays 8374.1 ms ✓ Zygote → ZygoteDistancesExt 6 dependencies successfully precompiled in 45 seconds. 105 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#140` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 18m43.1s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1131s / 99.2% 29.1GiB / 99.5% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 722s 64.3% 722s 20.3GiB 70.0% 20.3GiB addition 1 407s 36.3% 407s 11.7GiB 40.5% 11.7GiB Standardised Tests (correlated sum) 1 226s 20.1% 226s 6.38GiB 22.1% 6.38GiB adj_ad 9 26.3s 2.3% 2.92s 1.01GiB 3.5% 115MiB adj_fd 9 9.41s 0.8% 1.05s 310MiB 1.0% 34.5MiB Standardised Tests (independent sum) 1 132s 11.8% 132s 5.03GiB 17.4% 5.03GiB adj_ad 9 26.0s 2.3% 2.89s 1.24GiB 4.3% 141MiB adj_fd 9 10.3s 0.9% 1.15s 294MiB 1.0% 32.7MiB Correlated GPs 1 46.3s 4.1% 46.3s 272MiB 0.9% 272MiB Consistency Tests 1 19.3s 1.7% 19.3s 117MiB 0.4% 117MiB Verify mean / kernel numerically 1 2.81s 0.2% 2.81s 39.5MiB 0.1% 39.5MiB Consistency Tests 1 1.51s 0.1% 1.51s 12.3MiB 0.0% 12.3MiB product 1 148s 13.1% 148s 3.92GiB 13.5% 3.92GiB multiply by function 1 86.4s 7.7% 86.4s 2.09GiB 7.2% 2.09GiB Diff Tests 1 50.9s 4.5% 50.9s 1.58GiB 5.5% 1.58GiB adj_ad 9 19.9s 1.8% 2.21s 874MiB 3.0% 97.2MiB adj_fd 9 5.95s 0.5% 661ms 113MiB 0.4% 12.5MiB Consistency Tests 1 5.45s 0.5% 5.45s 101MiB 0.3% 101MiB multiply by constant 1 61.1s 5.4% 61.1s 1.83GiB 6.3% 1.83GiB Diff Tests 1 45.9s 4.1% 45.9s 1.78GiB 6.2% 1.78GiB adj_ad 9 14.9s 1.3% 1.65s 801MiB 2.7% 88.9MiB adj_fd 9 9.89s 0.9% 1.10s 288MiB 1.0% 31.9MiB Consistency Tests 1 3.83s 0.3% 3.83s 17.4MiB 0.1% 17.4MiB GP mul errors 1 12.1ms 0.0% 12.1ms 40.7KiB 0.0% 40.7KiB compose 1 81.5s 7.3% 81.5s 2.39GiB 8.3% 2.39GiB general 1 50.9s 4.5% 50.9s 1.56GiB 5.4% 1.56GiB Diff Tests 1 45.1s 4.0% 45.1s 1.51GiB 5.2% 1.51GiB adj_ad 9 14.4s 1.3% 1.60s 738MiB 2.5% 82.0MiB adj_fd 9 5.51s 0.5% 613ms 115MiB 0.4% 12.8MiB Consistency Tests 1 4.39s 0.4% 4.39s 34.1MiB 0.1% 34.1MiB Stretch 1 24.7s 2.2% 24.7s 748MiB 2.5% 748MiB scalar stretch 1 24.0s 2.1% 24.0s 735MiB 2.5% 735MiB scalar input 1 23.1s 2.1% 23.1s 732MiB 2.5% 732MiB adj_fd 9 8.52s 0.8% 947ms 276MiB 0.9% 30.7MiB adj_ad 9 3.12s 0.3% 346ms 142MiB 0.5% 15.8MiB vector input 1 829ms 0.1% 829ms 3.21MiB 0.0% 3.21MiB Vector stretch 1 624ms 0.1% 624ms 9.77MiB 0.0% 9.77MiB Matrix stretch 1 136ms 0.0% 136ms 2.98MiB 0.0% 2.98MiB Shift 1 3.03s 0.3% 3.03s 39.3MiB 0.1% 39.3MiB Shift{Vector{Float64}} 1 1.59s 0.1% 1.59s 14.1MiB 0.0% 14.1MiB Shift{Float64} 1 1.45s 0.1% 1.45s 25.2MiB 0.1% 25.2MiB Select 1 1.62s 0.1% 1.62s 31.3MiB 0.1% 31.3MiB evaluation 1 724ms 0.1% 724ms 20.2MiB 0.1% 20.2MiB idx isa Vector 1 510ms 0.0% 510ms 7.68MiB 0.0% 7.68MiB idx isa Integer 1 390ms 0.0% 390ms 3.36MiB 0.0% 3.36MiB Periodic 1 1.17s 0.1% 1.17s 33.0MiB 0.1% 33.0MiB cross 1 31.9s 2.8% 31.9s 1.43GiB 4.9% 1.43GiB block arrays 1 17.2s 1.5% 17.2s 791MiB 2.7% 791MiB Stheno._collect ∘ _mortar 1 14.4s 1.3% 14.4s 682MiB 2.3% 682MiB BlockMatrix 1 7.63s 0.7% 7.63s 386MiB 1.3% 386MiB adj_fd 1 978ms 0.1% 978ms 131MiB 0.4% 131MiB adj_ad 1 61.2ms 0.0% 61.2ms 2.36MiB 0.0% 2.36MiB BlockVector 1 6.82s 0.6% 6.82s 296MiB 1.0% 296MiB adj_fd 1 803ms 0.1% 803ms 12.3MiB 0.0% 12.3MiB adj_ad 1 231ms 0.0% 231ms 15.8MiB 0.1% 15.8MiB fdm stuff 1 2.73s 0.2% 2.73s 109MiB 0.4% 109MiB Correctness tests 1 8.86s 0.8% 8.86s 438MiB 1.5% 438MiB Standardised Tests 1 5.87s 0.5% 5.87s 232MiB 0.8% 232MiB gp 1 204s 18.1% 204s 4.50GiB 15.6% 4.50GiB adj_ad 2 21.7s 1.9% 10.9s 834MiB 2.8% 417MiB sparse gp 1 20.9s 1.9% 20.9s 388MiB 1.3% 388MiB SparseFiniteGP inference 1 15.1s 1.3% 15.1s 265MiB 0.9% 265MiB SparseFiniteGP methods 1 5.28s 0.5% 5.28s 118MiB 0.4% 118MiB SparseFiniteGP Constructors 1 423ms 0.0% 423ms 4.12MiB 0.0% 4.12MiB gp 1 18.5s 1.6% 18.5s 363MiB 1.2% 363MiB GP 1 18.1s 1.6% 18.1s 360MiB 1.2% 360MiB independent GPs 1 350ms 0.0% 350ms 2.59MiB 0.0% 2.59MiB wrapped AbstractGP 1 13.8ms 0.0% 13.8ms 288KiB 0.0% 288KiB adj_fd 2 3.00s 0.3% 1.50s 42.4MiB 0.1% 21.2MiB derived_gp 1 166μs 0.0% 166μs 1.92KiB 0.0% 1.92KiB gaussian_process_probabilistic_programme 1 125s 11.1% 125s 2.24GiB 7.8% 2.24GiB Zygote 1 24.6s 2.2% 24.6s 0.97GiB 3.4% 0.97GiB nested gppp 1 14.2s 1.3% 14.2s 84.3MiB 0.3% 84.3MiB External Consistency 1 12.6s 1.1% 12.6s 92.2MiB 0.3% 92.2MiB split 1 692ms 0.1% 692ms 11.5MiB 0.0% 11.5MiB gppp macro 1 50.6ms 0.0% 50.6ms 570KiB 0.0% 570KiB doctests 1 65.5s 5.8% 65.5s 1.71GiB 5.9% 1.71GiB BlockData 1 6.58s 0.6% 6.58s 215MiB 0.7% 215MiB vcat(::GPPPInput...) 1 1.53s 0.1% 1.53s 78.7MiB 0.3% 78.7MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1313.07s PkgEval succeeded after 1415.86s