Package evaluation of ClimaCalibrate on Julia 1.13.0-DEV.1200 (a5576b4ddb*) started at 2025-09-26T00:50:09.537 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.91s ################################################################################ # Installation # Installing ClimaCalibrate... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [4347a170] + ClimaCalibrate v0.1.3 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [14f7f29c] + AMD v0.5.3 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.20.0 [13072b0f] + AxisAlgorithms v1.1.0 [6e4b80f9] + BenchmarkTools v1.6.0 [d360d2e6] + ChainRulesCore v1.26.0 [4347a170] + ClimaCalibrate v0.1.3 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.0 [187b0558] + ConstructionBase v1.6.0 [f65535da] + Convex v0.16.4 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.7 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [aa8a2aa5] + EnsembleKalmanProcesses v2.5.0 [4e289a0a] + EnumX v1.0.5 [c87230d0] + FFMPEG v0.4.4 [7a1cc6ca] + FFTW v1.10.0 [442a2c76] + FastGaussQuadrature v1.0.2 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.14.0 [6a86dc24] + FiniteDiff v2.28.1 [f6369f11] + ForwardDiff v1.2.1 [e4b2fa32] + GaussianRandomFields v2.2.7 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 ⌅ [a98d9a8b] + Interpolations v0.15.1 [92d709cd] + IrrationalConstants v0.2.4 ⌅ [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [40e66cde] + LDLFactorizations v0.10.1 [d3d80556] + LineSearches v7.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [b8f27783] + MathOptInterface v1.45.0 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.6.5 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [c946c3f1] + SCS v2.2.0 [7e506255] + ScopedValues v1.5.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [69024149] + StringEncodings v0.3.7 [856f2bd8] + StructTypes v1.11.0 [9449cd9e] + TSVD v0.4.4 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [efce3f68] + WoodburyMatrices v1.0.0 [ddb6d928] + YAML v0.4.14 ⌅ [68821587] + Arpack_jll v3.5.1+1 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [2e619515] + Expat_jll v2.7.1+0 [b22a6f82] + FFMPEG_jll v7.1.1+0 [f5851436] + FFTW_jll v3.3.11+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [7746bdde] + Glib_jll v2.86.0+0 [3b182d85] + Graphite2_jll v1.3.15+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [c1c5ebd0] + LAME_jll v3.100.3+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [e9f186c6] + Libffi_jll v3.4.7+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.1+0 [38a345b3] + Libuuid_jll v2.41.1+0 [856f044c] + MKL_jll v2025.2.0+0 [e7412a2a] + Ogg_jll v1.3.6+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [91d4177d] + Opus_jll v1.5.2+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [f50d1b31] + Rmath_jll v0.5.1+0 [f4f2fc5b] + SCS_jll v3.2.8+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [a4ae2306] + libaom_jll v3.12.1+0 [0ac62f75] + libass_jll v0.17.4+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [b53b4c65] + libpng_jll v1.6.50+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 7.37s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:76 Precompiling package dependencies... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 7 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_71294.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2272 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007887ee8fe680 Total snapshots: 472. Utilization: 0% ╎472 @Base/task.jl:1137 wait_forever() 471╎ 472 @Base/task.jl:1200 wait() ERROR: LoadError: The following 1 direct dependency failed to precompile: CalibrateEmulateSample Failed to precompile CalibrateEmulateSample [95e48a1f-0bec-4818-9538-3db4340308e3] to "/home/pkgeval/.julia/compiled/v1.13/CalibrateEmulateSample/jl_eKrKig" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `_shrink` not defined in `Base` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] getproperty @ ./Base_compiler.jl:50 [inlined] [2] _precompile_() @ Tullio._Precompile_Base ~/.julia/packages/Tullio/2zyFP/src/precompile/precompile_Base.jl:77 [3] top-level scope @ ~/.julia/packages/Tullio/2zyFP/src/precompile.jl:14 [4] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [5] top-level scope @ ~/.julia/packages/Tullio/2zyFP/src/Tullio.jl:27 [6] include(mod::Module, _path::String) @ Base ./Base.jl:309 [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3069 [8] top-level scope @ stdin:5 [9] eval(m::Module, e::Any) @ Core ./boot.jl:489 [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2915 [11] include_string @ ./loading.jl:2925 [inlined] [12] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [13] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/Tullio/2zyFP/src/precompile.jl:13 in expression starting at /home/pkgeval/.julia/packages/Tullio/2zyFP/src/Tullio.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Tullio [bc48ee85-29a4-5162-ae0b-a64e1601d4bc] to "/home/pkgeval/.julia/compiled/v1.13/Tullio/jl_OWJj3O" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3356 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3234 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2698 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#234 @ ./reflection.jl:1335 [inlined] [9] invokelatest_gr @ ./reflection.jl:1327 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3927 [11] maybe_cachefile_lock @ ./loading.jl:3924 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2684 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2512 [14] macro expansion @ ./loading.jl:2440 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2404 [17] require @ ./loading.jl:2380 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/RandomFeatures/d156W/src/RandomFeatures.jl:11 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3069 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2915 [27] include_string @ ./loading.jl:2925 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [29] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/RandomFeatures/d156W/src/RandomFeatures.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile RandomFeatures [36c3bae2-c0c3-419d-b3b4-eebadd35c5e5] to "/home/pkgeval/.julia/compiled/v1.13/RandomFeatures/jl_E1UPyx" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3356 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3234 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2698 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#234 @ ./reflection.jl:1335 [inlined] [9] invokelatest_gr @ ./reflection.jl:1327 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3927 [11] maybe_cachefile_lock @ ./loading.jl:3924 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2684 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2512 [14] macro expansion @ ./loading.jl:2440 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2404 [17] require @ ./loading.jl:2380 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/CalibrateEmulateSample/H2455/src/RandomFeature.jl:1 [22] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [23] top-level scope @ ~/.julia/packages/CalibrateEmulateSample/H2455/src/Emulator.jl:30 [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [25] top-level scope @ ~/.julia/packages/CalibrateEmulateSample/H2455/src/CalibrateEmulateSample.jl:23 [26] include(mod::Module, _path::String) @ Base ./Base.jl:309 [27] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3069 [28] top-level scope @ stdin:5 [29] eval(m::Module, e::Any) @ Core ./boot.jl:489 [30] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2915 [31] include_string @ ./loading.jl:2925 [inlined] [32] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [33] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/CalibrateEmulateSample/H2455/src/RandomFeature.jl:1 in expression starting at /home/pkgeval/.julia/packages/CalibrateEmulateSample/H2455/src/Emulator.jl:1 in expression starting at /home/pkgeval/.julia/packages/CalibrateEmulateSample/H2455/src/CalibrateEmulateSample.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 2638.63s ################################################################################ # Testing # Testing ClimaCalibrate ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 1 of 1 signal (10): User defined signal 1 unsafe_convert at ./essentials.jl:738 [inlined] _exec at ./pcre.jl:205 exec at ./pcre.jl:199 [inlined] exec_r_data at ./pcre.jl:222 [inlined] match at ./regex.jl:431 match at ./regex.jl:429 [inlined] match at ./regex.jl:474 [inlined] tryparse at ./version.jl:131 parse at ./version.jl:146 [inlined] VersionNumber at ./version.jl:151 [inlined] #init_package_info!##0 at ./none (unknown line) iterate at ./generator.jl:48 [inlined] Dict at ./dict.jl:95 macro expansion at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Registry/registry_instance.jl:205 [inlined] macro expansion at ./lock.jl:376 [inlined] init_package_info! at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Registry/registry_instance.jl:190 registry_info at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Registry/registry_instance.jl:186 [inlined] deps_graph at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:726 resolve_versions! at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:597 #up#188 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2098 up at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2072 [inlined] #up#165 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:436 up at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:406 [inlined] #up#49 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:173 [inlined] up at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:173 [inlined] #resolve#167 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:442 [inlined] resolve at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:441 [inlined] #208 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2421 with_temp_env at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2292 #204 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2405 #mktempdir#21 at ./file.jl:899 unknown function (ip: 0x700914d847a1) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 mktempdir at ./file.jl:895 mktempdir at ./file.jl:895 #sandbox#200 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2352 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2342 unknown function (ip: 0x700914d77c19) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 #test#211 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2616 test at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2522 [inlined] #test#170 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 test at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 unknown function (ip: 0x700914d76f01) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 #test#84 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 unknown function (ip: 0x700914d6cd1a) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 test at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 #test#82 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 test at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [inlined] test at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 unknown function (ip: 0x700914d6bc39) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2272 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:690 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:793 jl_eval_toplevel_stmts at /source/src/toplevel.c:622 jl_toplevel_eval_flex at /source/src/toplevel.c:734 ijl_toplevel_eval at /source/src/toplevel.c:805 ijl_toplevel_eval_in at /source/src/toplevel.c:850 eval at ./boot.jl:489 include_string at ./loading.jl:2915 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:2975 include at ./Base.jl:309 exec_options at ./client.jl:330 _start at ./client.jl:563 jfptr__start_69684.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2272 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x700930c43249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000700916dfc010 Total snapshots: 262. Utilization: 100% ╎262 @Base/client.jl:563 _start() ╎ 262 @Base/client.jl:330 exec_options(opts::Base.JLOptions) ╎ 262 @Base/Base.jl:309 include(mod::Module, _path::String) ╎ 262 @Base/loading.jl:2975 _include(mapexpr::Function, mod::Module, _pat… ╎ 262 @Base/loading.jl:2915 include_string(mapexpr::typeof(identity), mo… ╎ 262 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 262 @Pkg/src/API.jl:155 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 262 @Pkg/src/API.jl:155 #test#81 ╎ ╎ 262 @Pkg/src/API.jl:156 test ╎ ╎ 262 @Pkg/src/API.jl:156 test(pkgs::Vector{String}; kwargs::Base.P… ╎ ╎ 262 @Pkg/src/API.jl:157 kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 262 @Pkg/src/API.jl:168 test(pkgs::Vector{PackageSpec}; io::IOC… ╎ ╎ ╎ 262 @Pkg/src/API.jl:515 kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 262 @Pkg/src/API.jl:538 test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 262 @Pkg/…erations.jl:2522 test ╎ ╎ ╎ 262 @Pkg/…erations.jl:2616 test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 262 @Pkg/…rations.jl:2342 kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 262 @Pkg/…rations.jl:2352 #sandbox#200 ╎ ╎ ╎ ╎ 262 @Base/file.jl:895 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 262 @Base/file.jl:895 mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 262 @Base/file.jl:899 mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 262 @Pkg/…tions.jl:2405 (::Pkg.Operations.var"#204#20… ╎ ╎ ╎ ╎ ╎ 262 @Pkg/…tions.jl:2292 with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 262 @Pkg/…tions.jl:2421 (::Pkg.Operations.var"#208#… ╎ ╎ ╎ ╎ ╎ 262 @Pkg/…c/API.jl:441 resolve ╎ ╎ ╎ ╎ ╎ 262 @Pkg/…/API.jl:442 #resolve#167 ╎ ╎ ╎ ╎ ╎ ╎ 262 @Pkg/…/API.jl:173 up ╎ ╎ ╎ ╎ ╎ ╎ 262 @Pkg/…API.jl:173 #up#49 ╎ ╎ ╎ ╎ ╎ ╎ 262 @Pkg/…API.jl:406 up ╎ ╎ ╎ ╎ ╎ ╎ 262 @Pkg/…API.jl:436 up(ctx::Pkg.Types.Contex… ╎ ╎ ╎ ╎ ╎ ╎ 262 @Pkg/…ons.jl:2072 up ╎ ╎ ╎ ╎ ╎ ╎ ╎ 262 @Pkg/…ons.jl:2098 up(ctx::Pkg.Types.Con… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 262 @Pkg/…ons.jl:597 resolve_versions!(env… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 262 @Pkg/…ons.jl:726 deps_graph(env::Pkg.… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 262 @Pkg/…nce.jl:186 registry_info ╎ ╎ ╎ ╎ ╎ ╎ ╎ 262 @Pkg/…nce.jl:190 init_package_info!… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 262 @Base/…ck.jl:376 macro expansion ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 262 @Pkg/…nce.jl:217 macro expansion ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 262 @Base/…ct.jl:95 Dict{String, Pkg… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 262 @Base/…or.jl:48 iterate ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 262 none:? #init_package_info!##2 ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 262 @Pkg/…ons.jl:229 VersionSpec ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +2 262 @Pkg/…ons.jl:225 VersionSpec ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +3 262 @Base/…ay.jl:443 getindex 261╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +4 262 @Base/…ot.jl:649 Array [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_71294.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2272 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 31588839 (Pool: 31588172; Big: 667); GC: 29 [798] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/HDF5_jll/NQMjC/.pkg/select_artifacts.jl:134 _ZN4llvm11PassBuilder20registerLoopAnalysesERNS_15AnalysisManagerINS_4LoopEJRNS_27LoopStandardAnalysisResultsEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1513 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1474 [inlined] operator() at /source/src/jitlayers.cpp:1649 [inlined] addModule at /source/src/jitlayers.cpp:2106 jl_compile_codeinst_now at /source/src/jitlayers.cpp:663 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:876 jl_compile_method_internal at /source/src/gf.c:3648 _jl_invoke at /source/src/gf.c:4108 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2272 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_fptr_interpret_call at /source/src/interpreter.c:817 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2272 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_fptr_interpret_call at /source/src/interpreter.c:817 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2272 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_fptr_interpret_call at /source/src/interpreter.c:817 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2272 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_fptr_interpret_call at /source/src/interpreter.c:817 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2272 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_fptr_interpret_call at /source/src/interpreter.c:817 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2272 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_fptr_interpret_call at /source/src/interpreter.c:817 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2272 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:690 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:793 jl_eval_toplevel_stmts at /source/src/toplevel.c:622 jl_toplevel_eval_flex at /source/src/toplevel.c:734 ijl_toplevel_eval at /source/src/toplevel.c:805 ijl_toplevel_eval_in at /source/src/toplevel.c:850 eval at ./boot.jl:489 include_string at ./loading.jl:2915 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:2975 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_36147.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2272 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:690 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:793 jl_eval_toplevel_stmts at /source/src/toplevel.c:622 jl_toplevel_eval_flex at /source/src/toplevel.c:734 ijl_toplevel_eval at /source/src/toplevel.c:805 ijl_toplevel_eval_in at /source/src/toplevel.c:850 eval at ./boot.jl:489 exec_options at ./client.jl:296 _start at ./client.jl:563 jfptr__start_69684.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2272 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7028b248a249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 1 (Pool: 1; Big: 0); GC: 0 PkgEval terminated after 2733.39s: test duration exceeded the time limit