Package evaluation of StructuralIdentifiability on Julia 1.13.0-DEV.1184 (441ebf9584*) started at 2025-09-24T02:57:05.157 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.43s ################################################################################ # Installation # Installing StructuralIdentifiability... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [220ca800] + StructuralIdentifiability v0.5.16 Updating `~/.julia/environments/v1.13/Manifest.toml` ⌅ [c3fe647b] + AbstractAlgebra v0.46.5 [a9b6321e] + Atomix v1.1.2 [861a8166] + Combinatorics v1.0.3 [864edb3b] + DataStructures v0.19.1 [e2ba6199] + ExprTools v0.1.10 [0b43b601] + Groebner v0.9.5 [18e54dd8] + IntegerMathUtils v0.1.3 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.1 [1914dd2f] + MacroTools v0.5.16 ⌅ [2edaba10] + Nemo v0.51.1 [bac558e1] + OrderedCollections v1.8.1 [3e851597] + ParamPunPam v0.5.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.11.0 [fb686558] + RandomExtensions v0.4.4 [220ca800] + StructuralIdentifiability v0.5.16 [a759f4b9] + TimerOutputs v0.5.29 [013be700] + UnsafeAtomics v0.3.0 [e134572f] + FLINT_jll v301.300.102+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [3a97d323] + MPFR_jll v4.2.2+0 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.46s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 217.38s ################################################################################ # Testing # Testing StructuralIdentifiability Status `/tmp/jl_4jhROz/Project.toml` ⌅ [c3fe647b] AbstractAlgebra v0.46.5 [4c88cf16] Aqua v0.8.14 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.0.3 [864edb3b] DataStructures v0.19.1 [0b43b601] Groebner v0.9.5 [c8e1da08] IterTools v1.10.0 [1914dd2f] MacroTools v0.5.16 ⌅ [2edaba10] Nemo v0.51.1 [3e851597] ParamPunPam v0.5.3 [aea7be01] PrecompileTools v1.3.3 [27ebfcd6] Primes v0.5.7 [276daf66] SpecialFunctions v2.5.1 [220ca800] StructuralIdentifiability v0.5.16 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_4jhROz/Manifest.toml` ⌅ [c3fe647b] AbstractAlgebra v0.46.5 [4c88cf16] Aqua v0.8.14 [a9b6321e] Atomix v1.1.2 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.0.3 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.0 [adafc99b] CpuId v0.3.1 [864edb3b] DataStructures v0.19.1 [ab62b9b5] DeepDiffs v1.2.0 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [0b43b601] Groebner v0.9.5 [615f187c] IfElse v0.1.1 [18e54dd8] IntegerMathUtils v0.1.3 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 ⌅ [2edaba10] Nemo v0.51.1 [bac558e1] OrderedCollections v1.8.1 [3e851597] ParamPunPam v0.5.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.11.0 [fb686558] RandomExtensions v0.4.4 [431bcebd] SciMLPublic v1.0.0 [276daf66] SpecialFunctions v2.5.1 [aedffcd0] Static v1.3.0 [220ca800] StructuralIdentifiability v0.5.16 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 [e134572f] FLINT_jll v301.300.102+0 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [3a97d323] MPFR_jll v4.2.2+0 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 10353.3 ms ✓ AbstractAlgebra → TestExt 1 dependency successfully precompiled in 11 seconds. 18 already precompiled. Resolving package versions... Updating `/tmp/jl_4jhROz/Project.toml` ⌅ [c3fe647b] ↓ AbstractAlgebra v0.46.5 ⇒ v0.44.13 [loaded: v0.46.5] ⌅ [864edb3b] ↓ DataStructures v0.19.1 ⇒ v0.18.22 [loaded: v0.19.1] [961ee093] + ModelingToolkit v10.23.0 ⌅ [2edaba10] ↓ Nemo v0.51.1 ⇒ v0.49.5 [loaded: v0.51.1] Updating `/tmp/jl_4jhROz/Manifest.toml` [47edcb42] + ADTypes v1.18.0 ⌅ [c3fe647b] ↓ AbstractAlgebra v0.46.5 ⇒ v0.44.13 [loaded: v0.46.5] [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.20.0 [4c555306] + ArrayLayouts v1.11.2 [e2ed5e7c] + Bijections v0.2.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.7.2 [70df07ce] + BracketingNonlinearSolve v1.4.0 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [a80b9123] + CommonMark v0.9.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] ↓ DataStructures v0.19.1 ⇒ v0.18.22 [loaded: v0.19.1] [2b5f629d] + DiffEqBase v6.190.2 [459566f4] + DiffEqCallbacks v4.9.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.7 [8d63f2c5] + DispatchDoctor v0.4.26 [31c24e10] + Distributions v0.25.120 [5b8099bc] + DomainSets v0.7.16 ⌃ [7c1d4256] + DynamicPolynomials v0.6.3 [06fc5a27] + DynamicQuantities v1.10.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.13 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.3 [1a297f60] + FillArrays v1.14.0 [64ca27bc] + FindFirstFunctions v1.4.2 [6a86dc24] + FiniteDiff v2.28.1 [1fa38f19] + Format v1.3.7 ⌃ [f6369f11] + ForwardDiff v0.10.39 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.1 [34004b35] + HypergeometricFunctions v0.3.28 [3263718b] + ImplicitDiscreteSolve v1.2.0 [d25df0c9] + Inflate v0.1.5 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [82899510] + IteratorInterfaceExtensions v1.0.0 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v2.1.6 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.19.1 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.0 [d8e11817] + MLStyle v0.4.17 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [961ee093] + ModelingToolkit v10.23.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 ⌃ [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.6.5 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 ⌅ [2edaba10] ↓ Nemo v0.51.1 ⇒ v0.49.5 [loaded: v0.51.1] [be0214bd] + NonlinearSolveBase v1.16.1 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [bbf590c4] + OrdinaryDiffEqCore v1.34.0 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.6 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.34 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.37.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [9dfe8606] + SCCNonlinearSolve v1.5.0 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.120.0 [19f34311] + SciMLJacobianOperators v0.1.11 [c0aeaf25] + SciMLOperators v1.7.2 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.8.0 [699a6c99] + SimpleTraits v0.9.5 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [7792a7ef] + StrideArraysCore v0.5.8 [2efcf032] + SymbolicIndexingInterface v0.3.44 [19f23fe9] + SymbolicLimits v0.2.3 ⌃ [d1185830] + SymbolicUtils v3.31.0 [0c5d862f] + Symbolics v6.55.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [410a4b4d] + Tricks v0.1.12 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.25.0 [a7c27f48] + Unityper v0.1.6 ⌅ [e134572f] ↓ FLINT_jll v301.300.102+0 ⇒ v300.200.201+0 [loaded: v301.300.102+0] [61579ee1] + Ghostscript_jll v9.55.1+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [f50d1b31] + Rmath_jll v0.5.1+0 [9fa8497b] + Future v1.11.0 [a63ad114] + Mmap v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [4607b0f0] + SuiteSparse Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Resolving package versions... Updating `/tmp/jl_4jhROz/Project.toml` [0c5d862f] + Symbolics v6.55.0 Manifest No packages added to or removed from `/tmp/jl_4jhROz/Manifest.toml` Precompiling packages... 1604.3 ms ✓ PoissonRandom 4535.3 ms ✓ Accessors 3488.9 ms ✓ DispatchDoctor 1924.3 ms ✓ TruncatedStacktraces 1535.7 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 7351.9 ms ✓ MultivariatePolynomials 2273.2 ms ✓ ResettableStacks 1545.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 10102.2 ms ✓ Graphs 6391.7 ms ✓ Latexify 9187.5 ms ✓ ForwardDiff 1654.3 ms ✓ Accessors → StaticArraysExt 1895.3 ms ✓ Accessors → TestExt 1972.4 ms ✓ Accessors → IntervalSetsExt 2144.6 ms ✓ Accessors → LinearAlgebraExt 2236.3 ms ✓ Accessors → UnitfulExt 1535.1 ms ✓ DispatchDoctor → DispatchDoctorChainRulesCoreExt 1090.6 ms ✓ DispatchDoctor → DispatchDoctorEnzymeCoreExt 9794.8 ms ✓ DynamicQuantities 5084.6 ms ✓ DynamicPolynomials 2483.2 ms ✓ Latexify → SparseArraysExt 4777.7 ms ✓ Unitful → LatexifyExt 4308.6 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 3656.8 ms ✓ FastPower → FastPowerForwardDiffExt 3257.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 3387.9 ms ✓ Unitful → ForwardDiffExt 1454.8 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 4539.6 ms ✓ SciMLOperators 4056.3 ms ✓ SymbolicIndexingInterface 2536.2 ms ✓ DynamicQuantities → DynamicQuantitiesLinearAlgebraExt 3948.3 ms ✓ DynamicQuantities → DynamicQuantitiesUnitfulExt 5179.3 ms ✓ NLSolversBase 1125.7 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1590.2 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 3796.1 ms ✓ RecursiveArrayTools 86152.8 ms ✓ SymbolicUtils 7597.4 ms ✓ LineSearches 2337.7 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 24482.2 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 12070.9 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 31199.6 ms ✓ SciMLBase 8390.7 ms ✓ SymbolicLimits 10603.1 ms ✓ Optim 3373.2 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 5785.6 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 31697.4 ms ✓ SciMLBase → SciMLBaseDistributionsExt 5385.4 ms ✓ SciMLBase → SciMLBaseMLStyleExt 8901.1 ms ✓ SciMLJacobianOperators 3427.0 ms ✓ SCCNonlinearSolve 7037.2 ms ✓ DiffEqBase 134655.5 ms ✓ Symbolics 51408.6 ms ✓ LineSearch 12025.5 ms ✓ NonlinearSolveBase 17056.0 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 4969.1 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 3942.3 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 7309.8 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 13355.4 ms ✓ DiffEqCallbacks 9503.2 ms ✓ OrdinaryDiffEqCore 108434.3 ms ✓ Symbolics → SymbolicsForwardDiffExt 10618.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt 64492.7 ms ✓ LineSearch → LineSearchLineSearchesExt 24915.5 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 3430.5 ms ✓ NonlinearSolveBase → NonlinearSolveBaseChainRulesCoreExt 3457.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 37283.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 60939.6 ms ✓ BracketingNonlinearSolve 78792.3 ms ✓ DiffEqNoiseProcess 22337.7 ms ✓ JumpProcesses 16356.3 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 161323.0 ms ✓ Symbolics → SymbolicsPreallocationToolsExt 43042.2 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 3491.4 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 43959.7 ms ✓ SimpleNonlinearSolve 5004.2 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 7713.4 ms ✓ ImplicitDiscreteSolve Info Given ModelingToolkit was explicitly requested, output will be shown live  ┌ Warning: `enqueue!(q::Queue, x)` is deprecated, use `Base.push!(q, x)` instead. │ caller = topsort_equations(eqs::Vector{Symbolics.Equation}, unknowns::Vector{SymbolicUtils.BasicSymbolic}; check::Bool) at alias_elimination.jl:429 └ @ Core ~/.julia/packages/ModelingToolkit/bdYND/src/systems/alias_elimination.jl:429 ┌ Warning: `dequeue!(q::Queue)` is deprecated, use `Base.popfirst!(q)` instead. │ caller = topsort_equations(eqs::Vector{Symbolics.Equation}, unknowns::Vector{SymbolicUtils.BasicSymbolic}; check::Bool) at alias_elimination.jl:436 └ @ Core ~/.julia/packages/ModelingToolkit/bdYND/src/systems/alias_elimination.jl:436 555175.9 ms ✓ ModelingToolkit 77 dependencies successfully precompiled in 1885 seconds. 194 already precompiled. 2 dependencies had output during precompilation: ┌ ModelingToolkit │ [Output was shown above] └ ┌ Graphs │ WARNING: importing deprecated binding DataStructures.IntDisjointSets into Graphs. │ , use IntDisjointSet instead. └ Precompiling packages... 21831.3 ms ✓ AbstractAlgebra 1479.4 ms ✓ FLINT_jll 5640.7 ms ✓ AbstractAlgebra → TestExt ✗ Nemo 9725.8 ms ✓ Groebner → GroebnerDynamicPolynomialsExt 4 dependencies successfully precompiled in 72 seconds. 40 already precompiled. 3 dependencies precompiled but different versions are currently loaded. Restart julia to access the new versions. Otherwise, loading dependents of these packages may trigger further precompilation to work with the unexpected versions. ┌ Error: Error during loading of extension GroebnerDynamicPolynomialsExt of Groebner, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 direct dependency failed to precompile: │ │ Nemo │ │ Failed to precompile Nemo [2edaba10-b0f1-5616-af89-8c11ac63239a] to "/home/pkgeval/.julia/compiled/v1.13/Nemo/jl_QWE4QC" (ProcessExited(1)). │ ERROR: LoadError: cannot declare Nemo.PosInf constant; it was already declared as an import │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:310 │ [3] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Nemo.jl:440 │ [4] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3069 │ [6] top-level scope │ @ stdin:5 │ [7] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:2915 │ [9] include_string │ @ ./loading.jl:2925 [inlined] │ [10] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:328 │ [11] _start() │ @ Base ./client.jl:563 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Nemo.jl:1 │ in expression starting at stdin: └ @ Base loading.jl:1588 Precompiling packages... ✗ Nemo Info Given SymbolicsNemoExt was explicitly requested, output will be shown live  [ Info: Assuming ((1//128)*(√((5120//1)*(a^4)) - (80//1)*(a^2))) != 0 [ Info: Assuming ((1//128)*(√((5120//1)*(a^4)) - (80//1)*(a^2))) != 0 101578.2 ms ✓ Symbolics → SymbolicsNemoExt 1 dependency successfully precompiled in 136 seconds. 158 already precompiled. 1 dependency had output during precompilation: ┌ Symbolics → SymbolicsNemoExt │ [Output was shown above] └ ┌ Error: Error during loading of extension SymbolicsNemoExt of Symbolics, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 direct dependency failed to precompile: │ │ Nemo │ │ Failed to precompile Nemo [2edaba10-b0f1-5616-af89-8c11ac63239a] to "/home/pkgeval/.julia/compiled/v1.13/Nemo/jl_L3Wbun" (ProcessExited(1)). │ ERROR: LoadError: cannot declare Nemo.PosInf constant; it was already declared as an import │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:310 │ [3] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Nemo.jl:440 │ [4] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3069 │ [6] top-level scope │ @ stdin:5 │ [7] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:2915 │ [9] include_string │ @ ./loading.jl:2925 [inlined] │ [10] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:328 │ [11] _start() │ @ Base ./client.jl:563 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Nemo.jl:1 │ in expression starting at stdin: └ @ Base loading.jl:1588 Precompiling packages... ✗ Nemo 19692.3 ms ✓ Symbolics → SymbolicsGroebnerExt 1 dependency successfully precompiled in 53 seconds. 163 already precompiled. ┌ Error: Error during loading of extension SymbolicsGroebnerExt of Symbolics, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 direct dependency failed to precompile: │ │ Nemo │ │ Failed to precompile Nemo [2edaba10-b0f1-5616-af89-8c11ac63239a] to "/home/pkgeval/.julia/compiled/v1.13/Nemo/jl_KjQ15t" (ProcessExited(1)). │ ERROR: LoadError: cannot declare Nemo.PosInf constant; it was already declared as an import │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:310 │ [3] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Nemo.jl:440 │ [4] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3069 │ [6] top-level scope │ @ stdin:5 │ [7] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:2915 │ [9] include_string │ @ ./loading.jl:2925 [inlined] │ [10] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:328 │ [11] _start() │ @ Base ./client.jl:563 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Nemo.jl:1 │ in expression starting at stdin: └ @ Base loading.jl:1588 Precompiling packages... Info Given MTKDeepDiffsExt was explicitly requested, output will be shown live   ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ======================================================================================  cmd: /opt/julia/bin/julia 841 running 1 of 1  signal (10): User defined signal 1 obviously_unequal at /source/src/subtype.c:437 jl_specializations_get_linfo_ at /source/src/gf.c:236 jl_restore_system_image_from_stream_ at /source/src/staticdata.c:4099 jl_restore_package_image_from_stream at /source/src/staticdata.c:4351 ijl_restore_incremental at /source/src/staticdata.c:4429 #_include_from_serialized#880 at ./loading.jl:1275 _include_from_serialized at ./loading.jl:1247 [inlined] #_require_search_from_serialized#899 at ./loading.jl:2089 _require_search_from_serialized at ./loading.jl:1996 [inlined] __require_prelocked at ./loading.jl:2646 _require_prelocked at ./loading.jl:2512 macro expansion at ./loading.jl:2440 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2404 jfptr___require_34934.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:908 require at ./loading.jl:2380 [inlined] eval_import_path at ./module.jl:36 [inlined] eval_import_path_all at ./module.jl:60 _eval_using at ./module.jl:137 jfptr__eval_using_67053.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:690 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:772 jl_eval_module_expr at /source/src/toplevel.c:195 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:657 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 include_string at ./loading.jl:2915 _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 _include at ./loading.jl:2975 include at ./Base.jl:309 include_package_for_output at ./loading.jl:3069 jfptr_include_package_for_output_41579.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:690 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:772 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 include_string at ./loading.jl:2915 include_string at ./loading.jl:2925 [inlined] exec_options at ./client.jl:328 _start at ./client.jl:563 jfptr__start_64951.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7387c92df249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file)   ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ==============================================================  ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 35 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_66252.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000074f78bde4b50 Total snapshots: 832. Utilization: 0% ╎832 @Base/task.jl:1137 wait_forever() 831╎ 832 @Base/task.jl:1200 wait() ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_66252.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007cf986f201f0 Total snapshots: 420. Utilization: 0% ╎420 @Base/task.jl:1137 wait_forever() 419╎ 420 @Base/task.jl:1200 wait() [35] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/runtests.jl:79 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_66252.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 91677958 (Pool: 91675697; Big: 2261); GC: 50 PkgEval terminated after 2784.93s: test duration exceeded the time limit