Package evaluation of OnlinePCA on Julia 1.13.0-DEV.1184 (441ebf9584*) started at 2025-09-24T12:26:23.702 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.93s ################################################################################ # Installation # Installing OnlinePCA... Resolving package versions... Installed MacroTools ────────────────── v0.5.16 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed CodecZstd ─────────────────── v0.8.6 Installed URIs ──────────────────────── v1.6.1 Installed GLM ───────────────────────── v1.9.0 Installed FilePathsBase ─────────────── v0.9.24 Installed DataStructures ────────────── v0.19.1 Installed libaec_jll ────────────────── v1.1.4+0 Installed InlineStrings ─────────────── v1.4.5 Installed FillArrays ────────────────── v1.14.0 Installed HypergeometricFunctions ───── v0.3.28 Installed Mux ───────────────────────── v1.0.2 Installed StatsModels ───────────────── v0.7.7 Installed DelimitedFiles ────────────── v1.9.1 Installed MPICH_jll ─────────────────── v4.3.1+0 Installed CodecZlib ─────────────────── v0.7.8 Installed ConcurrentUtilities ───────── v2.5.0 Installed Observables ───────────────── v0.5.5 Installed AliasTables ───────────────── v1.1.3 Installed StatsBase ─────────────────── v0.34.6 Installed OnlinePCA ─────────────────── v0.3.10 Installed MicrosoftMPI_jll ──────────── v10.1.4+3 Installed ExceptionUnwrapping ───────── v0.1.11 Installed Compat ────────────────────── v4.18.0 Installed ShiftedArrays ─────────────── v2.0.0 Installed OrderedCollections ────────── v1.8.1 Installed TranscodingStreams ────────── v0.11.3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed DataAPI ───────────────────── v1.16.0 Installed InvertedIndices ───────────── v1.3.1 Installed TensorCore ────────────────── v0.1.1 Installed Kaleido_jll ───────────────── v0.2.1+0 Installed Statistics ────────────────── v1.11.1 Installed WebSockets ────────────────── v1.6.0 Installed Xorg_libpciaccess_jll ─────── v0.18.1+0 Installed DataValueInterfaces ───────── v1.0.0 Installed StatsAPI ──────────────────── v1.7.1 Installed Hiccup ────────────────────── v0.2.2 Installed FunctionalCollections ─────── v0.5.0 Installed Colors ────────────────────── v0.13.1 Installed PrecompileTools ───────────── v1.3.3 Installed ProgressMeter ─────────────── v1.11.0 Installed SentinelArrays ────────────── v1.4.8 Installed MbedTLS ───────────────────── v1.1.9 Installed OpenSSL ───────────────────── v1.5.0 Installed IrrationalConstants ───────── v0.2.4 Installed TextWrap ──────────────────── v1.0.2 Installed LoggingExtras ─────────────── v1.1.0 Installed AssetRegistry ─────────────── v0.1.0 Installed ColorTypes ────────────────── v0.12.1 Installed QuadGK ────────────────────── v2.11.2 Installed Requires ──────────────────── v1.3.1 Installed ColorVectorSpace ──────────── v0.11.0 Installed StringManipulation ────────── v0.4.1 Installed Widgets ───────────────────── v0.6.7 Installed HTTP ──────────────────────── v1.10.17 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed HDF5_jll ──────────────────── v1.14.6+0 Installed Pidfile ───────────────────── v1.3.0 Installed CSV ───────────────────────── v0.10.15 Installed ArgParse ──────────────────── v1.2.0 Installed LogExpFunctions ───────────── v0.3.29 Installed BitFlags ──────────────────── v0.1.9 Installed Distributions ─────────────── v0.25.120 Installed PrettyTables ──────────────── v3.0.10 Installed OpenMPI_jll ───────────────── v5.0.8+0 Installed JSON ──────────────────────── v0.21.4 Installed Hwloc_jll ─────────────────── v2.12.2+0 Installed Rmath ─────────────────────── v0.8.0 Installed Parsers ───────────────────── v2.8.3 Installed MatrixMarket ──────────────── v0.5.2 Installed Parameters ────────────────── v0.12.3 Installed StatsFuns ─────────────────── v1.5.0 Installed PtrArrays ─────────────────── v1.3.0 Installed XML2_jll ──────────────────── v2.13.8+0 Installed Tables ────────────────────── v1.12.1 Installed PlotlyKaleido ─────────────── v2.3.0 Installed Reexport ──────────────────── v1.2.2 Installed SpecialFunctions ──────────── v2.5.1 Installed Preferences ───────────────── v1.5.0 Installed FixedPointNumbers ─────────── v0.8.5 Installed SimpleBufferStream ────────── v1.2.0 Installed PlotlyBase ────────────────── v0.8.21 Installed Missings ──────────────────── v1.2.0 Installed Blink ─────────────────────── v0.12.9 Installed MPIPreferences ────────────── v0.1.11 Installed PooledArrays ──────────────── v1.4.3 Installed WebIO ─────────────────────── v0.8.21 Installed JSExpr ────────────────────── v0.5.4 Installed WeakRefStrings ────────────── v1.4.2 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed JLLWrappers ───────────────── v1.7.1 Installed TableTraits ───────────────── v1.0.1 Installed DataFrames ────────────────── v1.8.0 Installed LaTeXStrings ──────────────── v1.4.0 Installed MbedTLS_jll ───────────────── v2.28.6+2 Installed SortingAlgorithms ─────────── v1.2.2 Installed Mustache ──────────────────── v1.0.21 Installed PDMats ────────────────────── v0.11.35 Installed Crayons ───────────────────── v4.1.1 Installed UnPack ────────────────────── v1.0.2 Installed MPItrampoline_jll ─────────── v5.5.4+0 Installed WorkerUtilities ───────────── v1.6.1 Installed DocStringExtensions ───────── v0.9.5 Installed Lazy ──────────────────────── v0.15.1 Installed HDF5 ──────────────────────── v0.17.2 Installed PlotlyJS ──────────────────── v0.18.17 Installed ColorSchemes ──────────────── v3.31.0 Installing 17 artifacts Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact libaec 49.6 KiB Installed artifact Rmath 121.9 KiB Installed artifact mathjax 18.7 KiB Installed artifact MbedTLS 2.1 MiB Installed artifact XML2 2.5 MiB Installed artifact web 215.6 KiB Installed artifact plotly-base-artifacts 430.0 KiB Installed artifact plotly 2.3 MiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Hwloc 3.5 MiB Installed artifact plotly-artifacts 1.7 MiB Installed artifact Libiconv 1.9 MiB Installed artifact MPICH 3.3 MiB Installed artifact HDF5 5.7 MiB Installed artifact Kaleido 75.3 MiB Installed artifact electronjs_app 79.1 MiB Updating `~/.julia/environments/v1.13/Project.toml` [975b03d1] + OnlinePCA v0.3.10 Updating `~/.julia/environments/v1.13/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [c7e460c6] + ArgParse v1.2.0 [bf4720bc] + AssetRegistry v0.1.0 [d1d4a3ce] + BitFlags v0.1.9 [ad839575] + Blink v0.12.9 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.6 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] + Compat v4.18.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.0 [864edb3b] + DataStructures v0.19.1 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.14.0 [53c48c17] + FixedPointNumbers v0.8.5 [de31a74c] + FunctionalCollections v0.5.0 [38e38edf] + GLM v1.9.0 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.17 [9fb69e20] + Hiccup v0.2.2 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [97c1335a] + JSExpr v0.5.4 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [50d2b5c4] + Lazy v0.15.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [4d4711f2] + MatrixMarket v0.5.2 [739be429] + MbedTLS v1.1.9 [e1d29d7a] + Missings v1.2.0 [ffc61752] + Mustache v1.0.21 [a975b10e] + Mux v1.0.2 [510215fc] + Observables v0.5.5 [975b03d1] + OnlinePCA v0.3.10 [4d8831e6] + OpenSSL v1.5.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [a03496cd] + PlotlyBase v0.8.21 [f0f68f2c] + PlotlyJS v0.18.17 [f2990250] + PlotlyKaleido v2.3.0 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.0.10 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [3eaba693] + StatsModels v0.7.7 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [b718987f] + TextWrap v1.0.2 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [76eceee3] + WorkerUtilities v1.6.1 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [f7e6163d] + Kaleido_jll v0.2.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [c8ffd9c3] + MbedTLS_jll v2.28.6+2 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.8+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.4+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building WebIO ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0eef0765186f7452e52236fa42ca8c9b3c11c6e3/build.log` Building PlotlyJS → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/287e092914da6c91f002aafcf82a2ec065bf94a3/build.log` Installation completed after 86.31s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4841.2 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompilation completed after 601.16s ################################################################################ # Testing # Testing OnlinePCA Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_aiv3kQ/Project.toml` [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.120 [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.14.0 [975b03d1] + OnlinePCA v0.3.10 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [37e2e46d] ~ LinearAlgebra ⇒ v1.13.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.13.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_aiv3kQ/Manifest.toml` [bf4720bc] + AssetRegistry v0.1.0 [d1d4a3ce] + BitFlags v0.1.9 [ad839575] + Blink v0.12.9 [336ed68f] + CSV v0.10.15 [944b1d66] ↑ CodecZlib v0.7.6 ⇒ v0.7.8 [6b39b394] + CodecZstd v0.8.6 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] ↑ Compat v4.16.0 ⇒ v4.18.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [a93c6f00] + DataFrames v1.8.0 [864edb3b] ↑ DataStructures v0.18.20 ⇒ v0.19.1 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.120 [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.14.0 [53c48c17] + FixedPointNumbers v0.8.5 [de31a74c] + FunctionalCollections v0.5.0 [38e38edf] + GLM v1.9.0 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.17 [9fb69e20] + Hiccup v0.2.2 [34004b35] ↑ HypergeometricFunctions v0.3.24 ⇒ v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] ↑ JLLWrappers v1.5.0 ⇒ v1.7.1 [97c1335a] + JSExpr v0.5.4 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [50d2b5c4] + Lazy v0.15.1 [2ab3a3ac] ↑ LogExpFunctions v0.3.28 ⇒ v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.9 [ffc61752] + Mustache v1.0.21 [a975b10e] + Mux v1.0.2 [510215fc] + Observables v0.5.5 [975b03d1] + OnlinePCA v0.3.10 [4d8831e6] + OpenSSL v1.5.0 [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.1 [90014a1f] ↑ PDMats v0.11.31 ⇒ v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [a03496cd] + PlotlyBase v0.8.21 [f0f68f2c] + PlotlyJS v0.18.17 [f2990250] + PlotlyKaleido v2.3.0 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] ↑ Preferences v1.4.3 ⇒ v1.5.0 [08abe8d2] + PrettyTables v3.0.10 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] ↑ PtrArrays v1.2.0 ⇒ v1.3.0 [1fd47b50] ↑ QuadGK v2.10.1 ⇒ v2.11.2 [ae029012] + Requires v1.3.1 [79098fc4] ↑ Rmath v0.7.1 ⇒ v0.8.0 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] ↑ SortingAlgorithms v1.2.1 ⇒ v1.2.2 [276daf66] ↑ SpecialFunctions v2.4.0 ⇒ v2.5.1 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [82ae8749] ↑ StatsAPI v1.7.0 ⇒ v1.7.1 [2913bbd2] ↑ StatsBase v0.34.3 ⇒ v0.34.6 [4c63d2b9] ↑ StatsFuns v1.3.1 ⇒ v1.5.0 [3eaba693] + StatsModels v0.7.7 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] ↑ TranscodingStreams v0.11.2 ⇒ v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [76eceee3] + WorkerUtilities v1.6.1 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [f7e6163d] + Kaleido_jll v0.2.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [c8ffd9c3] ↑ MbedTLS_jll v2.28.2+1 ⇒ v2.28.6+2 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0 [f50d1b31] ↑ Rmath_jll v0.4.3+0 ⇒ v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.8+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.4+0 [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] ↑ Downloads v1.6.0 ⇒ v1.7.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [76f85450] ~ LibGit2 ⇒ v1.11.0 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.13.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] ~ Mmap ⇒ v1.11.0 [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0 [44cfe95a] ↑ Pkg v1.10.0 ⇒ v1.13.0 [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] ~ REPL ⇒ v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [6462fe0b] ~ Sockets ⇒ v1.11.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.13.0 [f489334b] + StyledStrings v1.11.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] ↑ CompilerSupportLibraries_jll v1.1.1+0 ⇒ v1.3.0+1 [deac9b47] ↑ LibCURL_jll v8.4.0+0 ⇒ v8.16.0+0 [e37daf67] ↑ LibGit2_jll v1.6.4+0 ⇒ v1.9.1+0 [29816b5a] ↑ LibSSH2_jll v1.11.0+1 ⇒ v1.11.3+1 [14a3606d] ↑ MozillaCACerts_jll v2023.1.10 ⇒ v2025.9.9 [4536629a] ↑ OpenBLAS_jll v0.3.23+4 ⇒ v0.3.29+0 [05823500] ↑ OpenLibm_jll v0.8.1+2 ⇒ v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] ↑ SuiteSparse_jll v7.2.1+1 ⇒ v7.10.1+0 [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] ↑ libblastrampoline_jll v5.8.0+1 ⇒ v5.13.1+0 [8e850ede] ↑ nghttp2_jll v1.52.0+1 ⇒ v1.67.1+0 [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_aiv3kQ/Project.toml` [c7e460c6] ArgParse v1.2.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.120 [1a297f60] FillArrays v1.14.0 [4d4711f2] MatrixMarket v0.5.2 [975b03d1] OnlinePCA v0.3.10 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.13.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_aiv3kQ/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [c7e460c6] ArgParse v1.2.0 [bf4720bc] AssetRegistry v0.1.0 [d1d4a3ce] BitFlags v0.1.9 [ad839575] Blink v0.12.9 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.6 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [34da2185] Compat v4.18.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.0 [864edb3b] DataStructures v0.19.1 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.14.0 [53c48c17] FixedPointNumbers v0.8.5 [de31a74c] FunctionalCollections v0.5.0 [38e38edf] GLM v1.9.0 [f67ccb44] HDF5 v0.17.2 [cd3eb016] HTTP v1.10.17 [9fb69e20] Hiccup v0.2.2 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [97c1335a] JSExpr v0.5.4 [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [50d2b5c4] Lazy v0.15.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [4d4711f2] MatrixMarket v0.5.2 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [ffc61752] Mustache v1.0.21 [a975b10e] Mux v1.0.2 [510215fc] Observables v0.5.5 [975b03d1] OnlinePCA v0.3.10 [4d8831e6] OpenSSL v1.5.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [a03496cd] PlotlyBase v0.8.21 [f0f68f2c] PlotlyJS v0.18.17 [f2990250] PlotlyKaleido v2.3.0 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.0.10 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [91c51154] SentinelArrays v1.4.8 [1277b4bf] ShiftedArrays v2.0.0 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.5.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [3eaba693] StatsModels v0.7.7 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [b718987f] TextWrap v1.0.2 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [ea10d353] WeakRefStrings v1.4.2 [0f1e0344] WebIO v0.8.21 [104b5d7c] WebSockets v1.6.0 [cc8bc4a8] Widgets v0.6.7 [76eceee3] WorkerUtilities v1.6.1 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.2+0 [f7e6163d] Kaleido_jll v0.2.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [7cb0a576] MPICH_jll v4.3.1+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [c8ffd9c3] MbedTLS_jll v2.28.6+2 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.8+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.8+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] libaec_jll v1.1.4+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... /tmp/jl_VKdyl2 Running all tests... ####### Binarization of CSV (Julia API) ####### 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 ####### Binarization of CSV (Command line) ####### Precompiling packages... 20785.9 ms ✓ MacroTools 1583.4 ms ✓ InlineStrings 844.7 ms ✓ Reexport 946.3 ms ✓ TensorCore 3717.3 ms ✓ IrrationalConstants 841.5 ms ✓ DataValueInterfaces 887.8 ms ✓ StatsAPI 1097.2 ms ✓ Observables 1339.5 ms ✓ TranscodingStreams 903.9 ms ✓ TextWrap 881.4 ms ✓ LaTeXStrings 1130.7 ms ✓ Statistics 875.5 ms ✓ PtrArrays 895.3 ms ✓ SimpleBufferStream 971.1 ms ✓ DataAPI 1367.8 ms ✓ URIs 912.2 ms ✓ InvertedIndices 943.2 ms ✓ BitFlags 956.2 ms ✓ ShiftedArrays 1056.1 ms ✓ WorkerUtilities 2218.2 ms ✓ FillArrays 875.5 ms ✓ UnPack 1326.5 ms ✓ OrderedCollections 1209.4 ms ✓ DocStringExtensions 813.8 ms ✓ IteratorInterfaceExtensions 5308.8 ms ✓ Crayons 1067.5 ms ✓ DelimitedFiles 2107.2 ms ✓ Requires 1841.9 ms ✓ ConcurrentUtilities 1350.7 ms ✓ SuiteSparse 6999.1 ms ✓ SentinelArrays 1537.2 ms ✓ LoggingExtras 2127.4 ms ✓ ProgressMeter 1365.9 ms ✓ Compat 4034.9 ms ✓ Preferences 1286.0 ms ✓ Pidfile 1793.5 ms ✓ ExceptionUnwrapping 1411.1 ms ✓ FunctionalCollections 7164.2 ms ✓ Lazy 1613.6 ms ✓ Hiccup 2272.1 ms ✓ CodecZstd 1068.6 ms ✓ CodecZlib 2147.4 ms ✓ ArgParse 1363.7 ms ✓ Statistics → SparseArraysExt 9495.0 ms ✓ FixedPointNumbers 1576.5 ms ✓ AliasTables 1059.5 ms ✓ Missings 1131.7 ms ✓ PooledArrays 6500.8 ms ✓ OpenSSL 2286.7 ms ✓ FillArrays → FillArraysSparseArraysExt 1164.9 ms ✓ FillArrays → FillArraysStatisticsExt 1424.6 ms ✓ Parameters 3694.8 ms ✓ DataStructures 1404.9 ms ✓ LogExpFunctions 817.9 ms ✓ TableTraits 1815.1 ms ✓ PDMats 901.8 ms ✓ Compat → CompatLinearAlgebraExt 1154.2 ms ✓ PrecompileTools 1270.7 ms ✓ JLLWrappers 1435.4 ms ✓ MPIPreferences 1404.2 ms ✓ MatrixMarket 3467.9 ms ✓ ColorTypes 1156.2 ms ✓ SortingAlgorithms 2242.9 ms ✓ QuadGK 1796.2 ms ✓ Tables 1542.0 ms ✓ FillArrays → FillArraysPDMatsExt 2207.3 ms ✓ FilePathsBase 6435.3 ms ✓ StringManipulation 48045.9 ms ✓ Parsers 1508.6 ms ✓ Kaleido_jll 1547.6 ms ✓ Rmath_jll 1257.3 ms ✓ MicrosoftMPI_jll 1517.5 ms ✓ OpenSpecFun_jll 1719.8 ms ✓ libaec_jll 1567.2 ms ✓ Xorg_libpciaccess_jll 1637.4 ms ✓ Libiconv_jll 1809.0 ms ✓ MbedTLS_jll 5309.1 ms ✓ MPItrampoline_jll 1341.4 ms ✓ ColorTypes → StyledStringsExt 14784.5 ms ✓ Colors 6546.4 ms ✓ ColorVectorSpace 5423.2 ms ✓ StatsBase 1338.1 ms ✓ Mustache 3172.2 ms ✓ FilePathsBase → FilePathsBaseTestExt 975.3 ms ✓ FilePathsBase → FilePathsBaseMmapExt 119812.7 ms ✓ PrettyTables 4795.6 ms ✓ JSON 1037.1 ms ✓ InlineStrings → ParsersExt 1564.1 ms ✓ Rmath 5867.7 ms ✓ SpecialFunctions 1746.7 ms ✓ XML2_jll 3428.3 ms ✓ MbedTLS 1858.1 ms ✓ Widgets 10131.7 ms ✓ ColorSchemes 265977.7 ms ✓ DataFrames 1499.2 ms ✓ PlotlyKaleido 1524.7 ms ✓ AssetRegistry 2732.3 ms ✓ WeakRefStrings 2601.6 ms ✓ HypergeometricFunctions 1427.5 ms ✓ ColorVectorSpace → SpecialFunctionsExt 1666.9 ms ✓ Hwloc_jll HTTP Waiting for background task / IO / timer. [pid 1545] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 1545] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 1545] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 1545] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 1545] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 1545] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 1545] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. 193896.0 ms ✓ HTTP 13189.8 ms ✓ PlotlyBase 102967.2 ms ✓ CSV 5098.9 ms ✓ StatsFuns 5969.0 ms ✓ MPICH_jll 5338.1 ms ✓ OpenMPI_jll 4750.3 ms ✓ WebSockets 9486.3 ms ✓ Mux 15739.2 ms ✓ PlotlyBase → DataFramesExt 5289.7 ms ✓ StatsModels 9929.6 ms ✓ Distributions 8335.8 ms ✓ HDF5_jll 9742.0 ms ✓ WebIO 4977.5 ms ✓ GLM 3546.9 ms ✓ Distributions → DistributionsTestExt 8699.8 ms ✓ PlotlyBase → DistributionsExt 24675.6 ms ✓ HDF5 7407.4 ms ✓ JSExpr 12617.4 ms ✓ Blink 20664.9 ms ✓ PlotlyJS 10877.7 ms ✓ PlotlyJS → CSVExt 17592.0 ms ✓ PlotlyJS → DataFramesExt 17505.9 ms ✓ OnlinePCA 124 dependencies successfully precompiled in 1203 seconds. 39 already precompiled. 3 dependencies had output during precompilation: ┌ WebSockets │ WARNING: Imported binding Logging.termlength was undeclared at import time during import to WebSockets. │ WARNING: Imported binding Logging.showvalue was undeclared at import time during import to WebSockets. └ ┌ HTTP │ ┌ Info: Ignoring an error that occurred during the precompilation workload │ │ exception = │ │ HTTP.ConnectError for url = `https://localhost:57813`: TimeoutException: try_with_timeout timed out after 30.0 seconds │ │ Stacktrace: │ │ [1] (::HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}})(req::HTTP.Messages.Request; proxy::Nothing, socket_type::Type, socket_type_tls::Nothing, readtimeout::Int64, connect_timeout::Int64, logerrors::Bool, logtag::Nothing, closeimmediately::Bool, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.ConnectionRequest ~/.julia/packages/HTTP/JcAHX/src/clientlayers/ConnectionRequest.jl:88 │ │ [2] connections │ │ @ ~/.julia/packages/HTTP/JcAHX/src/clientlayers/ConnectionRequest.jl:60 [inlined] │ │ [3] (::Base.var"#47#48"{Base.var"#49#50"{ExponentialBackOff, HTTP.RetryRequest.var"#retrylayer##2#retrylayer##3"{Int64, typeof(HTTP.RetryRequest.FALSE), HTTP.Messages.Request, Base.RefValue{Int64}}, HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}})(args::HTTP.Messages.Request; kwargs::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ Base ./error.jl:309 │ │ [4] kwcall(::@NamedTuple{iofunction::Nothing, decompress::Nothing, verbose::Int64}, ::Base.var"#47#48"{Base.var"#49#50"{ExponentialBackOff, HTTP.RetryRequest.var"#retrylayer##2#retrylayer##3"{Int64, typeof(HTTP.RetryRequest.FALSE), HTTP.Messages.Request, Base.RefValue{Int64}}, HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}, args::HTTP.Messages.Request) │ │ @ Base ./error.jl:304 │ │ [5] (::HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}})(req::HTTP.Messages.Request; retry::Bool, retries::Int64, retry_delays::ExponentialBackOff, retry_check::Function, retry_non_idempotent::Bool, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.RetryRequest ~/.julia/packages/HTTP/JcAHX/src/clientlayers/RetryRequest.jl:75 │ │ [6] manageretries │ │ @ ~/.julia/packages/HTTP/JcAHX/src/clientlayers/RetryRequest.jl:30 [inlined] │ │ [7] (::HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}})(req::HTTP.Messages.Request; cookies::Bool, cookiejar::HTTP.Cookies.CookieJar, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.CookieRequest ~/.julia/packages/HTTP/JcAHX/src/clientlayers/CookieRequest.jl:42 │ │ [8] managecookies │ │ @ ~/.julia/packages/HTTP/JcAHX/src/clientlayers/CookieRequest.jl:19 [inlined] │ │ [9] (::HTTP.HeadersRequest.var"#defaultheaders#headerslayer##0"{HTTP.HeadersRequest.var"#defaultheaders#1#headerslayer##1"{HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}})(req::HTTP.Messages.Request; iofunction::Nothing, decompress::Nothing, basicauth::Bool, detect_content_type::Bool, canonicalize_headers::Bool, kw::@Kwargs{verbose::Int64}) │ │ @ HTTP.HeadersRequest ~/.julia/packages/HTTP/JcAHX/src/clientlayers/HeadersRequest.jl:71 │ │ [10] defaultheaders │ │ @ ~/.julia/packages/HTTP/JcAHX/src/clientlayers/HeadersRequest.jl:14 [inlined] │ │ [11] (::HTTP.RedirectRequest.var"#redirects#redirectlayer##0"{HTTP.RedirectRequest.var"#redirects#1#redirectlayer##1"{HTTP.HeadersRequest.var"#defaultheaders#headerslayer##0"{HTTP.HeadersRequest.var"#defaultheaders#1#headerslayer##1"{HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}})(req::HTTP.Messages.Request; redirect::Bool, redirect_limit::Int64, redirect_method::Nothing, forwardheaders::Bool, response_stream::Nothing, kw::@Kwargs{verbose::Int64}) │ │ @ HTTP.RedirectRequest ~/.julia/packages/HTTP/JcAHX/src/clientlayers/RedirectRequest.jl:25 │ │ [12] redirects │ │ @ ~/.julia/packages/HTTP/JcAHX/src/clientlayers/RedirectRequest.jl:14 [inlined] │ │ [13] (::HTTP.MessageRequest.var"#makerequest#messagelayer##0"{HTTP.MessageRequest.var"#makerequest#1#messagelayer##1"{HTTP.RedirectRequest.var"#redirects#redirectlayer##0"{HTTP.RedirectRequest.var"#redirects#1#redirectlayer##1"{HTTP.HeadersRequest.var"#defaultheaders#headerslayer##0"{HTTP.HeadersRequest.var"#defaultheaders#1#headerslayer##1"{HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}}}})(method::String, url::URIs.URI, headers::Nothing, body::Vector{UInt8}; copyheaders::Bool, response_stream::Nothing, http_version::HTTP.Strings.HTTPVersion, verbose::Int64, kw::@Kwargs{}) │ │ @ HTTP.MessageRequest ~/.julia/packages/HTTP/JcAHX/src/clientlayers/MessageRequest.jl:35 │ │ [14] makerequest │ │ @ ~/.julia/packages/HTTP/JcAHX/src/clientlayers/MessageRequest.jl:24 [inlined] │ │ [15] request(stack::HTTP.MessageRequest.var"#makerequest#messagelayer##0"{HTTP.MessageRequest.var"#makerequest#1#messagelayer##1"{HTTP.RedirectRequest.var"#redirects#redirectlayer##0"{HTTP.RedirectRequest.var"#redirects#1#redirectlayer##1"{HTTP.HeadersRequest.var"#defaultheaders#headerslayer##0"{HTTP.HeadersRequest.var"#defaultheaders#1#headerslayer##1"{HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}}}}, method::String, url::String, h::Nothing, b::Vector{UInt8}, q::Nothing; headers::Nothing, body::Vector{UInt8}, query::Nothing, kw::@Kwargs{}) │ │ @ HTTP ~/.julia/packages/HTTP/JcAHX/src/HTTP.jl:457 │ │ [16] request(stack::Function, method::String, url::String, h::Nothing, b::Vector{UInt8}, q::Nothing) │ │ @ HTTP ~/.julia/packages/HTTP/JcAHX/src/HTTP.jl:455 │ │ [17] #request#21 │ │ @ ~/.julia/packages/HTTP/JcAHX/src/HTTP.jl:315 [inlined] │ │ ┌[18] request │ │ │ @ ~/.julia/packages/HTTP/JcAHX/src/HTTP.jl:313 [inlined] │ │ ╰──── repeated 2 times │ │ [20] get │ │ @ ~/.julia/packages/HTTP/JcAHX/src/HTTP.jl:518 [inlined] │ │ [21] #51 │ │ @ ~/.julia/packages/HTTP/JcAHX/src/precompile.jl:36 [inlined] │ │ [22] withenv(::HTTP.var"#51#52"{String}, ::Pair{String, Union{Nothing, String}}, ::Vararg{Pair{String, Union{Nothing, String}}}) │ │ @ Base ./env.jl:265 │ │ [23] macro expansion │ │ @ ~/.julia/packages/HTTP/JcAHX/src/precompile.jl:35 [inlined] │ │ [24] macro expansion │ │ @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined] │ │ [25] macro expansion │ │ @ ~/.julia/packages/HTTP/JcAHX/src/precompile.jl:34 [inlined] │ │ [26] macro expansion │ │ @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:121 [inlined] │ │ [27] top-level scope │ │ @ ~/.julia/packages/HTTP/JcAHX/src/precompile.jl:4 │ │ [28] include(mapexpr::Function, mod::Module, _path::String) │ │ @ Base ./Base.jl:310 │ │ [29] top-level scope │ │ @ ~/.julia/packages/HTTP/JcAHX/src/HTTP.jl:643 │ │ [30] include(mod::Module, _path::String) │ │ @ Base ./Base.jl:309 │ │ [31] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ │ @ Base ./loading.jl:3069 │ │ [32] top-level scope │ │ @ stdin:5 │ │ [33] eval(m::Module, e::Any) │ │ @ Core ./boot.jl:489 │ │ [34] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ │ @ Base ./loading.jl:2915 │ │ [35] include_string │ │ @ ./loading.jl:2925 [inlined] │ │ [36] exec_options(opts::Base.JLOptions) │ │ @ Base ./client.jl:328 │ │ [37] _start() │ └ @ Base ./client.jl:563 │ │ [pid 1545] waiting for IO to finish: │ Handle type uv_handle_t->data │ This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. │ │ [pid 1545] waiting for IO to finish: │ Handle type uv_handle_t->data │ This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. │ │ [pid 1545] waiting for IO to finish: │ Handle type uv_handle_t->data │ This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. │ │ [pid 1545] waiting for IO to finish: │ Handle type uv_handle_t->data │ This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. │ │ [pid 1545] waiting for IO to finish: │ Handle type uv_handle_t->data │ This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. │ │ [pid 1545] waiting for IO to finish: │ Handle type uv_handle_t->data │ This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. │ │ [pid 1545] waiting for IO to finish: │ Handle type uv_handle_t->data │ This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. └ ┌ PlotlyBase → DistributionsExt │ WARNING: Constructor for type "Plot" was extended in `DistributionsExt` without explicit qualification or import. │ NOTE: Assumed "Plot" refers to `PlotlyBase.Plot`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Plot end`. │ Hint: To silence the warning, qualify `Plot` as `PlotlyBase.Plot` in the method signature or explicitly `import PlotlyBase: Plot`. └ Parsed args: binfile => /tmp/jl_VKdyl2/Data.zst csvfile => /tmp/jl_VKdyl2/Data.csv 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 ####### Binarization of MM (Julia API) ####### ####### Binarization of MM (Command line) ####### Parsed args: mmfile => /tmp/jl_VKdyl2/Data.mtx binfile => /tmp/jl_VKdyl2/Data.mtx.zst ####### Binarization of Binary COO (Julia API) ####### ####### Binarization of Binary COO (Command line) ####### Parsed args: bincoofile => /tmp/jl_VKdyl2/Data.bincoo binfile => /tmp/jl_VKdyl2/Data.bincoo.zst ####### Summarization (Julia API) ####### 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Command line) ####### Parsed args: binfile => /tmp/jl_VKdyl2/Data.zst outdir => /tmp/jl_62eGef pseudocount => 1.0 mode => dense 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Julia API) ####### 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Command line) ####### Parsed args: binfile => /tmp/jl_VKdyl2/Data.mtx.zst outdir => /tmp/jl_cuZRDu pseudocount => 1.0 mode => sparse_mm 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### HVG (Julia API) ####### Highly Variable Genes are calculated... ####### HVG (Command line) ####### Parsed args: rowvarlist => /tmp/jl_62eGef/Feature_Vars.csv binfile => /tmp/jl_VKdyl2/Data.zst outdir => /tmp/jl_62eGef rowcv2list => /tmp/jl_62eGef/Feature_CV2s.csv rowmeanlist => /tmp/jl_62eGef/Feature_Means.csv Highly Variable Genes are calculated... ####### Filtering (Julia API) ####### ####### Filtering (Command line) ####### Parsed args: input => /tmp/jl_VKdyl2/Data.zst samplelist => /tmp/jl_62eGef/Sample_NoCounts.csv outdir => /tmp/jl_62eGef thr2 => 10 direct1 => + direct2 => + featurelist => /tmp/jl_62eGef/Feature_Means.csv thr1 => 10 Parsed args: input => /tmp/jl_VKdyl2/Data.zst samplelist => outdir => /tmp/jl_62eGef thr2 => 10 direct1 => + direct2 => + featurelist => /tmp/jl_62eGef/Feature_Means.csv thr1 => 10 Parsed args: input => /tmp/jl_VKdyl2/Data.zst samplelist => /tmp/jl_62eGef/Sample_NoCounts.csv outdir => /tmp/jl_62eGef thr2 => 10 direct1 => + direct2 => + featurelist => thr1 => 10 ####### GD (Julia API) ####### ####### GD (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_62eGef" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_VKdyl2/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_62eGef/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_62eGef" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Parsed args: scale => "ftt" logdir => "/tmp/jl_62eGef" initW => "/tmp/jl_62eGef/Eigen_vectors.csv" scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_VKdyl2/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_62eGef/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_62eGef" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Parsed args: scale => "ftt" logdir => "/tmp/jl_62eGef" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_VKdyl2/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_62eGef/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_62eGef" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => "/tmp/jl_62eGef/Loadings.csv" Parsed args: scale => "ftt" logdir => "/tmp/jl_62eGef" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_VKdyl2/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_62eGef/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_62eGef" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing ####### Oja (Julia API) ####### Progress: 1%|▎ | ETA: 0:02:52 Progress: 1%|▍ | ETA: 0:03:14 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:02:43 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:02:49 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:01:32 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 ####### Oja (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_62eGef" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_VKdyl2/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_62eGef/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_62eGef" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:06:27 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_62eGef" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_VKdyl2/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_62eGef/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_62eGef" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:06:50 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_62eGef" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_VKdyl2/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_62eGef/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_62eGef" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:08:53 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_62eGef" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_VKdyl2/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_62eGef/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_62eGef" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1770 running 1 of 1 signal (10): User defined signal 1 unknown function (ip: 0x7bdb9d2c0bf4) at /lib/x86_64-linux-gnu/libc.so.6 malloc at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) operator new at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/new_op.cc:50 _ZN4llvm15AnalysisManagerINS_8FunctionEJEE13getResultImplEPNS_11AnalysisKeyERS1_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:791 operator() at /source/src/jitlayers.cpp:1513 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1474 [inlined] operator() at /source/src/jitlayers.cpp:1649 [inlined] addModule at /source/src/jitlayers.cpp:2106 jl_compile_codeinst_now at /source/src/jitlayers.cpp:682 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:876 jl_compile_method_internal at /source/src/gf.c:3644 _jl_invoke at /source/src/gf.c:4104 [inlined] ijl_apply_generic at /source/src/gf.c:4309 main at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/bin/oja:108 unknown function (ip: 0x7bdb9b8af4cf) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:690 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:772 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 include_string at ./loading.jl:2915 _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 _include at ./loading.jl:2975 include at ./Base.jl:309 exec_options at ./client.jl:330 _start at ./client.jl:563 jfptr__start_64951.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7bdb9d250249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) #= 2151.4 ms =# precompile(Tuple{typeof(Core.kwcall), NamedTuple{(:input, :scale, :pseudocount, :rowmeanlist, :rowvarlist, :colsumlist, :dim, :stepsize, :numepoch, :scheduling, :g, :epsilon, :lower, :upper, :evalfreq, :offsetStoch, :initW, :initV, :logdir, :perm, :cper), Tuple{String, String, Float32, String, String, String, Int64, Float32, Int64, String, Float32, Float32, Int64, Float32, Int64, Float32, Nothing, Nothing, String, Bool, Float32}}, typeof(OnlinePCA.oja)}) #= 19.9 ms =# precompile(Tuple{typeof(Base.setindex!), Array{Float32, 2}, Int64, Int64, Int64}) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 830 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_66252.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== Progress: 1%|▎ | ETA: 0:08:10 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_66252.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007bdb833fc010 Total snapshots: 134. Utilization: 100% ╎128 @Base/client.jl:563 _start() ╎ 128 @Base/client.jl:330 exec_options(opts::Base.JLOptions) ╎ 128 @Base/Base.jl:309 include(mod::Module, _path::String) ╎ 128 @Base/loading.jl:2975 _include(mapexpr::Function, mod::Module, _path… ╎ 128 @Base/loading.jl:2915 include_string(mapexpr::typeof(identity), mod… ╎ 128 @Base/boot.jl:489 eval(m::Module, e::Any) 18╎ ╎ 128 @OnlinePCA/bin/oja:108 main() ╎ ╎ 109 @OnlinePCA/…rc/oja.jl:46 kwcall(::@NamedTuple{input::String, sca… ╎ ╎ 109 @OnlinePCA/…rc/oja.jl:60 oja(; input::String, outdir::Nothing, … 7╎ ╎ 8 @OnlinePCA/…Utils.jl:1209 init(input::String, pseudocount::Flo… ╎ ╎ 1 @Compiler/…infer.jl:1579 typeinf_ext_toplevel(mi::Core.Method… ╎ ╎ ╎ 1 @Compiler/…infer.jl:1571 typeinf_ext_toplevel 1╎ ╎ ╎ 1 @Compiler/…nfer.jl:1564 add_codeinsts_to_jit!(interp::Compi… ╎ ╎ 101 @OnlinePCA/…Utils.jl:1231 init(input::String, pseudocount::Flo… ╎ ╎ 101 @OnlinePCA/…Utils.jl:193 read_csv ╎ ╎ ╎ 101 @DelimitedFiles/….jl:86 readdlm ╎ ╎ ╎ 101 @DelimitedFiles/…jl:86 #readdlm#2 ╎ ╎ ╎ 101 @DelimitedFiles/…l:226 readdlm ╎ ╎ ╎ 101 @DelimitedFiles/…l:226 #readdlm#6 ╎ ╎ ╎ 101 @DelimitedFiles/…l:233 readdlm_auto ╎ ╎ ╎ ╎ 101 @DelimitedFiles/…l:0 readdlm_auto(input::String, dlm::C… ╎ ╎ ╎ ╎ 101 @DelimitedFiles/…:461 readdlm_string(sbuff::String, dl… ╎ ╎ ╎ ╎ 101 @Compiler/…er.jl:1579 typeinf_ext_toplevel(mi::Core.M… ╎ ╎ ╎ ╎ 91 @Compiler/…er.jl:1570 typeinf_ext_toplevel ╎ ╎ ╎ ╎ 91 @Compiler/…r.jl:1387 typeinf_ext(interp::Compiler.N… ╎ ╎ ╎ ╎ ╎ 4 @Compiler/…n.jl:4521 typeinf(interp::Compiler.Nati… ╎ ╎ ╎ ╎ ╎ 4 @Compiler/….jl:4363 typeinf_local(interp::Compile… ╎ ╎ ╎ ╎ ╎ 4 @Compiler/….jl:3814 abstract_eval_basic_statement ╎ ╎ ╎ ╎ ╎ 4 @Compiler/….jl:3857 abstract_eval_basic_stateme… ╎ ╎ ╎ ╎ ╎ 4 @Compiler/…jl:3430 abstract_eval_statement_exp… ╎ ╎ ╎ ╎ ╎ ╎ 4 @Compiler/…jl:3074 abstract_eval_call ╎ ╎ ╎ ╎ ╎ ╎ 4 @Compiler/…l:3056 abstract_call(interp::Comp… ╎ ╎ ╎ ╎ ╎ ╎ 4 @Compiler/…l:2896 abstract_call ╎ ╎ ╎ ╎ ╎ ╎ 4 @Compiler/…l:2903 abstract_call(interp::Co… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:2683 abstract_call_known(int… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1983 abstract_call_builtin(… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:2866 builtin_tfunction(int… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1092 getfield_tfunc(𝕃::Co… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1126 _getfield_tfunc ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1133 _getfield_tfunc ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1150 _getfield_tfunc 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:597 unwrapva ╎ ╎ ╎ ╎ ╎ ╎ 3 @Compiler/…l:2796 abstract_call_known(int… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:120 abstract_call_gf_by_typ… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:342 find_method_matches 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:348 #find_method_matches#… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:338 abstract_call_gf_by_typ… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:167 (::Compiler.var"#infer… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:735 abstract_call_method(… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1036 typeinf_edge(interp… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:1769 specialize_method 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:1782 #specialize_metho… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:252 (::Compiler.var"#infer… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:178 (::Compiler.var"#hand… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:868 abstract_call_method… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:892 abstract_call_metho… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1265 semi_concrete_eva… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:318 ir_abstract_const… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:443 ir_abstract_cons… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:493 argextype ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:493 argextype ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 1 @Compiler/…l:524 argextype(x::A… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +2 1 @Compiler/…l:550 abstract_eval_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +3 1 @Compiler/…l:1224 getindex ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +4 1 @Compiler/…l:1241 getindex ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +5 1 @Compiler/…l:318 getindex ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +6 1 @Base/…ls.jl:11 length 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +7 1 @Base/…ls.jl:10 size ╎ ╎ ╎ ╎ ╎ 87 @Compiler/…n.jl:4528 typeinf(interp::Compiler.Nati… ╎ ╎ ╎ ╎ ╎ 87 @Compiler/…r.jl:232 finish_nocycle(::Compiler.Nat… ╎ ╎ ╎ ╎ ╎ 87 @Compiler/….jl:1032 optimize(interp::Compiler.Na… ╎ ╎ ╎ ╎ ╎ 87 @Compiler/….jl:1059 run_passes_ipo_safe ╎ ╎ ╎ ╎ ╎ 87 @Compiler/…jl:1046 run_passes_ipo_safe(ci::Cor… ╎ ╎ ╎ ╎ ╎ ╎ 83 @Compiler/…jl:1153 convert_to_ircode(ci::Core… ╎ ╎ ╎ ╎ ╎ ╎ 83 @Base/expr.jl:75 copy_exprargs ╎ ╎ ╎ ╎ ╎ ╎ 83 @Base/expr.jl:67 copy_exprs(x::Any) ╎ ╎ ╎ ╎ ╎ ╎ 83 @Base/…pr.jl:41 copy(e::Expr) 83╎ ╎ ╎ ╎ ╎ ╎ 83 @Base/…pr.jl:77 exprarray ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…jl:1154 convert_to_ircode(ci::Core… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…jl:198 Compiler.DebugInfoStream(d… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:629 zeros ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:633 zeros ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:661 Array ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:648 Array 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:588 GenericMemory ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…jl:79 ssa_inlining_pass! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…jl:683 batch_inline!(ir::Compiler… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1871 iterate ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1949 iterate_compact(compact:… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1641 process_node!(compact::… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…jl:2149 adce_pass!(ir::Compiler.IR… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1871 iterate ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1949 iterate_compact(compact::… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1464 process_node!(compact::C… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:365 already_inserted_ssa ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…jl:1320 sroa_pass!(ir::Compiler.IR… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:5 is_known_call(x::Any, func:… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:496 argextype ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:497 argextype ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:532 argextype(x::Any, src::C… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:3611 abstract_eval_globalre… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:3741 abstract_load_all_con… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:3726 scan_leaf_partitions ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:3696 scan_specified_part… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:35 max_world 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:32 last ╎ ╎ ╎ ╎ 10 @Compiler/…er.jl:1571 typeinf_ext_toplevel ╎ ╎ ╎ ╎ 5 @Compiler/…r.jl:1538 add_codeinsts_to_jit!(interp::… ╎ ╎ ╎ ╎ ╎ 5 @Compiler/…r.jl:1387 typeinf_ext(interp::Compiler.… ╎ ╎ ╎ ╎ ╎ 3 @Compiler/….jl:4521 typeinf(interp::Compiler.Nati… ╎ ╎ ╎ ╎ ╎ 3 @Compiler/….jl:4363 typeinf_local(interp::Compil… ╎ ╎ ╎ ╎ ╎ 3 @Compiler/….jl:3814 abstract_eval_basic_stateme… ╎ ╎ ╎ ╎ ╎ 3 @Compiler/…jl:3857 abstract_eval_basic_stateme… ╎ ╎ ╎ ╎ ╎ ╎ 3 @Compiler/…jl:3430 abstract_eval_statement_ex… ╎ ╎ ╎ ╎ ╎ ╎ 3 @Compiler/…l:3074 abstract_eval_call ╎ ╎ ╎ ╎ ╎ ╎ 3 @Compiler/…l:3056 abstract_call(interp::Com… ╎ ╎ ╎ ╎ ╎ ╎ 3 @Compiler/…l:2896 abstract_call ╎ ╎ ╎ ╎ ╎ ╎ 3 @Compiler/…l:2903 abstract_call(interp::C… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @Compiler/…l:2796 abstract_call_known(in… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @Compiler/…l:338 abstract_call_gf_by_ty… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:167 (::Compiler.var"#infe… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:735 abstract_call_method… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1041 typeinf_edge(inter… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:71 get ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:252 (::Compiler.var"#infe… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:178 (::Compiler.var"#han… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:868 abstract_call_metho… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:898 abstract_call_meth… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1319 const_prop_call(… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1414 matching_cache_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:76 pick_const_args!… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:31 pick_const_arg ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 1 @Compiler/…l:86 is_argtype_matc… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +2 1 @Compiler/…l:551 is_lattice_equ… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1348 const_prop_call(… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:4521 typeinf(interp:… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:4363 typeinf_local(… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:3814 abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 1 @Compiler/…l:3857 abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +2 1 @Compiler/…l:3430 abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +3 1 @Compiler/…l:3074 abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +4 1 @Compiler/…l:3056 abstract_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +5 1 @Compiler/…l:2896 abstract_call ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +6 1 @Compiler/…l:2903 abstract_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +7 1 @Compiler/…l:2796 abstract_call… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 1 @Compiler/…l:338 abstract_call_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 1 @Compiler/…l:252 (::Compiler.va… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 1 @Compiler/…l:178 (::Compiler.va… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 1 @Compiler/…l:868 abstract_call_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +12 1 @Compiler/…l:898 abstract_call_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +13 1 @Compiler/…l:1348 const_prop_ca… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +14 1 @Compiler/…l:4528 typeinf(inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +15 1 @Compiler/…l:232 finish_nocycle… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +16 1 @Compiler/…l:1032 optimize(inte… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +17 1 @Compiler/…l:1059 run_passes_ip… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +18 1 @Compiler/…l:1046 run_passes_ip… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +19 1 @Compiler/…l:2146 compact! ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +20 1 @Compiler/…l:2146 compact!(code… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +21 1 @Compiler/…l:807 IncrementalCom… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +22 1 @Compiler/…l:779 Compiler.Incre… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +23 1 @Base/…ay.jl:711 _array_for ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +24 1 @Base/…ay.jl:708 _array_for ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +25 1 @Base/…ay.jl:872 similar ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +26 1 @Base/…ay.jl:416 similar ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +27 1 @Base/…ay.jl:873 similar ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +28 1 @Base/…ot.jl:669 Array ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +29 1 @Base/…ot.jl:661 Array ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +30 1 @Base/…ot.jl:648 Array 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +31 1 @Base/…ot.jl:588 GenericMemory ╎ ╎ ╎ ╎ ╎ 2 @Compiler/….jl:4528 typeinf(interp::Compiler.Nati… ╎ ╎ ╎ ╎ ╎ 2 @Compiler/….jl:232 finish_nocycle(::Compiler.Nat… ╎ ╎ ╎ ╎ ╎ 2 @Compiler/….jl:1032 optimize(interp::Compiler.N… ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…jl:1059 run_passes_ipo_safe ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…jl:1046 run_passes_ipo_safe(ci::Co… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:76 ssa_inlining_pass! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1662 assemble_inline_todo!(ir:… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1413 handle_call! 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1378 compute_inlining_cases(… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1485 sroa_pass!(ir::Compiler.IR… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:192 collect_leaves ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:307 walk_to_defs(compact::Com… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:496 argextype ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:497 argextype ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:532 argextype(x::Any, src:… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:3611 abstract_eval_global… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:3741 abstract_load_all_c… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:3726 scan_leaf_partitio… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:3695 scan_specified_pa… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:277 convert 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…er.jl:57 getproperty 5╎ ╎ ╎ ╎ 5 @Compiler/…r.jl:1564 add_codeinsts_to_jit!(interp::… Progress: 100%|█████████████████████████████████████████| Time: 0:00:18 ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000071841ba27a30 Total snapshots: 129. Utilization: 0% ╎129 @Base/task.jl:1137 wait_forever() 128╎ 129 @Base/task.jl:1200 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_66252.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 33024852 (Pool: 33024078; Big: 774); GC: 43 [830] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/test/test_oja.jl:82 [1770] signal 15: Terminated in expression starting at none:0 ijl_alloc_svec_uninit at /source/src/simplevector.c:76 inst_datatype_inner at /source/src/jltypes.c:2293 jl_apply_tuple_type_v_ at /source/src/jltypes.c:2466 [inlined] ijl_apply_tuple_type_v at /source/src/jltypes.c:2476 _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] jl_f__apply_iterate at /source/src/builtins.c:876 argtypes_to_type at ./../usr/share/julia/Compiler/src/typeutils.jl:55 abstract_call_known at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2795 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2903 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2896 [inlined] abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3056 abstract_eval_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3074 [inlined] abstract_eval_statement_expr at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3430 abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3857 [inlined] abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3814 [inlined] typeinf_local at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4363 jfptr_typeinf_local_87539.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4521 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1387 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1570 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1579 jfptr_typeinf_ext_toplevel_86874.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] jl_type_infer at /source/src/gf.c:463 jl_compile_method_internal at /source/src/gf.c:3632 _jl_invoke at /source/src/gf.c:4104 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] ijl_atexit_hook at /source/src/init.c:263 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7bdb9d250249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 22280194 (Pool: 22279836; Big: 358); GC: 11 _ZNK12_GLOBAL__N_116X86MCCodeEmitter14emitPrefixImplERjRKN4llvm6MCInstERKNS2_15MCSubtargetInfoERNS2_15SmallVectorImplIcEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZNK12_GLOBAL__N_116X86MCCodeEmitter17encodeInstructionERKN4llvm6MCInstERNS1_15SmallVectorImplIcEERNS5_INS1_7MCFixupEEERKNS1_15MCSubtargetInfoE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13MCELFStreamer14emitInstToDataERKNS_6MCInstERKNS_15MCSubtargetInfoE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6X86_MC15emitInstructionERNS_16MCObjectStreamerERKNS_6MCInstERKNS_15MCSubtargetInfoE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13X86AsmPrinter23EmitAndCountInstructionERNS_6MCInstE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13X86AsmPrinter15emitInstructionEPKNS_12MachineInstrE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm10AsmPrinter16emitFunctionBodyEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13X86AsmPrinter20runOnMachineFunctionERNS_15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1628 addModule at /source/src/jitlayers.cpp:2119 jl_compile_codeinst_now at /source/src/jitlayers.cpp:682 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:876 jl_compile_method_internal at /source/src/gf.c:3644 _jl_invoke at /source/src/gf.c:4104 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] jl_f_invokelatest at /source/src/builtins.c:889 profile_printing_listener at ./Base.jl:337 #start_profile_listener##0 at ./Base.jl:355 jfptr_YY.start_profile_listenerYY.YY.0_8724.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 60450690 (Pool: 60449838; Big: 852); GC: 47 PkgEval terminated after 2733.5s: test duration exceeded the time limit