Package evaluation of StructuralIdentifiability on Julia 1.13.0-DEV.1176 (573db77327*) started at 2025-09-21T15:08:25.181 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.57s ################################################################################ # Installation # Installing StructuralIdentifiability... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [220ca800] + StructuralIdentifiability v0.5.16 Updating `~/.julia/environments/v1.13/Manifest.toml` ⌅ [c3fe647b] + AbstractAlgebra v0.46.5 [a9b6321e] + Atomix v1.1.2 [861a8166] + Combinatorics v1.0.3 [864edb3b] + DataStructures v0.19.1 [e2ba6199] + ExprTools v0.1.10 [0b43b601] + Groebner v0.9.5 [18e54dd8] + IntegerMathUtils v0.1.3 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.1 [1914dd2f] + MacroTools v0.5.16 ⌅ [2edaba10] + Nemo v0.51.1 [bac558e1] + OrderedCollections v1.8.1 [3e851597] + ParamPunPam v0.5.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.11.0 [fb686558] + RandomExtensions v0.4.4 [220ca800] + StructuralIdentifiability v0.5.16 [a759f4b9] + TimerOutputs v0.5.29 [013be700] + UnsafeAtomics v0.3.0 [e134572f] + FLINT_jll v301.300.102+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [3a97d323] + MPFR_jll v4.2.2+0 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.73s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 222.69s ################################################################################ # Testing # Testing StructuralIdentifiability Status `/tmp/jl_ZENc9r/Project.toml` ⌅ [c3fe647b] AbstractAlgebra v0.46.5 [4c88cf16] Aqua v0.8.14 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.0.3 [864edb3b] DataStructures v0.19.1 [0b43b601] Groebner v0.9.5 [c8e1da08] IterTools v1.10.0 [1914dd2f] MacroTools v0.5.16 ⌅ [2edaba10] Nemo v0.51.1 [3e851597] ParamPunPam v0.5.3 [aea7be01] PrecompileTools v1.3.3 [27ebfcd6] Primes v0.5.7 [276daf66] SpecialFunctions v2.5.1 [220ca800] StructuralIdentifiability v0.5.16 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_ZENc9r/Manifest.toml` ⌅ [c3fe647b] AbstractAlgebra v0.46.5 [4c88cf16] Aqua v0.8.14 [a9b6321e] Atomix v1.1.2 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.0.3 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.0 [adafc99b] CpuId v0.3.1 [864edb3b] DataStructures v0.19.1 [ab62b9b5] DeepDiffs v1.2.0 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [0b43b601] Groebner v0.9.5 [615f187c] IfElse v0.1.1 [18e54dd8] IntegerMathUtils v0.1.3 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 ⌅ [2edaba10] Nemo v0.51.1 [bac558e1] OrderedCollections v1.8.1 [3e851597] ParamPunPam v0.5.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.11.0 [fb686558] RandomExtensions v0.4.4 [276daf66] SpecialFunctions v2.5.1 [aedffcd0] Static v1.2.0 [220ca800] StructuralIdentifiability v0.5.16 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 [e134572f] FLINT_jll v301.300.102+0 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [3a97d323] MPFR_jll v4.2.2+0 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 9852.9 ms ✓ AbstractAlgebra → TestExt 1 dependency successfully precompiled in 10 seconds. 18 already precompiled. Precompiling packages... 1335.4 ms ✓ OpenSpecFun_jll 5619.9 ms ✓ SpecialFunctions 2 dependencies successfully precompiled in 7 seconds. 10 already precompiled. Resolving package versions... Updating `/tmp/jl_ZENc9r/Project.toml` ⌅ [c3fe647b] ↓ AbstractAlgebra v0.46.5 ⇒ v0.44.13 [loaded: v0.46.5] ⌅ [864edb3b] ↓ DataStructures v0.19.1 ⇒ v0.18.22 [loaded: v0.19.1] [961ee093] + ModelingToolkit v10.22.0 ⌅ [2edaba10] ↓ Nemo v0.51.1 ⇒ v0.49.5 [loaded: v0.51.1] Updating `/tmp/jl_ZENc9r/Manifest.toml` [47edcb42] + ADTypes v1.18.0 ⌅ [c3fe647b] ↓ AbstractAlgebra v0.46.5 ⇒ v0.44.13 [loaded: v0.46.5] [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.20.0 [4c555306] + ArrayLayouts v1.11.2 [e2ed5e7c] + Bijections v0.2.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.7.2 [70df07ce] + BracketingNonlinearSolve v1.4.0 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [a80b9123] + CommonMark v0.9.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] ↓ DataStructures v0.19.1 ⇒ v0.18.22 [loaded: v0.19.1] [2b5f629d] + DiffEqBase v6.190.2 [459566f4] + DiffEqCallbacks v4.9.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.7 [8d63f2c5] + DispatchDoctor v0.4.26 [31c24e10] + Distributions v0.25.120 [5b8099bc] + DomainSets v0.7.16 ⌃ [7c1d4256] + DynamicPolynomials v0.6.3 [06fc5a27] + DynamicQuantities v1.10.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.13 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.3 [1a297f60] + FillArrays v1.14.0 [64ca27bc] + FindFirstFunctions v1.4.2 [6a86dc24] + FiniteDiff v2.28.1 [1fa38f19] + Format v1.3.7 ⌃ [f6369f11] + ForwardDiff v0.10.39 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.1 [34004b35] + HypergeometricFunctions v0.3.28 [3263718b] + ImplicitDiscreteSolve v1.2.0 [d25df0c9] + Inflate v0.1.5 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [82899510] + IteratorInterfaceExtensions v1.0.0 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v2.1.6 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.19.1 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.0 [d8e11817] + MLStyle v0.4.17 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [961ee093] + ModelingToolkit v10.22.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 ⌃ [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.6.5 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 ⌅ [2edaba10] ↓ Nemo v0.51.1 ⇒ v0.49.5 [loaded: v0.51.1] [be0214bd] + NonlinearSolveBase v1.16.1 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [bbf590c4] + OrdinaryDiffEqCore v1.34.0 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.6 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.34 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.37.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [9dfe8606] + SCCNonlinearSolve v1.5.0 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.120.0 [19f34311] + SciMLJacobianOperators v0.1.11 [c0aeaf25] + SciMLOperators v1.7.2 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.8.0 [699a6c99] + SimpleTraits v0.9.5 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [7792a7ef] + StrideArraysCore v0.5.8 [2efcf032] + SymbolicIndexingInterface v0.3.44 [19f23fe9] + SymbolicLimits v0.2.3 ⌃ [d1185830] + SymbolicUtils v3.31.0 [0c5d862f] + Symbolics v6.55.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [410a4b4d] + Tricks v0.1.12 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.25.0 [a7c27f48] + Unityper v0.1.6 ⌅ [e134572f] ↓ FLINT_jll v301.300.102+0 ⇒ v300.200.201+0 [loaded: v301.300.102+0] [61579ee1] + Ghostscript_jll v9.55.1+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [f50d1b31] + Rmath_jll v0.5.1+0 [9fa8497b] + Future v1.11.0 [a63ad114] + Mmap v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [4607b0f0] + SuiteSparse Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Resolving package versions... Updating `/tmp/jl_ZENc9r/Project.toml` [0c5d862f] + Symbolics v6.55.0 Manifest No packages added to or removed from `/tmp/jl_ZENc9r/Manifest.toml` Precompiling packages... 1529.2 ms ✓ CommonSubexpressions 1776.4 ms ✓ PoissonRandom 3067.9 ms ✓ SimpleTraits 3969.6 ms ✓ DispatchDoctor 1743.5 ms ✓ TruncatedStacktraces 2623.5 ms ✓ Accessors → UnitfulExt 1431.1 ms ✓ MaybeInplace 13376.5 ms ✓ CommonMark 5520.4 ms ✓ Static 1314.7 ms ✓ Rmath_jll 3919.9 ms ✓ SciMLOperators 2536.4 ms ✓ SymbolicIndexingInterface 1560.6 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 7890.3 ms ✓ MultivariatePolynomials 1509.6 ms ✓ ResettableStacks 24311.4 ms ✓ ArrayLayouts 2039.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1779.0 ms ✓ Accessors → StaticArraysExt 1480.5 ms ✓ Ghostscript_jll 4143.4 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 3242.7 ms ✓ HypergeometricFunctions 9796.3 ms ✓ ForwardDiff 13118.9 ms ✓ Graphs 1572.5 ms ✓ DispatchDoctor → DispatchDoctorChainRulesCoreExt 948.2 ms ✓ DispatchDoctor → DispatchDoctorEnzymeCoreExt 9004.3 ms ✓ DynamicQuantities 1299.0 ms ✓ MaybeInplace → MaybeInplaceSparseArraysExt 56522.9 ms ✓ JuliaFormatter 1052.2 ms ✓ BitTwiddlingConvenienceFunctions 8754.0 ms ✓ StaticArrayInterface 2611.0 ms ✓ CPUSummary 1673.5 ms ✓ Rmath 1197.7 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 2863.7 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 4450.2 ms ✓ RecursiveArrayTools 5178.5 ms ✓ DynamicPolynomials 3610.2 ms ✓ ArrayLayouts → ArrayLayoutsSparseArraysExt 4943.8 ms ✓ BlockArrays 6755.3 ms ✓ Latexify 20507.4 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 3389.8 ms ✓ FastPower → FastPowerForwardDiffExt 2244.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 3168.6 ms ✓ Unitful → ForwardDiffExt 2072.1 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 2248.7 ms ✓ DynamicQuantities → DynamicQuantitiesLinearAlgebraExt 4066.0 ms ✓ DynamicQuantities → DynamicQuantitiesUnitfulExt 1322.3 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 2480.4 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1220.3 ms ✓ CloseOpenIntervals 1456.8 ms ✓ LayoutPointers 2032.5 ms ✓ PolyesterWeave 3184.4 ms ✓ StatsFuns 2226.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 12457.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 28916.0 ms ✓ SciMLBase 79706.2 ms ✓ SymbolicUtils 3481.6 ms ✓ BlockArrays → BlockArraysAdaptExt 2789.5 ms ✓ Latexify → SparseArraysExt 4350.4 ms ✓ Unitful → LatexifyExt 9881.8 ms ✓ NLSolversBase 3682.5 ms ✓ StrideArraysCore 4976.6 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 1151.6 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 9796.6 ms ✓ Distributions 3400.7 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 6329.5 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 4483.9 ms ✓ SciMLBase → SciMLBaseMLStyleExt 8569.8 ms ✓ SciMLJacobianOperators 3337.2 ms ✓ SCCNonlinearSolve 8600.0 ms ✓ SymbolicLimits 6293.1 ms ✓ LineSearches 1986.4 ms ✓ Polyester 3580.0 ms ✓ Distributions → DistributionsTestExt 3335.2 ms ✓ Distributions → DistributionsChainRulesCoreExt 37590.8 ms ✓ SciMLBase → SciMLBaseDistributionsExt 21856.8 ms ✓ LineSearch 17376.6 ms ✓ NonlinearSolveBase 8168.4 ms ✓ Optim 1953.0 ms ✓ FastBroadcast 191231.7 ms ✓ Symbolics 17873.2 ms ✓ LineSearch → LineSearchLineSearchesExt 4337.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 3560.8 ms ✓ NonlinearSolveBase → NonlinearSolveBaseChainRulesCoreExt 21710.5 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 6499.4 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 8105.0 ms ✓ BracketingNonlinearSolve 2146.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 172921.7 ms ✓ Symbolics → SymbolicsForwardDiffExt 11501.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt 4102.6 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 9182.2 ms ✓ DiffEqBase 19039.1 ms ✓ Symbolics → SymbolicsPreallocationToolsExt 3579.1 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 21906.4 ms ✓ SimpleNonlinearSolve 4381.5 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 4816.3 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 3919.1 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 5765.9 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 9895.8 ms ✓ OrdinaryDiffEqCore 12744.8 ms ✓ DiffEqCallbacks 4132.9 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 41970.5 ms ✓ DiffEqNoiseProcess 3977.8 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 19154.5 ms ✓ JumpProcesses 7505.9 ms ✓ ImplicitDiscreteSolve Info Given ModelingToolkit was explicitly requested, output will be shown live  ┌ Warning: `enqueue!(q::Queue, x)` is deprecated, use `Base.push!(q, x)` instead. │ caller = topsort_equations(eqs::Vector{Symbolics.Equation}, unknowns::Vector{SymbolicUtils.BasicSymbolic}; check::Bool) at alias_elimination.jl:429 └ @ Core ~/.julia/packages/ModelingToolkit/H1QXB/src/systems/alias_elimination.jl:429 ┌ Warning: `dequeue!(q::Queue)` is deprecated, use `Base.popfirst!(q)` instead. │ caller = topsort_equations(eqs::Vector{Symbolics.Equation}, unknowns::Vector{SymbolicUtils.BasicSymbolic}; check::Bool) at alias_elimination.jl:436 └ @ Core ~/.julia/packages/ModelingToolkit/H1QXB/src/systems/alias_elimination.jl:436 666778.2 ms ✓ ModelingToolkit 106 dependencies successfully precompiled in 1860 seconds. 165 already precompiled. 3 dependencies had output during precompilation: ┌ ModelingToolkit │ [Output was shown above] └ ┌ Graphs │ WARNING: importing deprecated binding DataStructures.IntDisjointSets into Graphs. │ , use IntDisjointSet instead. └ ┌ JumpProcesses │ WARNING: importing deprecated binding DataStructures.IntDisjointSets into Graphs. │ , use IntDisjointSet instead. └ Precompiling packages... 21428.2 ms ✓ AbstractAlgebra 1404.0 ms ✓ FLINT_jll 6153.0 ms ✓ AbstractAlgebra → TestExt ✗ Nemo 10749.1 ms ✓ Groebner → GroebnerDynamicPolynomialsExt 4 dependencies successfully precompiled in 75 seconds. 40 already precompiled. 3 dependencies precompiled but different versions are currently loaded. Restart julia to access the new versions. Otherwise, loading dependents of these packages may trigger further precompilation to work with the unexpected versions. ┌ Error: Error during loading of extension GroebnerDynamicPolynomialsExt of Groebner, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 direct dependency failed to precompile: │ │ Nemo │ │ Failed to precompile Nemo [2edaba10-b0f1-5616-af89-8c11ac63239a] to "/home/pkgeval/.julia/compiled/v1.13/Nemo/jl_Rlt1aL" (ProcessExited(1)). │ ERROR: LoadError: cannot declare Nemo.PosInf constant; it was already declared as an import │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:310 │ [3] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Nemo.jl:440 │ [4] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3069 │ [6] top-level scope │ @ stdin:5 │ [7] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:2915 │ [9] include_string │ @ ./loading.jl:2925 [inlined] │ [10] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:328 │ [11] _start() │ @ Base ./client.jl:563 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Nemo.jl:1 │ in expression starting at stdin: └ @ Base loading.jl:1588 Precompiling packages... ✗ Nemo Info Given SymbolicsNemoExt was explicitly requested, output will be shown live  [ Info: Assuming ((1//128)*(√((5120//1)*(a^4)) - (80//1)*(a^2))) != 0 [ Info: Assuming ((1//128)*(√((5120//1)*(a^4)) - (80//1)*(a^2))) != 0 117794.3 ms ✓ Symbolics → SymbolicsNemoExt 1 dependency successfully precompiled in 153 seconds. 158 already precompiled. 1 dependency had output during precompilation: ┌ Symbolics → SymbolicsNemoExt │ [Output was shown above] └ ┌ Error: Error during loading of extension SymbolicsNemoExt of Symbolics, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 direct dependency failed to precompile: │ │ Nemo │ │ Failed to precompile Nemo [2edaba10-b0f1-5616-af89-8c11ac63239a] to "/home/pkgeval/.julia/compiled/v1.13/Nemo/jl_5SPcpH" (ProcessExited(1)). │ ERROR: LoadError: cannot declare Nemo.PosInf constant; it was already declared as an import │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:310 │ [3] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Nemo.jl:440 │ [4] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3069 │ [6] top-level scope │ @ stdin:5 │ [7] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:2915 │ [9] include_string │ @ ./loading.jl:2925 [inlined] │ [10] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:328 │ [11] _start() │ @ Base ./client.jl:563 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Nemo.jl:1 │ in expression starting at stdin: └ @ Base loading.jl:1588 Precompiling packages... ✗ Nemo 22169.1 ms ✓ Symbolics → SymbolicsGroebnerExt 1 dependency successfully precompiled in 58 seconds. 163 already precompiled. ┌ Error: Error during loading of extension SymbolicsGroebnerExt of Symbolics, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 direct dependency failed to precompile: │ │ Nemo │ │ Failed to precompile Nemo [2edaba10-b0f1-5616-af89-8c11ac63239a] to "/home/pkgeval/.julia/compiled/v1.13/Nemo/jl_OO76Cb" (ProcessExited(1)). │ ERROR: LoadError: cannot declare Nemo.PosInf constant; it was already declared as an import │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:310 │ [3] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Nemo.jl:440 │ [4] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3069 │ [6] top-level scope │ @ stdin:5 │ [7] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:2915 │ [9] include_string │ @ ./loading.jl:2925 [inlined] │ [10] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:328 │ [11] _start() │ @ Base ./client.jl:563 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Nemo.jl:1 │ in expression starting at stdin: └ @ Base loading.jl:1588 Precompiling packages... 51190.4 ms ✓ ModelingToolkit → MTKDeepDiffsExt 1 dependency successfully precompiled in 53 seconds. 272 already precompiled. Precompiling packages... ✗ Nemo 66065.0 ms ✓ StructuralIdentifiability → ModelingToolkitSIExt 1 dependency successfully precompiled in 102 seconds. 288 already precompiled. ┌ Error: Error during loading of extension ModelingToolkitSIExt of StructuralIdentifiability, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 direct dependency failed to precompile: │ │ Nemo │ │ Failed to precompile Nemo [2edaba10-b0f1-5616-af89-8c11ac63239a] to "/home/pkgeval/.julia/compiled/v1.13/Nemo/jl_IpMxff" (ProcessExited(1)). │ ERROR: LoadError: cannot declare Nemo.PosInf constant; it was already declared as an import │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:310 │ [3] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Nemo.jl:440 │ [4] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3069 │ [6] top-level scope │ @ stdin:5 │ [7] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:2915 │ [9] include_string │ @ ./loading.jl:2925 [inlined] │ [10] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:328 │ [11] _start() │ @ Base ./client.jl:563 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Nemo.jl:1 │ in expression starting at stdin: └ @ Base loading.jl:1588 [ Info: Testing started ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 43 running 1 of 1 signal (10): User defined signal 1 _ZZN12_GLOBAL__N_18Verifier13visitFunctionERKN4llvm8FunctionEENKUlRKNS1_11InstructionEPKNS1_6MDNodeEE_clES7_SA_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_18Verifier13visitFunctionERKN4llvm8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_18Verifier6verifyERKN4llvm8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm14verifyFunctionERKNS_8FunctionEPNS_11raw_ostreamE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) verifyLLVMIR at /source/src/pipeline.cpp:898 runOnLoop at /source/src/llvm-julia-licm.cpp:356 run at /source/src/llvm-julia-licm.cpp:381 run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE13runSinglePassIS1_St10unique_ptrINS_6detail11PassConceptIS1_S5_JS4_S7_EEESt14default_deleteISD_EEEESt8optionalINS_17PreservedAnalysesEERT_RT0_RS5_S4_S7_RNS_19PassInstrumentationE.isra.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE24runWithoutLoopNestPassesERS1_RS5_S4_S7_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE3runERS1_RS5_S4_S7_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm25FunctionToLoopPassAdaptor3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:791 operator() at /source/src/jitlayers.cpp:1513 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1474 [inlined] operator() at /source/src/jitlayers.cpp:1649 [inlined] addModule at /source/src/jitlayers.cpp:2106 jl_compile_codeinst_now at /source/src/jitlayers.cpp:682 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:876 jl_compile_method_internal at /source/src/gf.c:3644 _jl_invoke at /source/src/gf.c:4104 [inlined] ijl_apply_generic at /source/src/gf.c:4309 @testset at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:0 _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_invoke at /source/src/gf.c:4119 jl_invoke_julia_macro at /source/src/ast.c:1042 jl_expand_macros at /source/src/ast.c:1104 jl_expand_macros at /source/src/ast.c:1153 jl_expand_macros at /source/src/ast.c:1153 jl_expand_macros at /source/src/ast.c:1153 jl_expand_macros at /source/src/ast.c:1153 jl_expand_macros at /source/src/ast.c:1153 jl_expand_macros at /source/src/ast.c:1116 jl_expand_macros at /source/src/ast.c:1153 jl_expand_macros at /source/src/ast.c:1153 jl_expand_macros at /source/src/ast.c:1153 jl_expand_macros at /source/src/ast.c:1116 jl_expand_macros at /source/src/ast.c:1153 jl_expand_macros at /source/src/ast.c:1153 jl_expand_macros at /source/src/ast.c:1153 jl_expand_macros at /source/src/ast.c:1116 jl_expand_macros at /source/src/ast.c:1153 jl_expand_macros at /source/src/ast.c:1116 jl_expand_macros at /source/src/ast.c:1153 jl_expand_macros at /source/src/ast.c:1153 jl_fl_lower at /source/src/ast.c:1182 fl_lower at ./flfrontend.jl:24 jfptr_fl_lower_40234.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] ijl_lower at /source/src/ast.c:1246 jl_toplevel_eval_flex at /source/src/toplevel.c:709 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 include_string at ./loading.jl:2915 _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 _include at ./loading.jl:2975 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_60404.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:690 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:772 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 exec_options at ./client.jl:296 _start at ./client.jl:563 jfptr__start_55122.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x780d654f5249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_27986.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] start_task at /source/src/task.c:1254 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007df24812b760 Total snapshots: 403. Utilization: 0% ╎403 @Base/task.jl:1137 wait_forever() 402╎ 403 @Base/task.jl:1200 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_27986.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] start_task at /source/src/task.c:1254 unknown function (ip: (nil)) at (unknown file) Allocations: 23114413 (Pool: 23113788; Big: 625); GC: 19 [43] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/check_primality_zerodim.jl:1 _ZL13runOnFunctionRN4llvm8FunctionEb.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) unknown function (ip: 0x7fff42cea17f) at (unknown file) unknown function (ip: (nil)) at (unknown file) Allocations: 82632232 (Pool: 82629658; Big: 2574); GC: 60 PkgEval terminated after 2731.43s: test duration exceeded the time limit