Package evaluation of Stheno on Julia 1.13.0-DEV.1176 (573db77327*) started at 2025-09-21T17:37:25.631 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.86s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.2 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.14.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.1 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 3.65s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 49.62s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_NS4K3x/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.33 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_NS4K3x/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.2 [a9b6321e] Atomix v1.1.2 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.26.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.1 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.14.0 [26cc04aa] FiniteDifferences v0.12.33 [f6369f11] ForwardDiff v1.2.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.5 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.38 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.2 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.37+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 13922.1 ms ✓ Stheno 1 dependency successfully precompiled in 16 seconds. 79 already precompiled. Precompiling packages... 8722.9 ms ✓ Documenter 1 dependency successfully precompiled in 9 seconds. 29 already precompiled. Precompiling packages... 2858.6 ms ✓ FiniteDifferences 1 dependency successfully precompiled in 3 seconds. 18 already precompiled. Precompiling packages... 11891.1 ms ✓ ChainRules 6850.8 ms ✓ KernelAbstractions 6361.1 ms ✓ ForwardDiff 3064.5 ms ✓ KernelAbstractions → SparseArraysExt 3007.3 ms ✓ KernelAbstractions → LinearAlgebraExt 2508.3 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 1877.9 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 14480.3 ms ✓ GPUArrays 58197.6 ms ✓ Zygote 9 dependencies successfully precompiled in 109 seconds. 97 already precompiled. Precompiling packages... 10482.1 ms ✓ Zygote → ZygoteDistancesExt 1 dependency successfully precompiled in 11 seconds. 110 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#140` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 18m14.6s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1103s / 99.2% 29.0GiB / 99.5% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 693s 63.3% 693s 20.2GiB 69.9% 20.2GiB addition 1 377s 34.4% 377s 11.7GiB 40.4% 11.7GiB Standardised Tests (correlated sum) 1 213s 19.5% 213s 6.35GiB 22.0% 6.35GiB adj_ad 9 24.0s 2.2% 2.67s 1.00GiB 3.5% 114MiB adj_fd 9 8.45s 0.8% 939ms 310MiB 1.0% 34.4MiB Standardised Tests (independent sum) 1 120s 11.0% 120s 5.00GiB 17.3% 5.00GiB adj_ad 9 23.1s 2.1% 2.57s 1.23GiB 4.2% 139MiB adj_fd 9 9.57s 0.9% 1.06s 294MiB 1.0% 32.6MiB Correlated GPs 1 41.8s 3.8% 41.8s 271MiB 0.9% 271MiB Consistency Tests 1 17.2s 1.6% 17.2s 117MiB 0.4% 117MiB Verify mean / kernel numerically 1 1.96s 0.2% 1.96s 39.3MiB 0.1% 39.3MiB Consistency Tests 1 1.01s 0.1% 1.01s 12.2MiB 0.0% 12.2MiB product 1 153s 14.0% 153s 3.91GiB 13.5% 3.91GiB multiply by function 1 89.1s 8.1% 89.1s 2.08GiB 7.2% 2.08GiB Diff Tests 1 49.8s 4.6% 49.8s 1.58GiB 5.5% 1.58GiB adj_ad 9 19.7s 1.8% 2.19s 871MiB 2.9% 96.8MiB adj_fd 9 5.80s 0.5% 645ms 112MiB 0.4% 12.4MiB Consistency Tests 1 5.82s 0.5% 5.82s 101MiB 0.3% 101MiB multiply by constant 1 63.6s 5.8% 63.6s 1.82GiB 6.3% 1.82GiB Diff Tests 1 47.8s 4.4% 47.8s 1.78GiB 6.2% 1.78GiB adj_ad 9 15.5s 1.4% 1.72s 798MiB 2.7% 88.6MiB adj_fd 9 10.1s 0.9% 1.12s 287MiB 1.0% 31.9MiB Consistency Tests 1 3.82s 0.3% 3.82s 17.3MiB 0.1% 17.3MiB GP mul errors 1 12.1ms 0.0% 12.1ms 40.5KiB 0.0% 40.5KiB compose 1 80.1s 7.3% 80.1s 2.39GiB 8.3% 2.39GiB general 1 48.7s 4.5% 48.7s 1.56GiB 5.4% 1.56GiB Diff Tests 1 43.2s 3.9% 43.2s 1.51GiB 5.2% 1.51GiB adj_ad 9 13.8s 1.3% 1.53s 735MiB 2.5% 81.7MiB adj_fd 9 5.31s 0.5% 590ms 114MiB 0.4% 12.7MiB Consistency Tests 1 4.20s 0.4% 4.20s 34.0MiB 0.1% 34.0MiB Stretch 1 25.6s 2.3% 25.6s 746MiB 2.5% 746MiB scalar stretch 1 24.8s 2.3% 24.8s 733MiB 2.5% 733MiB scalar input 1 24.0s 2.2% 24.0s 729MiB 2.5% 729MiB adj_fd 9 9.21s 0.8% 1.02s 275MiB 0.9% 30.6MiB adj_ad 9 3.10s 0.3% 345ms 141MiB 0.5% 15.7MiB vector input 1 800ms 0.1% 800ms 3.18MiB 0.0% 3.18MiB Vector stretch 1 650ms 0.1% 650ms 9.74MiB 0.0% 9.74MiB Matrix stretch 1 136ms 0.0% 136ms 2.97MiB 0.0% 2.97MiB Shift 1 3.14s 0.3% 3.14s 39.2MiB 0.1% 39.2MiB Shift{Vector{Float64}} 1 1.73s 0.2% 1.73s 14.0MiB 0.0% 14.0MiB Shift{Float64} 1 1.41s 0.1% 1.41s 25.2MiB 0.1% 25.2MiB Select 1 1.57s 0.1% 1.57s 31.2MiB 0.1% 31.2MiB evaluation 1 701ms 0.1% 701ms 20.2MiB 0.1% 20.2MiB idx isa Vector 1 509ms 0.0% 509ms 7.65MiB 0.0% 7.65MiB idx isa Integer 1 356ms 0.0% 356ms 3.35MiB 0.0% 3.35MiB Periodic 1 1.15s 0.1% 1.15s 32.8MiB 0.1% 32.8MiB cross 1 26.5s 2.4% 26.5s 1.42GiB 4.9% 1.42GiB block arrays 1 15.2s 1.4% 15.2s 789MiB 2.7% 789MiB Stheno._collect ∘ _mortar 1 13.3s 1.2% 13.3s 680MiB 2.3% 680MiB BlockMatrix 1 6.76s 0.6% 6.76s 385MiB 1.3% 385MiB adj_fd 1 966ms 0.1% 966ms 131MiB 0.4% 131MiB adj_ad 1 49.4ms 0.0% 49.4ms 2.35MiB 0.0% 2.35MiB BlockVector 1 6.52s 0.6% 6.52s 295MiB 1.0% 295MiB adj_fd 1 800ms 0.1% 800ms 12.3MiB 0.0% 12.3MiB adj_ad 1 221ms 0.0% 221ms 15.8MiB 0.1% 15.8MiB fdm stuff 1 1.88s 0.2% 1.88s 109MiB 0.4% 109MiB Correctness tests 1 6.32s 0.6% 6.32s 437MiB 1.5% 437MiB Standardised Tests 1 4.97s 0.5% 4.97s 231MiB 0.8% 231MiB gp 1 192s 17.5% 192s 4.49GiB 15.6% 4.49GiB adj_ad 2 20.3s 1.9% 10.1s 831MiB 2.8% 416MiB sparse gp 1 18.4s 1.7% 18.4s 391MiB 1.3% 391MiB SparseFiniteGP inference 1 12.9s 1.2% 12.9s 264MiB 0.9% 264MiB SparseFiniteGP methods 1 5.12s 0.5% 5.12s 123MiB 0.4% 123MiB SparseFiniteGP Constructors 1 385ms 0.0% 385ms 4.10MiB 0.0% 4.10MiB gp 1 17.6s 1.6% 17.6s 362MiB 1.2% 362MiB GP 1 17.3s 1.6% 17.3s 359MiB 1.2% 359MiB independent GPs 1 303ms 0.0% 303ms 2.58MiB 0.0% 2.58MiB wrapped AbstractGP 1 11.9ms 0.0% 11.9ms 287KiB 0.0% 287KiB adj_fd 2 2.88s 0.3% 1.44s 42.3MiB 0.1% 21.2MiB derived_gp 1 165μs 0.0% 165μs 1.92KiB 0.0% 1.92KiB gaussian_process_probabilistic_programme 1 134s 12.2% 134s 2.24GiB 7.8% 2.24GiB Zygote 1 25.7s 2.3% 25.7s 0.98GiB 3.4% 0.98GiB nested gppp 1 15.0s 1.4% 15.0s 83.9MiB 0.3% 83.9MiB External Consistency 1 14.1s 1.3% 14.1s 92.1MiB 0.3% 92.1MiB split 1 627ms 0.1% 627ms 11.5MiB 0.0% 11.5MiB gppp macro 1 51.3ms 0.0% 51.3ms 568KiB 0.0% 568KiB doctests 1 69.4s 6.3% 69.4s 1.71GiB 5.9% 1.71GiB BlockData 1 6.23s 0.6% 6.23s 240MiB 0.8% 240MiB vcat(::GPPPInput...) 1 1.54s 0.1% 1.54s 90.1MiB 0.3% 90.1MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1266.61s PkgEval succeeded after 1362.29s