Package evaluation of BioChemicalTreatment on Julia 1.13.0-DEV.1176 (573db77327*) started at 2025-09-22T02:15:17.389 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.42s ################################################################################ # Installation # Installing BioChemicalTreatment... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [c4b0d576] + BioChemicalTreatment v4.1.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.20.0 [4c555306] + ArrayLayouts v1.11.2 [e2ed5e7c] + Bijections v0.2.2 [c4b0d576] + BioChemicalTreatment v4.1.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.7.2 [70df07ce] + BracketingNonlinearSolve v1.4.0 [2a0fbf3d] + CPUSummary v0.2.7 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 ⌅ [861a8166] + Combinatorics v1.0.2 [a80b9123] + CommonMark v0.9.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.0 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [8bb1440f] + DelimitedFiles v1.9.1 [2b5f629d] + DiffEqBase v6.190.2 [459566f4] + DiffEqCallbacks v4.9.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.7 [8d63f2c5] + DispatchDoctor v0.4.26 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [5b8099bc] + DomainSets v0.7.16 ⌃ [7c1d4256] + DynamicPolynomials v0.6.3 [06fc5a27] + DynamicQuantities v1.10.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.13 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.3 [1a297f60] + FillArrays v1.14.0 [64ca27bc] + FindFirstFunctions v1.4.2 [6a86dc24] + FiniteDiff v2.28.1 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.2.1 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.1 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [3263718b] + ImplicitDiscreteSolve v1.2.0 [d25df0c9] + Inflate v0.1.5 [18e54dd8] + IntegerMathUtils v0.1.3 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v2.1.6 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.19.1 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [961ee093] + ModelingToolkit v10.22.0 [16a59e39] + ModelingToolkitStandardLibrary v2.25.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 ⌃ [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.6.5 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [be0214bd] + NonlinearSolveBase v1.16.1 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 [bbf590c4] + OrdinaryDiffEqCore v1.34.0 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.6 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.37.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [9dfe8606] + SCCNonlinearSolve v1.5.0 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.120.0 [19f34311] + SciMLJacobianOperators v0.1.11 [c0aeaf25] + SciMLOperators v1.7.2 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.8.0 [699a6c99] + SimpleTraits v0.9.5 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [7792a7ef] + StrideArraysCore v0.5.8 [2efcf032] + SymbolicIndexingInterface v0.3.44 [19f23fe9] + SymbolicLimits v0.2.3 [d1185830] + SymbolicUtils v3.32.0 [0c5d862f] + Symbolics v6.55.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [410a4b4d] + Tricks v0.1.12 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.25.0 [a7c27f48] + Unityper v0.1.6 [61579ee1] + Ghostscript_jll v9.55.1+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 7.08s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:76 Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: DifferentialEquations Failed to precompile DifferentialEquations [0c46a032-eb83-5123-abaf-570d42b7fbaa] to "/home/pkgeval/.julia/compiled/v1.13/DifferentialEquations/jl_gPw6cT" (ProcessExited(1)). ERROR: LoadError: syntax: invalid assignment location "begin local ##S#334 = nestprob_p # views.jl, line 117 # views.jl, line 117 Base.maybeview(##S#334, 3:Base.lastindex(##S#334)) end" around /home/pkgeval/.julia/packages/BoundaryValueDiffEqFIRK/jSCuy/src/collocation.jl:135 Stacktrace: [1] top-level scope @ ~/.julia/packages/BoundaryValueDiffEqFIRK/jSCuy/src/collocation.jl:117 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [3] top-level scope @ ~/.julia/packages/BoundaryValueDiffEqFIRK/jSCuy/src/BoundaryValueDiffEqFIRK.jl:56 [4] include(mod::Module, _path::String) @ Base ./Base.jl:309 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3069 [6] top-level scope @ stdin:5 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2915 [9] include_string @ ./loading.jl:2925 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [11] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/BoundaryValueDiffEqFIRK/jSCuy/src/collocation.jl:117 in expression starting at /home/pkgeval/.julia/packages/BoundaryValueDiffEqFIRK/jSCuy/src/BoundaryValueDiffEqFIRK.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile BoundaryValueDiffEqFIRK [85d9eb09-370e-4000-bb32-543851f73618] to "/home/pkgeval/.julia/compiled/v1.13/BoundaryValueDiffEqFIRK/jl_JFlpvZ" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3356 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3234 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2698 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#234 @ ./reflection.jl:1335 [inlined] [9] invokelatest_gr @ ./reflection.jl:1327 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3927 [11] maybe_cachefile_lock @ ./loading.jl:3924 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2684 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2512 [14] macro expansion @ ./loading.jl:2440 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2404 [17] require @ ./loading.jl:2380 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/BoundaryValueDiffEq/l3e5k/src/BoundaryValueDiffEq.jl:6 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3069 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2915 [27] include_string @ ./loading.jl:2925 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [29] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/BoundaryValueDiffEq/l3e5k/src/BoundaryValueDiffEq.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile BoundaryValueDiffEq [764a87c0-6b3e-53db-9096-fe964310641d] to "/home/pkgeval/.julia/compiled/v1.13/BoundaryValueDiffEq/jl_6mzd9m" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3356 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3234 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2698 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#234 @ ./reflection.jl:1335 [inlined] [9] invokelatest_gr @ ./reflection.jl:1327 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3927 [11] maybe_cachefile_lock @ ./loading.jl:3924 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2684 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2512 [14] macro expansion @ ./loading.jl:2440 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2404 [17] require @ ./loading.jl:2380 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/DifferentialEquations/eQbP8/src/DifferentialEquations.jl:12 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3069 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2915 [27] include_string @ ./loading.jl:2925 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [29] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/DifferentialEquations/eQbP8/src/DifferentialEquations.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 2270.38s ################################################################################ # Testing # Testing BioChemicalTreatment Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_KoqaI0/Project.toml` [c4b0d576] + BioChemicalTreatment v4.1.0 [82cc6244] + DataInterpolations v8.6.0 [0c46a032] + DifferentialEquations v7.16.1 [e30172f5] + Documenter v1.14.1 [cd3eb016] + HTTP v1.10.17 [8913a72c] + NonlinearSolve v4.11.0 [91a5bcdd] + Plots v1.40.20 [fd094767] + Suppressor v0.2.8 [fdbf4ff8] + XLSX v0.10.4 Updating `/tmp/jl_KoqaI0/Manifest.toml` [a4c015fc] + ANSIColoredPrinters v0.0.1 [a95523ee] + AlmostBlockDiagonals v0.1.10 [dce04be8] + ArgCheck v2.5.0 [aae01518] + BandedMatrices v1.9.4 [c4b0d576] + BioChemicalTreatment v4.1.0 [d1d4a3ce] + BitFlags v0.1.9 [764a87c0] + BoundaryValueDiffEq v5.18.0 [7227322d] + BoundaryValueDiffEqAscher v1.8.0 [56b672f2] + BoundaryValueDiffEqCore v1.11.1 [85d9eb09] + BoundaryValueDiffEqFIRK v1.9.0 [1a22d4ce] + BoundaryValueDiffEqMIRK v1.9.0 [9255f1d6] + BoundaryValueDiffEqMIRKN v1.8.0 [ed55bfe0] + BoundaryValueDiffEqShooting v1.9.0 [fa961155] + CEnum v0.5.0 [6309b1aa] + CodecInflate64 v0.1.3 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [82cc6244] + DataInterpolations v8.6.0 [e2d170a0] + DataValueInterfaces v1.0.0 [bcd4f6db] + DelayDiffEq v5.61.0 [0c46a032] + DifferentialEquations v7.16.1 [b4f34e82] + Distances v0.10.12 [e30172f5] + Documenter v1.14.1 [460bff9d] + ExceptionUnwrapping v0.1.11 [d4d017d3] + ExponentialUtilities v1.27.0 [8f5d6c58] + EzXML v1.2.2 [c87230d0] + FFMPEG v0.4.4 [9d29842c] + FastAlmostBandedMatrices v0.1.5 [442a2c76] + FastGaussQuadrature v1.0.2 [53c48c17] + FixedPointNumbers v0.8.5 [28b8d3ca] + GR v0.73.17 [c145ed77] + GenericSchur v0.5.5 [d7ba0133] + Git v1.5.0 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.10.17 [b5f81e59] + IOCapture v0.2.5 [0c81fc1b] + InputBuffers v1.1.1 [1019f520] + JLFzf v0.1.11 [682c06a0] + JSON v0.21.4 [ba0b0d4f] + Krylov v0.10.2 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[91d4177d] + Opus_jll v1.5.2+0 [36c8627f] + Pango_jll v1.56.4+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [c0090381] + Qt6Base_jll v6.8.2+1 [629bc702] + Qt6Declarative_jll v6.8.2+1 [ce943373] + Qt6ShaderTools_jll v6.8.2+1 [e99dba38] + Qt6Wayland_jll v6.8.2+1 ⌅ [fb77eaff] + Sundials_jll v5.2.3+0 [a44049a8] + Vulkan_Loader_jll v1.3.243+0 [a2964d1f] + Wayland_jll v1.24.0+0 [02c8fc9c] + XML2_jll v2.14.4+0 [ffd25f8a] + XZ_jll v5.8.1+0 [f67eecfb] + Xorg_libICE_jll v1.1.2+0 [c834827a] + Xorg_libSM_jll v1.2.6+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.1+0 [a51aa0fd] + Xorg_libXi_jll v1.8.3+0 [d1454406] + Xorg_libXinerama_jll v1.1.6+0 [ec84b674] + Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [cc61e674] + Xorg_libxkbfile_jll v1.1.3+0 [e920d4aa] + Xorg_xcb_util_cursor_jll v0.1.5+0 [12413925] + Xorg_xcb_util_image_jll v0.4.1+0 [2def613f] + Xorg_xcb_util_jll v0.4.1+0 [975044d2] + Xorg_xcb_util_keysyms_jll v0.4.1+0 [0d47668e] + Xorg_xcb_util_renderutil_jll v0.3.10+0 [c22f9ab0] + Xorg_xcb_util_wm_jll v0.4.2+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [35ca27e7] + eudev_jll v3.2.14+0 [214eeab7] + fzf_jll v0.61.1+0 [a4ae2306] + libaom_jll v3.12.1+0 [0ac62f75] + libass_jll v0.17.4+0 [1183f4f0] + libdecor_jll v0.2.2+0 [2db6ffa8] + libevdev_jll v1.13.4+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [36db933b] + libinput_jll v1.28.1+0 [b53b4c65] + libpng_jll v1.6.50+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [009596ad] + mtdev_jll v1.1.7+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [d8fb68d0] + xkbcommon_jll v1.9.2+0 [3fa0cd96] + REPL v1.11.0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_KoqaI0/Project.toml` [c4b0d576] BioChemicalTreatment v4.1.0 [82cc6244] DataInterpolations v8.6.0 [8bb1440f] DelimitedFiles v1.9.1 [0c46a032] DifferentialEquations v7.16.1 [e30172f5] Documenter v1.14.1 [cd3eb016] HTTP v1.10.17 [23fbe1c1] Latexify v0.16.10 [961ee093] ModelingToolkit v10.22.0 [16a59e39] ModelingToolkitStandardLibrary v2.25.0 [8913a72c] NonlinearSolve v4.11.0 [91a5bcdd] Plots v1.40.20 [189a3867] Reexport v1.2.2 [efcf1570] Setfield v1.1.2 [fd094767] Suppressor v0.2.8 [0c5d862f] Symbolics v6.55.0 [fdbf4ff8] XLSX v0.10.4 [4af54fe1] LazyArtifacts v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_KoqaI0/Manifest.toml` [47edcb42] ADTypes v1.18.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [a95523ee] AlmostBlockDiagonals v0.1.10 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.20.0 [4c555306] ArrayLayouts v1.11.2 [aae01518] BandedMatrices v1.9.4 [e2ed5e7c] Bijections v0.2.2 [c4b0d576] BioChemicalTreatment v4.1.0 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] BlockArrays v1.7.2 [764a87c0] BoundaryValueDiffEq v5.18.0 [7227322d] BoundaryValueDiffEqAscher v1.8.0 [56b672f2] BoundaryValueDiffEqCore v1.11.1 [85d9eb09] BoundaryValueDiffEqFIRK v1.9.0 [1a22d4ce] BoundaryValueDiffEqMIRK v1.9.0 [9255f1d6] BoundaryValueDiffEqMIRKN v1.8.0 [ed55bfe0] BoundaryValueDiffEqShooting v1.9.0 [70df07ce] BracketingNonlinearSolve v1.4.0 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [6309b1aa] CodecInflate64 v0.1.3 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 ⌅ [861a8166] Combinatorics v1.0.2 [a80b9123] CommonMark v0.9.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.0 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [82cc6244] DataInterpolations v8.6.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [bcd4f6db] DelayDiffEq v5.61.0 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.190.2 [459566f4] DiffEqCallbacks v4.9.0 [77a26b50] DiffEqNoiseProcess v5.24.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [0c46a032] DifferentialEquations v7.16.1 [a0c0ee7d] DifferentiationInterface v0.7.7 [8d63f2c5] DispatchDoctor v0.4.26 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.14.1 [5b8099bc] DomainSets v0.7.16 ⌃ [7c1d4256] DynamicPolynomials v0.6.3 [06fc5a27] DynamicQuantities v1.10.0 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.13 [460bff9d] ExceptionUnwrapping v0.1.11 [d4d017d3] ExponentialUtilities v1.27.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [8f5d6c58] EzXML v1.2.2 [c87230d0] FFMPEG v0.4.4 [9d29842c] FastAlmostBandedMatrices v0.1.5 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.0.2 [a4df4552] FastPower v1.1.3 [1a297f60] FillArrays v1.14.0 [64ca27bc] FindFirstFunctions v1.4.2 [6a86dc24] FiniteDiff v2.28.1 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.2.1 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [28b8d3ca] GR v0.73.17 [c145ed77] GenericSchur v0.5.5 [d7ba0133] Git v1.5.0 [c27321d9] Glob v1.3.1 [86223c79] Graphs v1.13.1 [42e2da0e] Grisu v1.0.2 [cd3eb016] HTTP v1.10.17 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [615f187c] IfElse v0.1.1 [3263718b] ImplicitDiscreteSolve v1.2.0 [d25df0c9] Inflate v0.1.5 [0c81fc1b] InputBuffers v1.1.1 [18e54dd8] IntegerMathUtils v0.1.3 [8197267c] IntervalSets v0.7.11 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [1019f520] JLFzf v0.1.11 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 [98e50ef6] JuliaFormatter v2.1.6 ⌅ [70703baa] JuliaSyntax v0.4.10 [ccbc3e58] JumpProcesses v9.19.1 [ba0b0d4f] Krylov v0.10.2 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.10 [10f19ff3] LayoutPointers v0.1.17 [0e77f7df] LazilyInitializedFields v1.3.0 [5078a376] LazyArrays v2.6.3 [2d8b4e74] LevyArea v1.0.0 [87fe0de2] LineSearch v0.1.4 [d3d80556] LineSearches v7.4.0 [7ed4a6bd] LinearSolve v3.40.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [d8e11817] 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 50497.5 ms ✓ Documenter 1 dependency successfully precompiled in 51 seconds. 53 already precompiled. [ Info: Testing ProcessSimulator Submodule: [ Info: Variables [ Info: Port Metadata ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 503 running 1 of 1 signal (10): User defined signal 1 _ZN4llvm19SmallPtrSetImplBase4GrowEj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm19SmallPtrSetImplBase14insert_imp_bigEPKv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11po_iteratorIPKNS_15DomTreeNodeBaseINS_10BasicBlockEEENS_11SmallPtrSetIS5_Lj8EEELb0ENS_11GraphTraitsIS5_EEE13traverseChildEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm12LoopInfoBaseINS_10BasicBlockENS_4LoopEE7analyzeERKNS_17DominatorTreeBaseIS1_Lb0EEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm12LoopAnalysis3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6detail17AnalysisPassModelINS_8FunctionENS_12LoopAnalysisENS_15AnalysisManagerIS2_JEE11InvalidatorEJEE3runERS2_RS5_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15AnalysisManagerINS_8FunctionEJEE13getResultImplEPNS_11AnalysisKeyERS1_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm25ConstraintEliminationPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:791 operator() at /source/src/jitlayers.cpp:1513 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1474 [inlined] operator() at /source/src/jitlayers.cpp:1649 [inlined] addModule at /source/src/jitlayers.cpp:2106 jl_compile_codeinst_now at /source/src/jitlayers.cpp:682 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:876 jl_compile_method_internal at /source/src/gf.c:3644 _jl_invoke at /source/src/gf.c:4104 [inlined] ijl_apply_generic at /source/src/gf.c:4309 gcd at /home/pkgeval/.julia/packages/SymbolicUtils/N76BL/src/polyform.jl:90 _gcd at /home/pkgeval/.julia/packages/SymbolicUtils/N76BL/src/polyform.jl:402 unknown function (ip: 0x778004330bb6) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 rm_gcds at /home/pkgeval/.julia/packages/SymbolicUtils/N76BL/src/polyform.jl:543 unknown function (ip: 0x778004229f0a) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 simplify_div at /home/pkgeval/.julia/packages/SymbolicUtils/N76BL/src/polyform.jl:282 sdiv at /home/pkgeval/.julia/packages/SymbolicUtils/N76BL/src/polyform.jl:336 unknown function (ip: 0x778004311402) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 call_composed at ./operators.jl:1107 [inlined] #_#55 at ./operators.jl:1104 ComposedFunction at ./operators.jl:1104 unknown function (ip: 0x778004312702) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 Walk at /home/pkgeval/.julia/packages/SymbolicUtils/N76BL/src/rewriters.jl:386 unknown function (ip: 0x778004310382) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 #simplify_fractions#123 at /home/pkgeval/.julia/packages/SymbolicUtils/N76BL/src/polyform.jl:338 simplify_fractions at /home/pkgeval/.julia/packages/SymbolicUtils/N76BL/src/polyform.jl:330 unknown function (ip: 0x7780044f3232) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 #simplify#403 at /home/pkgeval/.julia/packages/SymbolicUtils/N76BL/src/simplify.jl:42 simplify at /home/pkgeval/.julia/packages/SymbolicUtils/N76BL/src/simplify.jl:16 unknown function (ip: 0x7780044d9272) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 #simplify#541 at /home/pkgeval/.julia/packages/Symbolics/lJiB2/src/Symbolics.jl:185 simplify at /home/pkgeval/.julia/packages/Symbolics/lJiB2/src/Symbolics.jl:185 unknown function (ip: 0x7780044d9212) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 _broadcast_getindex_evalf at ./broadcast.jl:701 [inlined] _broadcast_getindex at ./broadcast.jl:674 [inlined] _getindex at ./broadcast.jl:622 [inlined] getindex at ./broadcast.jl:618 [inlined] copyto_nonleaf! at ./broadcast.jl:1106 unknown function (ip: 0x7780044f8b45) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_invoke at /source/src/gf.c:4119 restart_copyto_nonleaf! at ./broadcast.jl:1097 unknown function (ip: 0x7780044f81ba) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 copyto_nonleaf! at ./broadcast.jl:1113 unknown function (ip: 0x7780044f6725) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 copy at ./broadcast.jl:943 unknown function (ip: 0x7780044ce8d3) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 materialize at ./broadcast.jl:896 [inlined] #check_composition#17 at /home/pkgeval/.julia/packages/BioChemicalTreatment/EkcEZ/src/Reactions/biochemicalreactionsystem.jl:308 check_composition at /home/pkgeval/.julia/packages/BioChemicalTreatment/EkcEZ/src/Reactions/biochemicalreactionsystem.jl:300 [inlined] macro expansion at /home/pkgeval/.julia/packages/BioChemicalTreatment/EkcEZ/src/ProcessSimulator/processes.jl:105 [inlined] #327 at /home/pkgeval/.julia/packages/ModelingToolkit/H1QXB/src/systems/abstractsystem.jl:2320 #Process#319 at /home/pkgeval/.julia/packages/ModelingToolkit/H1QXB/src/systems/abstractsystem.jl:2320 unknown function (ip: 0x778004447b84) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_invoke at /source/src/gf.c:4119 Process at /home/pkgeval/.julia/packages/ModelingToolkit/H1QXB/src/systems/abstractsystem.jl:2318 unknown function (ip: 0x77800444177d) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:772 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 include_string at ./loading.jl:2915 _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 _include at ./loading.jl:2975 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 unknown function (ip: 0x778044f5ae62) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 macro expansion at /home/pkgeval/.julia/packages/BioChemicalTreatment/EkcEZ/test/runtests.jl:21 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:1952 [inlined] macro expansion at /home/pkgeval/.julia/packages/BioChemicalTreatment/EkcEZ/test/runtests.jl:21 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:1952 [inlined] macro expansion at /home/pkgeval/.julia/packages/BioChemicalTreatment/EkcEZ/test/runtests.jl:10 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:1952 [inlined] top-level scope at /home/pkgeval/.julia/packages/BioChemicalTreatment/EkcEZ/test/runtests.jl:6 _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_invoke at /source/src/gf.c:4119 jl_toplevel_eval_flex at /source/src/toplevel.c:761 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 include_string at ./loading.jl:2915 _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 _include at ./loading.jl:2975 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_60404.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:690 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:772 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 exec_options at ./client.jl:296 _start at ./client.jl:563 jfptr__start_55122.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7780467e8249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_27986.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] start_task at /source/src/task.c:1254 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007f616b2f0100 Total snapshots: 437. Utilization: 0% ╎437 @Base/task.jl:1137 wait_forever() 436╎ 437 @Base/task.jl:1200 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_27986.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] start_task at /source/src/task.c:1254 unknown function (ip: (nil)) at (unknown file) Allocations: 40435112 (Pool: 40434373; Big: 739); GC: 35 [503] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/BioChemicalTreatment/EkcEZ/test/portmetadata_tests.jl:57 _ZNK4llvm9SlotIndex8getIndexEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZNK4llvm11SlotIndexes15getMBBFromIndexENS_9SlotIndexE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13SplitAnalysis17calcLiveBlockInfoEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13SplitAnalysis11analyzeUsesEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm8RAGreedy8trySplitERKNS_12LiveIntervalERNS_15AllocationOrderERNS_15SmallVectorImplINS_8RegisterEEERKNS_8SmallSetIS7_Lj16ESt4lessIS7_EEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm8RAGreedy17selectOrSplitImplERKNS_12LiveIntervalERNS_15SmallVectorImplINS_8RegisterEEERNS_8SmallSetIS5_Lj16ESt4lessIS5_EEERNS_11SmallVectorISt4pairIPS2_NS_10MCRegisterEELj8EEEj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm8RAGreedy13selectOrSplitERKNS_12LiveIntervalERNS_15SmallVectorImplINS_8RegisterEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm12RegAllocBase16allocatePhysRegsEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm8RAGreedy20runOnMachineFunctionERNS_15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1628 addModule at /source/src/jitlayers.cpp:2119 jl_compile_codeinst_now at /source/src/jitlayers.cpp:682 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:876 jl_compile_method_internal at /source/src/gf.c:3644 _jl_invoke at /source/src/gf.c:4104 [inlined] ijl_apply_generic at /source/src/gf.c:4309 gcd at /home/pkgeval/.julia/packages/SymbolicUtils/N76BL/src/polyform.jl:90 _gcd at /home/pkgeval/.julia/packages/SymbolicUtils/N76BL/src/polyform.jl:402 unknown function (ip: 0x778004330bb6) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 rm_gcds at /home/pkgeval/.julia/packages/SymbolicUtils/N76BL/src/polyform.jl:543 unknown function (ip: 0x778004229f0a) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 simplify_div at /home/pkgeval/.julia/packages/SymbolicUtils/N76BL/src/polyform.jl:282 sdiv at /home/pkgeval/.julia/packages/SymbolicUtils/N76BL/src/polyform.jl:336 unknown function (ip: 0x778004311402) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 call_composed at ./operators.jl:1107 [inlined] #_#55 at ./operators.jl:1104 ComposedFunction at ./operators.jl:1104 unknown function (ip: 0x778004312702) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 Walk at /home/pkgeval/.julia/packages/SymbolicUtils/N76BL/src/rewriters.jl:386 unknown function (ip: 0x778004310382) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 #simplify_fractions#123 at /home/pkgeval/.julia/packages/SymbolicUtils/N76BL/src/polyform.jl:338 simplify_fractions at /home/pkgeval/.julia/packages/SymbolicUtils/N76BL/src/polyform.jl:330 unknown function (ip: 0x7780044f3232) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 #simplify#403 at /home/pkgeval/.julia/packages/SymbolicUtils/N76BL/src/simplify.jl:42 simplify at /home/pkgeval/.julia/packages/SymbolicUtils/N76BL/src/simplify.jl:16 unknown function (ip: 0x7780044d9272) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 #simplify#541 at /home/pkgeval/.julia/packages/Symbolics/lJiB2/src/Symbolics.jl:185 simplify at /home/pkgeval/.julia/packages/Symbolics/lJiB2/src/Symbolics.jl:185 unknown function (ip: 0x7780044d9212) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 _broadcast_getindex_evalf at ./broadcast.jl:701 [inlined] _broadcast_getindex at ./broadcast.jl:674 [inlined] _getindex at ./broadcast.jl:622 [inlined] getindex at ./broadcast.jl:618 [inlined] copyto_nonleaf! at ./broadcast.jl:1106 unknown function (ip: 0x7780044f8b45) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_invoke at /source/src/gf.c:4119 restart_copyto_nonleaf! at ./broadcast.jl:1097 unknown function (ip: 0x7780044f81ba) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 copyto_nonleaf! at ./broadcast.jl:1113 unknown function (ip: 0x7780044f6725) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 copy at ./broadcast.jl:943 unknown function (ip: 0x7780044ce8d3) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 materialize at ./broadcast.jl:896 [inlined] #check_composition#17 at /home/pkgeval/.julia/packages/BioChemicalTreatment/EkcEZ/src/Reactions/biochemicalreactionsystem.jl:308 check_composition at /home/pkgeval/.julia/packages/BioChemicalTreatment/EkcEZ/src/Reactions/biochemicalreactionsystem.jl:300 [inlined] macro expansion at /home/pkgeval/.julia/packages/BioChemicalTreatment/EkcEZ/src/ProcessSimulator/processes.jl:105 [inlined] #327 at /home/pkgeval/.julia/packages/ModelingToolkit/H1QXB/src/systems/abstractsystem.jl:2320 #Process#319 at /home/pkgeval/.julia/packages/ModelingToolkit/H1QXB/src/systems/abstractsystem.jl:2320 unknown function (ip: 0x778004447b84) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_invoke at /source/src/gf.c:4119 Process at /home/pkgeval/.julia/packages/ModelingToolkit/H1QXB/src/systems/abstractsystem.jl:2318 unknown function (ip: 0x77800444177d) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:772 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 include_string at ./loading.jl:2915 _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 _include at ./loading.jl:2975 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 unknown function (ip: 0x778044f5ae62) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 macro expansion at /home/pkgeval/.julia/packages/BioChemicalTreatment/EkcEZ/test/runtests.jl:21 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:1952 [inlined] macro expansion at /home/pkgeval/.julia/packages/BioChemicalTreatment/EkcEZ/test/runtests.jl:21 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:1952 [inlined] macro expansion at /home/pkgeval/.julia/packages/BioChemicalTreatment/EkcEZ/test/runtests.jl:10 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:1952 [inlined] top-level scope at /home/pkgeval/.julia/packages/BioChemicalTreatment/EkcEZ/test/runtests.jl:6 _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_invoke at /source/src/gf.c:4119 jl_toplevel_eval_flex at /source/src/toplevel.c:761 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 include_string at ./loading.jl:2915 _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 _include at ./loading.jl:2975 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_60404.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:690 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:772 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 exec_options at ./client.jl:296 _start at ./client.jl:563 jfptr__start_55122.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7780467e8249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 131595611 (Pool: 131594171; Big: 1440); GC: 60 PkgEval terminated after 2733.7s: test duration exceeded the time limit