Package evaluation of Stheno on Julia 1.13.0-DEV.1162 (f0ece4ad9a*) started at 2025-09-18T17:35:28.645 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.39s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.2 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.14.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.1 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.75s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 33.75s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_9ISYCt/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.33 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_9ISYCt/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.2 [a9b6321e] Atomix v1.1.2 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.26.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.1 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.14.0 [26cc04aa] FiniteDifferences v0.12.33 [f6369f11] ForwardDiff v1.2.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.5 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.38 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.2 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.37+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.0+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 3593.4 ms ✓ FiniteDifferences 1 dependency successfully precompiled in 4 seconds. 18 already precompiled. Precompiling packages... 1673.7 ms ✓ StructArrays → StructArraysStaticArraysExt 6870.8 ms ✓ KernelAbstractions 6761.2 ms ✓ ForwardDiff 3132.3 ms ✓ KernelAbstractions → SparseArraysExt 2964.7 ms ✓ KernelAbstractions → LinearAlgebraExt 26070.9 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 2012.3 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 19016.2 ms ✓ GPUArrays 58735.4 ms ✓ Zygote 9 dependencies successfully precompiled in 129 seconds. 97 already precompiled. Precompiling packages... 7457.5 ms ✓ KernelAbstractions → SparseArraysExt 2673.3 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 15172.3 ms ✓ GPUArrays 7217.7 ms ✓ Zygote → ZygoteDistancesExt 4 dependencies successfully precompiled in 36 seconds. 107 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#140` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 18m44.3s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1133s / 99.2% 29.0GiB / 99.5% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 719s 64.0% 719s 20.2GiB 69.9% 20.2GiB addition 1 403s 35.8% 403s 11.7GiB 40.4% 11.7GiB Standardised Tests (correlated sum) 1 223s 19.8% 223s 6.35GiB 22.0% 6.35GiB adj_ad 9 25.2s 2.2% 2.80s 1.00GiB 3.5% 114MiB adj_fd 9 9.14s 0.8% 1.02s 310MiB 1.0% 34.4MiB Standardised Tests (independent sum) 1 132s 11.8% 132s 5.00GiB 17.3% 5.00GiB adj_ad 9 25.6s 2.3% 2.85s 1.23GiB 4.2% 139MiB adj_fd 9 10.9s 1.0% 1.22s 294MiB 1.0% 32.6MiB Correlated GPs 1 45.2s 4.0% 45.2s 271MiB 0.9% 271MiB Consistency Tests 1 18.9s 1.7% 18.9s 117MiB 0.4% 117MiB Verify mean / kernel numerically 1 2.90s 0.3% 2.90s 39.3MiB 0.1% 39.3MiB Consistency Tests 1 1.63s 0.1% 1.63s 12.2MiB 0.0% 12.2MiB product 1 149s 13.3% 149s 3.91GiB 13.5% 3.91GiB multiply by function 1 85.8s 7.6% 85.8s 2.08GiB 7.2% 2.08GiB Diff Tests 1 48.8s 4.3% 48.8s 1.58GiB 5.5% 1.58GiB adj_ad 9 19.4s 1.7% 2.16s 871MiB 2.9% 96.8MiB adj_fd 9 5.42s 0.5% 602ms 112MiB 0.4% 12.4MiB Consistency Tests 1 5.55s 0.5% 5.55s 101MiB 0.3% 101MiB multiply by constant 1 63.1s 5.6% 63.1s 1.82GiB 6.3% 1.82GiB Diff Tests 1 47.7s 4.2% 47.7s 1.78GiB 6.2% 1.78GiB adj_ad 9 15.7s 1.4% 1.74s 798MiB 2.7% 88.6MiB adj_fd 9 9.59s 0.9% 1.07s 287MiB 1.0% 31.9MiB Consistency Tests 1 3.53s 0.3% 3.53s 17.3MiB 0.1% 17.3MiB GP mul errors 1 12.1ms 0.0% 12.1ms 40.5KiB 0.0% 40.5KiB compose 1 78.8s 7.0% 78.8s 2.39GiB 8.3% 2.39GiB general 1 48.6s 4.3% 48.6s 1.56GiB 5.4% 1.56GiB Diff Tests 1 43.1s 3.8% 43.1s 1.51GiB 5.2% 1.51GiB adj_ad 9 13.6s 1.2% 1.51s 735MiB 2.5% 81.7MiB adj_fd 9 5.28s 0.5% 586ms 114MiB 0.4% 12.7MiB Consistency Tests 1 4.16s 0.4% 4.16s 34.0MiB 0.1% 34.0MiB Stretch 1 24.7s 2.2% 24.7s 746MiB 2.5% 746MiB scalar stretch 1 24.0s 2.1% 24.0s 733MiB 2.5% 733MiB scalar input 1 23.2s 2.1% 23.2s 729MiB 2.5% 729MiB adj_fd 9 8.45s 0.8% 939ms 275MiB 0.9% 30.6MiB adj_ad 9 3.16s 0.3% 351ms 141MiB 0.5% 15.7MiB vector input 1 736ms 0.1% 736ms 3.18MiB 0.0% 3.18MiB Vector stretch 1 595ms 0.1% 595ms 9.74MiB 0.0% 9.74MiB Matrix stretch 1 132ms 0.0% 132ms 2.97MiB 0.0% 2.97MiB Shift 1 2.91s 0.3% 2.91s 39.2MiB 0.1% 39.2MiB Shift{Vector{Float64}} 1 1.53s 0.1% 1.53s 14.1MiB 0.0% 14.1MiB Shift{Float64} 1 1.38s 0.1% 1.38s 25.1MiB 0.1% 25.1MiB Select 1 1.55s 0.1% 1.55s 31.2MiB 0.1% 31.2MiB evaluation 1 700ms 0.1% 700ms 20.2MiB 0.1% 20.2MiB idx isa Vector 1 503ms 0.0% 503ms 7.65MiB 0.0% 7.65MiB idx isa Integer 1 347ms 0.0% 347ms 3.35MiB 0.0% 3.35MiB Periodic 1 1.10s 0.1% 1.10s 32.8MiB 0.1% 32.8MiB cross 1 30.3s 2.7% 30.3s 1.42GiB 4.9% 1.42GiB block arrays 1 16.1s 1.4% 16.1s 789MiB 2.7% 789MiB Stheno._collect ∘ _mortar 1 13.5s 1.2% 13.5s 680MiB 2.3% 680MiB BlockMatrix 1 7.04s 0.6% 7.04s 385MiB 1.3% 385MiB adj_fd 1 958ms 0.1% 958ms 131MiB 0.4% 131MiB adj_ad 1 51.3ms 0.0% 51.3ms 2.35MiB 0.0% 2.35MiB BlockVector 1 6.49s 0.6% 6.49s 295MiB 1.0% 295MiB adj_fd 1 783ms 0.1% 783ms 12.3MiB 0.0% 12.3MiB adj_ad 1 301ms 0.0% 301ms 15.8MiB 0.1% 15.8MiB fdm stuff 1 2.56s 0.2% 2.56s 109MiB 0.4% 109MiB Correctness tests 1 8.49s 0.8% 8.49s 429MiB 1.5% 429MiB Standardised Tests 1 5.72s 0.5% 5.72s 231MiB 0.8% 231MiB gp 1 190s 16.9% 190s 4.50GiB 15.6% 4.50GiB sparse gp 1 19.1s 1.7% 19.1s 392MiB 1.3% 392MiB SparseFiniteGP inference 1 14.4s 1.3% 14.4s 264MiB 0.9% 264MiB SparseFiniteGP methods 1 4.41s 0.4% 4.41s 123MiB 0.4% 123MiB SparseFiniteGP Constructors 1 276ms 0.0% 276ms 4.10MiB 0.0% 4.10MiB adj_ad 2 19.1s 1.7% 9.55s 831MiB 2.8% 416MiB gp 1 16.8s 1.5% 16.8s 362MiB 1.2% 362MiB GP 1 16.5s 1.5% 16.5s 359MiB 1.2% 359MiB independent GPs 1 252ms 0.0% 252ms 2.58MiB 0.0% 2.58MiB wrapped AbstractGP 1 8.59ms 0.0% 8.59ms 287KiB 0.0% 287KiB adj_fd 2 2.98s 0.3% 1.49s 42.3MiB 0.1% 21.2MiB derived_gp 1 149μs 0.0% 149μs 1.92KiB 0.0% 1.92KiB gaussian_process_probabilistic_programme 1 137s 12.2% 137s 2.24GiB 7.8% 2.24GiB Zygote 1 27.6s 2.5% 27.6s 0.97GiB 3.4% 0.97GiB nested gppp 1 15.3s 1.4% 15.3s 87.8MiB 0.3% 87.8MiB External Consistency 1 13.9s 1.2% 13.9s 92.1MiB 0.3% 92.1MiB split 1 638ms 0.1% 638ms 11.5MiB 0.0% 11.5MiB gppp macro 1 53.9ms 0.0% 53.9ms 568KiB 0.0% 568KiB doctests 1 72.1s 6.4% 72.1s 1.70GiB 5.9% 1.70GiB BlockData 1 6.66s 0.6% 6.66s 252MiB 0.9% 252MiB vcat(::GPPPInput...) 1 1.65s 0.1% 1.65s 93.1MiB 0.3% 93.1MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1313.58s PkgEval succeeded after 1388.63s