Package evaluation of StructuralIdentifiability on Julia 1.13.0-DEV.1141 (aecb173ae6*) started at 2025-09-16T23:51:40.848 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.91s ################################################################################ # Installation # Installing StructuralIdentifiability... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [220ca800] + StructuralIdentifiability v0.5.16 Updating `~/.julia/environments/v1.13/Manifest.toml` ⌅ [c3fe647b] + AbstractAlgebra v0.46.5 [a9b6321e] + Atomix v1.1.2 [861a8166] + Combinatorics v1.0.3 [864edb3b] + DataStructures v0.19.1 [e2ba6199] + ExprTools v0.1.10 [0b43b601] + Groebner v0.9.5 [18e54dd8] + IntegerMathUtils v0.1.3 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.1 [1914dd2f] + MacroTools v0.5.16 ⌅ [2edaba10] + Nemo v0.51.1 [bac558e1] + OrderedCollections v1.8.1 [3e851597] + ParamPunPam v0.5.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.11.0 [fb686558] + RandomExtensions v0.4.4 [220ca800] + StructuralIdentifiability v0.5.16 [a759f4b9] + TimerOutputs v0.5.29 [013be700] + UnsafeAtomics v0.3.0 [e134572f] + FLINT_jll v301.300.102+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [3a97d323] + MPFR_jll v4.2.2+0 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.73s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 225.61s ################################################################################ # Testing # Testing StructuralIdentifiability Status `/tmp/jl_Cn39X3/Project.toml` ⌅ [c3fe647b] AbstractAlgebra v0.46.5 [4c88cf16] Aqua v0.8.14 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.0.3 [864edb3b] DataStructures v0.19.1 [0b43b601] Groebner v0.9.5 [c8e1da08] IterTools v1.10.0 [1914dd2f] MacroTools v0.5.16 ⌅ [2edaba10] Nemo v0.51.1 [3e851597] ParamPunPam v0.5.3 [aea7be01] PrecompileTools v1.3.3 [27ebfcd6] Primes v0.5.7 [276daf66] SpecialFunctions v2.5.1 [220ca800] StructuralIdentifiability v0.5.16 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Cn39X3/Manifest.toml` ⌅ [c3fe647b] AbstractAlgebra v0.46.5 [4c88cf16] Aqua v0.8.14 [a9b6321e] Atomix v1.1.2 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.0.3 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.0 [adafc99b] CpuId v0.3.1 [864edb3b] DataStructures v0.19.1 [ab62b9b5] DeepDiffs v1.2.0 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [0b43b601] Groebner v0.9.5 [615f187c] IfElse v0.1.1 [18e54dd8] IntegerMathUtils v0.1.3 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 ⌅ [2edaba10] Nemo v0.51.1 [bac558e1] OrderedCollections v1.8.1 [3e851597] ParamPunPam v0.5.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.11.0 [fb686558] RandomExtensions v0.4.4 [276daf66] SpecialFunctions v2.5.1 [aedffcd0] Static v1.2.0 [220ca800] StructuralIdentifiability v0.5.16 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 [e134572f] FLINT_jll v301.300.102+0 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [3a97d323] MPFR_jll v4.2.2+0 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.0+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 10476.4 ms ✓ AbstractAlgebra → TestExt 1 dependency successfully precompiled in 11 seconds. 18 already precompiled. Resolving package versions... Updating `/tmp/jl_Cn39X3/Project.toml` ⌅ [c3fe647b] ↓ AbstractAlgebra v0.46.5 ⇒ v0.44.13 [loaded: v0.46.5] ⌅ [864edb3b] ↓ DataStructures v0.19.1 ⇒ v0.18.22 [loaded: v0.19.1] [961ee093] + ModelingToolkit v10.22.0 ⌅ [2edaba10] ↓ Nemo v0.51.1 ⇒ v0.49.5 [loaded: v0.51.1] Updating `/tmp/jl_Cn39X3/Manifest.toml` [47edcb42] + ADTypes v1.18.0 ⌅ [c3fe647b] ↓ AbstractAlgebra v0.46.5 ⇒ v0.44.13 [loaded: v0.46.5] [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.20.0 [4c555306] + ArrayLayouts v1.11.2 [e2ed5e7c] + Bijections v0.2.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.7.2 [70df07ce] + BracketingNonlinearSolve v1.4.0 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [a80b9123] + CommonMark v0.9.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] ↓ DataStructures v0.19.1 ⇒ v0.18.22 [loaded: v0.19.1] [2b5f629d] + DiffEqBase v6.190.0 [459566f4] + DiffEqCallbacks v4.9.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.7 [8d63f2c5] + DispatchDoctor v0.4.26 [31c24e10] + Distributions v0.25.120 [5b8099bc] + DomainSets v0.7.16 [7c1d4256] + DynamicPolynomials v0.6.3 [06fc5a27] + DynamicQuantities v1.10.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.13 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.3 [1a297f60] + FillArrays v1.14.0 [64ca27bc] + FindFirstFunctions v1.4.2 [6a86dc24] + FiniteDiff v2.28.1 [1fa38f19] + Format v1.3.7 ⌃ [f6369f11] + ForwardDiff v0.10.39 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.1 [34004b35] + HypergeometricFunctions v0.3.28 [3263718b] + ImplicitDiscreteSolve v1.2.0 [d25df0c9] + Inflate v0.1.5 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [82899510] + IteratorInterfaceExtensions v1.0.0 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v2.1.6 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.19.1 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.0 [d8e11817] + MLStyle v0.4.17 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [961ee093] + ModelingToolkit v10.22.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 ⌃ [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.6.4 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 ⌅ [2edaba10] ↓ Nemo v0.51.1 ⇒ v0.49.5 [loaded: v0.51.1] [be0214bd] + NonlinearSolveBase v1.15.0 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [bbf590c4] + OrdinaryDiffEqCore v1.34.0 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.6 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.34 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.37.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [9dfe8606] + SCCNonlinearSolve v1.5.0 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.119.0 [19f34311] + SciMLJacobianOperators v0.1.11 [c0aeaf25] + SciMLOperators v1.7.2 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.8.0 [699a6c99] + SimpleTraits v0.9.5 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [7792a7ef] + StrideArraysCore v0.5.8 [2efcf032] + SymbolicIndexingInterface v0.3.43 [19f23fe9] + SymbolicLimits v0.2.3 ⌃ [d1185830] + SymbolicUtils v3.31.0 [0c5d862f] + Symbolics v6.54.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [410a4b4d] + Tricks v0.1.12 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.25.0 [a7c27f48] + Unityper v0.1.6 ⌅ [e134572f] ↓ FLINT_jll v301.300.102+0 ⇒ v300.200.201+0 [loaded: v301.300.102+0] [61579ee1] + Ghostscript_jll v9.55.1+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [f50d1b31] + Rmath_jll v0.5.1+0 [9fa8497b] + Future v1.11.0 [a63ad114] + Mmap v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [4607b0f0] + SuiteSparse Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Resolving package versions... Updating `/tmp/jl_Cn39X3/Project.toml` [0c5d862f] + Symbolics v6.54.0 Manifest No packages added to or removed from `/tmp/jl_Cn39X3/Manifest.toml` Precompiling packages... 1731.6 ms ✓ CommonSubexpressions 1066.7 ms ✓ PoissonRandom 2594.0 ms ✓ SimpleTraits 3905.8 ms ✓ DispatchDoctor 1513.0 ms ✓ TruncatedStacktraces 2042.5 ms ✓ Accessors → UnitfulExt 1072.5 ms ✓ MaybeInplace 3451.5 ms ✓ StatsBase 9716.1 ms ✓ CommonMark 2388.2 ms ✓ CPUSummary 3327.5 ms ✓ SciMLOperators 1799.2 ms ✓ SymbolicIndexingInterface 1144.5 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 6594.3 ms ✓ MultivariatePolynomials 1977.6 ms ✓ ResettableStacks 1814.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1727.9 ms ✓ Accessors → StaticArraysExt 981.9 ms ✓ BitTwiddlingConvenienceFunctions 1173.0 ms ✓ CloseOpenIntervals 1338.3 ms ✓ LayoutPointers 6925.6 ms ✓ Latexify 9368.2 ms ✓ ForwardDiff 9374.1 ms ✓ Graphs 1503.7 ms ✓ DispatchDoctor → DispatchDoctorChainRulesCoreExt 936.6 ms ✓ DispatchDoctor → DispatchDoctorEnzymeCoreExt 9567.9 ms ✓ DynamicQuantities 1802.9 ms ✓ MaybeInplace → MaybeInplaceSparseArraysExt 10251.9 ms ✓ Distributions 51413.2 ms ✓ JuliaFormatter 1154.0 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1698.6 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 3929.3 ms ✓ RecursiveArrayTools 4888.5 ms ✓ DynamicPolynomials 3303.0 ms ✓ PolyesterWeave 3226.8 ms ✓ StrideArraysCore 2668.8 ms ✓ Latexify → SparseArraysExt 4541.3 ms ✓ Unitful → LatexifyExt 4015.5 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 3288.9 ms ✓ FastPower → FastPowerForwardDiffExt 2263.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 4367.1 ms ✓ Unitful → ForwardDiffExt 2431.8 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 2083.5 ms ✓ DynamicQuantities → DynamicQuantitiesLinearAlgebraExt 4147.7 ms ✓ DynamicQuantities → DynamicQuantitiesUnitfulExt 5116.0 ms ✓ Distributions → DistributionsTestExt 5702.8 ms ✓ Distributions → DistributionsChainRulesCoreExt 1922.4 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 11782.8 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 28738.8 ms ✓ SciMLBase 91077.8 ms ✓ SymbolicUtils 2272.9 ms ✓ Polyester 9494.1 ms ✓ NLSolversBase 3258.3 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 5997.0 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 31045.7 ms ✓ SciMLBase → SciMLBaseDistributionsExt 4575.1 ms ✓ SciMLBase → SciMLBaseMLStyleExt 8014.8 ms ✓ SciMLJacobianOperators 3314.1 ms ✓ SCCNonlinearSolve 9088.9 ms ✓ SymbolicLimits 2818.3 ms ✓ FastBroadcast 6879.4 ms ✓ LineSearches 10272.1 ms ✓ LineSearch 19655.2 ms ✓ NonlinearSolveBase 170206.0 ms ✓ Symbolics 2972.8 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 10752.7 ms ✓ Optim 3859.6 ms ✓ LineSearch → LineSearchLineSearchesExt 4097.0 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 4800.0 ms ✓ NonlinearSolveBase → NonlinearSolveBaseChainRulesCoreExt 3332.5 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 6346.5 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 8752.3 ms ✓ BracketingNonlinearSolve 14184.6 ms ✓ Symbolics → SymbolicsForwardDiffExt 11228.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt 7114.4 ms ✓ DiffEqBase 5168.6 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 16367.8 ms ✓ Symbolics → SymbolicsPreallocationToolsExt 3899.5 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 4691.4 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 3841.4 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 5436.7 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 9211.3 ms ✓ OrdinaryDiffEqCore 12820.8 ms ✓ DiffEqCallbacks 3800.0 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 31213.2 ms ✓ SimpleNonlinearSolve 118093.3 ms ✓ DiffEqNoiseProcess 14401.1 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 19648.7 ms ✓ JumpProcesses 93563.5 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 75739.2 ms ✓ ImplicitDiscreteSolve Info Given ModelingToolkit was explicitly requested, output will be shown live  ┌ Warning: `enqueue!(q::Queue, x)` is deprecated, use `Base.push!(q, x)` instead. │ caller = topsort_equations(eqs::Vector{Symbolics.Equation}, unknowns::Vector{SymbolicUtils.BasicSymbolic}; check::Bool) at alias_elimination.jl:429 └ @ Core ~/.julia/packages/ModelingToolkit/H1QXB/src/systems/alias_elimination.jl:429 ┌ Warning: `dequeue!(q::Queue)` is deprecated, use `Base.popfirst!(q)` instead. │ caller = topsort_equations(eqs::Vector{Symbolics.Equation}, unknowns::Vector{SymbolicUtils.BasicSymbolic}; check::Bool) at alias_elimination.jl:436 └ @ Core ~/.julia/packages/ModelingToolkit/H1QXB/src/systems/alias_elimination.jl:436 599296.5 ms ✓ ModelingToolkit 91 dependencies successfully precompiled in 1730 seconds. 180 already precompiled. 2 dependencies had output during precompilation: ┌ ModelingToolkit │ [Output was shown above] └ ┌ Graphs │ WARNING: importing deprecated binding DataStructures.IntDisjointSets into Graphs. │ , use IntDisjointSet instead. └ Precompiling packages... 3726.0 ms ✓ DataStructures 19759.4 ms ✓ AbstractAlgebra 1239.2 ms ✓ FLINT_jll 5194.0 ms ✓ AbstractAlgebra → TestExt ✗ Nemo 9824.7 ms ✓ Groebner → GroebnerDynamicPolynomialsExt 5 dependencies successfully precompiled in 72 seconds. 39 already precompiled. 4 dependencies precompiled but different versions are currently loaded. Restart julia to access the new versions. Otherwise, loading dependents of these packages may trigger further precompilation to work with the unexpected versions. ┌ Error: Error during loading of extension GroebnerDynamicPolynomialsExt of Groebner, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 direct dependency failed to precompile: │ │ Nemo │ │ Failed to precompile Nemo [2edaba10-b0f1-5616-af89-8c11ac63239a] to "/home/pkgeval/.julia/compiled/v1.13/Nemo/jl_X2kE0a" (ProcessExited(1)). │ ERROR: LoadError: cannot declare Nemo.PosInf constant; it was already declared as an import │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [3] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Nemo.jl:440 │ [4] include(mod::Module, _path::String) │ @ Base ./Base.jl:308 │ [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3069 │ [6] top-level scope │ @ stdin:5 │ [7] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:2915 │ [9] include_string │ @ ./loading.jl:2925 [inlined] │ [10] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:328 │ [11] _start() │ @ Base ./client.jl:563 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Nemo.jl:1 │ in expression starting at stdin: └ @ Base loading.jl:1588 Precompiling packages... ✗ Nemo Info Given SymbolicsNemoExt was explicitly requested, output will be shown live  [ Info: Assuming ((1//128)*(√((5120//1)*(a^4)) - (80//1)*(a^2))) != 0 [ Info: Assuming ((1//128)*(√((5120//1)*(a^4)) - (80//1)*(a^2))) != 0 107137.6 ms ✓ Symbolics → SymbolicsNemoExt 1 dependency successfully precompiled in 140 seconds. 158 already precompiled. 1 dependency had output during precompilation: ┌ Symbolics → SymbolicsNemoExt │ [Output was shown above] └ ┌ Error: Error during loading of extension SymbolicsNemoExt of Symbolics, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 direct dependency failed to precompile: │ │ Nemo │ │ Failed to precompile Nemo [2edaba10-b0f1-5616-af89-8c11ac63239a] to "/home/pkgeval/.julia/compiled/v1.13/Nemo/jl_7mDUSt" (ProcessExited(1)). │ ERROR: LoadError: cannot declare Nemo.PosInf constant; it was already declared as an import │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [3] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Nemo.jl:440 │ [4] include(mod::Module, _path::String) │ @ Base ./Base.jl:308 │ [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3069 │ [6] top-level scope │ @ stdin:5 │ [7] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:2915 │ [9] include_string │ @ ./loading.jl:2925 [inlined] │ [10] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:328 │ [11] _start() │ @ Base ./client.jl:563 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Nemo.jl:1 │ in expression starting at stdin: └ @ Base loading.jl:1588 Precompiling packages... ✗ Nemo 22088.2 ms ✓ Symbolics → SymbolicsGroebnerExt 1 dependency successfully precompiled in 56 seconds. 163 already precompiled. ┌ Error: Error during loading of extension SymbolicsGroebnerExt of Symbolics, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 direct dependency failed to precompile: │ │ Nemo │ │ Failed to precompile Nemo [2edaba10-b0f1-5616-af89-8c11ac63239a] to "/home/pkgeval/.julia/compiled/v1.13/Nemo/jl_R3OyDV" (ProcessExited(1)). │ ERROR: LoadError: cannot declare Nemo.PosInf constant; it was already declared as an import │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [3] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Nemo.jl:440 │ [4] include(mod::Module, _path::String) │ @ Base ./Base.jl:308 │ [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3069 │ [6] top-level scope │ @ stdin:5 │ [7] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:2915 │ [9] include_string │ @ ./loading.jl:2925 [inlined] │ [10] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:328 │ [11] _start() │ @ Base ./client.jl:563 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Nemo.jl:1 │ in expression starting at stdin: └ @ Base loading.jl:1588 Precompiling packages... 54450.7 ms ✓ ModelingToolkit → MTKDeepDiffsExt 1 dependency successfully precompiled in 57 seconds. 272 already precompiled. Precompiling packages... ✗ Nemo 66520.3 ms ✓ StructuralIdentifiability → ModelingToolkitSIExt 1 dependency successfully precompiled in 103 seconds. 288 already precompiled. ┌ Error: Error during loading of extension ModelingToolkitSIExt of StructuralIdentifiability, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 direct dependency failed to precompile: │ │ Nemo │ │ Failed to precompile Nemo [2edaba10-b0f1-5616-af89-8c11ac63239a] to "/home/pkgeval/.julia/compiled/v1.13/Nemo/jl_KQqvSv" (ProcessExited(1)). │ ERROR: LoadError: cannot declare Nemo.PosInf constant; it was already declared as an import │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [3] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Nemo.jl:440 │ [4] include(mod::Module, _path::String) │ @ Base ./Base.jl:308 │ [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3069 │ [6] top-level scope │ @ stdin:5 │ [7] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:2915 │ [9] include_string │ @ ./loading.jl:2925 [inlined] │ [10] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:328 │ [11] _start() │ @ Base ./client.jl:563 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Nemo.jl:1 │ in expression starting at stdin: └ @ Base loading.jl:1588 [ Info: Testing started [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 43 running 1 of 1 signal (10): User defined signal 1 egal_types at /source/src/builtins.c:182 ijl_types_equal at /source/src/subtype.c:2325 jl_specializations_get_linfo_ at /source/src/gf.c:236 #specialize_method#8 at ./runtime_internals.jl:1782 [inlined] specialize_method at ./runtime_internals.jl:1769 [inlined] typeinf_edge at ./../usr/share/julia/Compiler/src/typeinfer.jl:1036 abstract_call_method at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:735 infercalls at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:167 abstract_call_gf_by_type at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:338 abstract_call_known at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2796 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2903 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2896 [inlined] abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3056 abstract_eval_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3074 [inlined] abstract_eval_statement_expr at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3430 abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3857 [inlined] abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3814 [inlined] typeinf_local at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4363 jfptr_typeinf_local_87333.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4521 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1387 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1570 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1579 jfptr_typeinf_ext_toplevel_83114.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] jl_type_infer at /source/src/gf.c:463 jl_compile_method_internal at /source/src/gf.c:3632 _jl_invoke at /source/src/gf.c:4104 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:772 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 include_string at ./loading.jl:2915 _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 _include at ./loading.jl:2975 include at ./Base.jl:309 IncludeInto at ./Base.jl:310 unknown function (ip: 0x70dd24ed85b2) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 macro expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/runtests.jl:162 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:1952 [inlined] macro expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/runtests.jl:160 [inlined] macro expansion at ./timing.jl:645 [inlined] top-level scope at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/runtests.jl:159 _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_invoke at /source/src/gf.c:4119 jl_toplevel_eval_flex at /source/src/toplevel.c:761 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 include_string at ./loading.jl:2915 _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 _include at ./loading.jl:2975 include at ./Base.jl:309 IncludeInto at ./Base.jl:310 jfptr_IncludeInto_48516.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:690 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:772 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 exec_options at ./client.jl:296 _start at ./client.jl:563 jfptr__start_39276.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x70dd67b71249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_61470.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000758127d5e950 Total snapshots: 426. Utilization: 0% ╎426 @Base/task.jl:1137 wait_forever() 425╎ 426 @Base/task.jl:1200 wait() ┌ Warning: New variable c, treating as a scalar parameter └ @ StructuralIdentifiability ~/.julia/packages/StructuralIdentifiability/0tPYp/src/pb_representation.jl:94 [ Info: Summary of the model: [43] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/common_ring.jl:1 PkgEval terminated after 2761.51s: test duration exceeded the time limit