Package evaluation of GIRFReco on Julia 1.13.0-DEV.1141 (aecb173ae6*) started at 2025-09-17T17:27:10.350 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.76s ################################################################################ # Installation # Installing GIRFReco... Resolving package versions... Installed HDF5 ─ v0.16.16 Updating `~/.julia/environments/v1.13/Project.toml` [cf1bd817] + GIRFReco v0.1.7 Updating `~/.julia/environments/v1.13/Manifest.toml` [14f7f29c] + AMD v0.5.3 [a4c015fc] + ANSIColoredPrinters v0.0.1 [621f4979] + AbstractFFTs v1.5.0 [7f219486] + AbstractNFFTs v0.8.2 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.20.0 [a9b6321e] + Atomix v1.1.2 ⌃ [13072b0f] + AxisAlgorithms v1.0.1 [39de3d68] + AxisArrays v0.4.8 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [26cce99e] + BasicInterpolators v0.7.1 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.7 [00ebfdb7] + CSTParser v3.4.3 [aafaddc9] + CatIndices v0.2.2 [082447d4] + ChainRules v1.72.5 [d360d2e6] + ChainRulesCore v1.26.0 [0b6fb165] + ChunkCodecCore v1.0.0 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [aaaa29a8] + Clustering v0.15.8 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.31.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌅ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 ⌅ [a80b9123] + CommonMark v0.8.16 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.0 [a33af91c] + CompositionsBase v0.1.2 [ed09eef8] + ComputationalResources v0.3.2 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [6add18c4] + ContextVariablesX v0.1.3 [d38c429a] + Contour v0.6.3 [150eb455] + CoordinateTransformations v0.6.4 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [dc8bdbbb] + CustomUnitRanges v1.0.2 ⌅ [717857b8] + DSP v0.7.10 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [39dd38d3] + Dierckx v0.5.4 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 ⌅ [e30172f5] + Documenter v0.27.25 [460bff9d] + ExceptionUnwrapping v0.1.11 [e2ba6199] + ExprTools v0.1.10 [c87230d0] + FFMPEG v0.4.4 [4f61f5a4] + FFTViews v0.3.2 [7a1cc6ca] + FFTW v1.10.0 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [9aa1b823] + FastClosures v0.3.2 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.14.0 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [587475ba] + Flux v0.14.25 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.2.1 [b18b359b] + FourierTools v0.4.9 ⌅ [d9f16b24] + Functors v0.4.12 [cf1bd817] + GIRFReco v0.1.7 ⌃ [0c68f7d7] + GPUArrays v11.2.3 [46192b85] + GPUArraysCore v0.2.0 [28b8d3ca] + GR v0.73.17 [c27321d9] + Glob v1.3.1 [a2bd30eb] + Graphics v1.1.3 [86223c79] + Graphs v1.13.1 [42e2da0e] + Grisu v1.0.2 ⌅ [f67ccb44] + HDF5 v0.16.16 [cd3eb016] + HTTP v1.10.17 [076d061b] + HashArrayMappedTries v0.2.0 [2c695a8d] + HistogramThresholding v0.3.1 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.28 [b5f81e59] + IOCapture v0.2.5 [7869d1d1] + IRTools v0.4.15 [615f187c] + IfElse v0.1.1 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [cbc4b850] + ImageBinarization v0.3.1 [f332f351] + ImageContrastAdjustment v0.3.12 [a09fc81d] + ImageCore v0.10.5 [89d5987c] + ImageCorners v0.1.3 [51556ac3] + ImageDistances v0.2.17 [6a3955dd] + ImageFiltering v0.7.12 ⌅ [9ee76f2b] + ImageGeoms v0.10.1 [82e4d734] + ImageIO v0.6.9 [6218d12a] + ImageMagick v1.4.2 [bc367c6b] + ImageMetadata v0.9.10 [787d08f9] + ImageMorphology v0.4.6 [2996bd0c] + ImageQualityIndexes v0.3.7 [80713f31] + ImageSegmentation v1.9.0 [4e3cecfd] + ImageShow v0.3.8 [02fcd773] + ImageTransformations v0.10.2 [8ad4436d] + ImageUtils v0.2.12 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StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.67.0+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building HDF5 → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/114e20044677badbc631ee6fdc80a67920561a29/build.log` Installation completed after 19.43s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 1947.01s ################################################################################ # Testing # Testing GIRFReco Status `/tmp/jl_W1nKBg/Project.toml` [cf1bd817] GIRFReco v0.1.7 [8ad4436d] ImageUtils v0.2.12 [033835bb] JLD2 v0.6.2 ⌅ [5a6f062f] MRIFiles v0.1.6 ⌅ [bdf86e05] MRIReco v0.7.1 [9be66c26] MRISampling v0.1.2 ⌃ [8988da37] MRISimulation v0.1.1 [6c6a2e73] Scratch v1.3.0 [10745b16] Statistics v1.11.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_W1nKBg/Manifest.toml` [14f7f29c] AMD v0.5.3 [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [7f219486] AbstractNFFTs v0.8.2 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.20.0 [a9b6321e] Atomix v1.1.2 ⌃ [13072b0f] AxisAlgorithms v1.0.1 [39de3d68] AxisArrays v0.4.8 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [26cce99e] BasicInterpolators v0.7.1 [d1d4a3ce] 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v0.4.2+0 [35661453] Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [35ca27e7] eudev_jll v3.2.14+0 [214eeab7] fzf_jll v0.61.1+0 [477f73a3] libaec_jll v1.1.4+0 [a4ae2306] libaom_jll v3.12.1+0 [0ac62f75] libass_jll v0.17.4+0 [1183f4f0] libdecor_jll v0.2.2+0 [2db6ffa8] libevdev_jll v1.13.4+0 [f638f0a6] libfdk_aac_jll v2.0.4+0 [36db933b] libinput_jll v1.28.1+0 [b53b4c65] libpng_jll v1.6.50+0 [075b6546] libsixel_jll v1.10.5+0 [f27f6e37] libvorbis_jll v1.3.8+0 [c5f90fcd] libwebp_jll v1.6.0+0 [337d8026] libzip_jll v1.11.3+0 [009596ad] mtdev_jll v1.1.7+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [1270edf5] x264_jll v10164.0.1+0 [dfaa095f] x265_jll v4.1.0+0 [d8fb68d0] xkbcommon_jll v1.9.2+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.0+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 4150.7 ms ? UnitfulLatexify 25921.3 ms ✓ MRIGradients 21823.3 ms ? Plots → UnitfulExt Info Given GIRFReco was explicitly requested, output will be shown live  WARNING: Method definition apply_recipe(Unitful.Unit{U, D} where D where U) in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 77346.8 ms ? GIRFReco 1 dependency successfully precompiled in 153 seconds. 512 already precompiled. 3 dependencies failed but may be precompilable after restarting julia 3 dependencies had output during precompilation: ┌ UnitfulLatexify │ WARNING: Method definition apply_recipe(Unitful.Unit{U, D} where D where U) in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ Plots → UnitfulExt │ WARNING: Method definition apply_recipe(Unitful.Unit{U, D} where D where U) in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ GIRFReco │ [Output was shown above] └ WARNING: Method definition apply_recipe(Unitful.Unit{U, D} where D where U) in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling packages... 6788.7 ms ? UnitfulLatexify Info Given UnitfulExt was explicitly requested, output will be shown live  WARNING: Method definition apply_recipe(Unitful.Unit{U, D} where D where U) in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 19223.8 ms ? Plots → UnitfulExt WARNING: Method definition apply_recipe(Unitful.Unit{U, D} where D where U) in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling packages... Info Given UnitfulLatexify was explicitly requested, output will be shown live  WARNING: Method definition apply_recipe(Unitful.Unit{U, D} where D where U) in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 3113.8 ms ? UnitfulLatexify WARNING: Method definition apply_recipe(Unitful.Unit{U, D} where D where U) in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: Method definition apply_recipe(Unitful.Unit{U, D} where D where U) in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Latexify.apply_recipe), Unitful.Unit{U, D} where D where U) in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). WARNING: Method definition _getoperation(Unitful.Unit{U, D} where D where U) in module LatexifyExt overwritten in module UnitfulLatexify. WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Latexify._getoperation), Unitful.Unit{U, D} where D where U) in module LatexifyExt overwritten in module UnitfulLatexify. WARNING: Method definition apply_recipe(Unitful.Units{N, D, A} where A where D where N) in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Latexify.apply_recipe), Unitful.Units{N, D, A} where A where D where N) in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). WARNING: Method definition _getoperation(Unitful.Units{N, D, A} where A where D where N) in module LatexifyExt overwritten in module UnitfulLatexify. WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Latexify._getoperation), Unitful.Units{N, D, A} where A where D where N) in module LatexifyExt overwritten in module UnitfulLatexify. WARNING: Method definition apply_recipe(Unitful.AbstractQuantity{T, D, U} where U where D where T) in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Latexify.apply_recipe), Unitful.AbstractQuantity{T, D, U} where U where D where T) in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). WARNING: Method definition _getoperation(Unitful.AbstractQuantity{T, D, U} where U where D where T) in module LatexifyExt overwritten in module UnitfulLatexify. WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Latexify._getoperation), Unitful.AbstractQuantity{T, D, U} where U where D where T) in module LatexifyExt overwritten in module UnitfulLatexify. WARNING: Method definition apply_recipe(AbstractArray{var"#s26", N} where N where var"#s26"<:Unitful.AbstractQuantity{N, D, U}) where {N<:Number, D, U} in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Latexify.apply_recipe), AbstractArray{var"#s25", N} where N where var"#s25"<:Unitful.AbstractQuantity{N, D, U}) where {N<:Number, D, U} in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). WARNING: Method definition _getoperation(AbstractArray{var"#s21", N} where N where var"#s21"<:Unitful.AbstractQuantity{N, D, U}) where {N<:Number, D, U} in module LatexifyExt overwritten in module UnitfulLatexify. WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Latexify._getoperation), AbstractArray{var"#s20", N} where N where var"#s20"<:Unitful.AbstractQuantity{N, D, U}) where {N<:Number, D, U} in module LatexifyExt overwritten in module UnitfulLatexify. WARNING: Method definition apply_recipe(Tuple{T, Vararg{T}}) where {N<:Number, D, U, T<:Unitful.AbstractQuantity{N, D, U}} in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Latexify.apply_recipe), Tuple{T, Vararg{T}}) where {N<:Number, D, U, T<:Unitful.AbstractQuantity{N, D, U}} in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). WARNING: Method definition _getoperation(Tuple{T, Vararg{T}}) where {N<:Number, D, U, T<:Unitful.AbstractQuantity{N, D, U}} in module LatexifyExt overwritten in module UnitfulLatexify. WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Latexify._getoperation), Tuple{T, Vararg{T}}) where {N<:Number, D, U, T<:Unitful.AbstractQuantity{N, D, U}} in module LatexifyExt overwritten in module UnitfulLatexify. WARNING: Method definition apply_recipe(Unitful.Units{N, D, A} where A<:(Unitful.Affine{T} where T) where D where N) in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Latexify.apply_recipe), Unitful.Units{N, D, A} where A<:(Unitful.Affine{T} where T) where D where N) in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). WARNING: Method definition _getoperation(Unitful.Units{N, D, A} where A<:(Unitful.Affine{T} where T) where D where N) in module LatexifyExt overwritten in module UnitfulLatexify. WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Latexify._getoperation), Unitful.Units{N, D, A} where A<:(Unitful.Affine{T} where T) where D where N) in module LatexifyExt overwritten in module UnitfulLatexify. WARNING: Method definition apply_recipe(Unitful.AbstractQuantity{T, D, U} where U<:(Unitful.Units{N, D, A} where A<:(Unitful.Affine{T} where T) where D where N) where D where T) in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Latexify.apply_recipe), Unitful.AbstractQuantity{T, D, U} where U<:(Unitful.Units{N, D, A} where A<:(Unitful.Affine{T} where T) where D where N) where D where T) in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). WARNING: Method definition _getoperation(Unitful.AbstractQuantity{T, D, U} where U<:(Unitful.Units{N, D, A} where A<:(Unitful.Affine{T} where T) where D where N) where D where T) in module LatexifyExt overwritten in module UnitfulLatexify. WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Latexify._getoperation), Unitful.AbstractQuantity{T, D, U} where U<:(Unitful.Units{N, D, A} where A<:(Unitful.Affine{T} where T) where D where N) where D where T) in module LatexifyExt overwritten in module UnitfulLatexify. WARNING: Method definition apply_recipe(AbstractString, Unitful.Units{N, D, A} where A where D where N) in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Latexify.apply_recipe), AbstractString, Unitful.Units{N, D, A} where A where D where N) in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). WARNING: Method definition _getoperation(AbstractString, Unitful.Units{N, D, A} where A where D where N) in module LatexifyExt overwritten in module UnitfulLatexify. WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Latexify._getoperation), AbstractString, Unitful.Units{N, D, A} where A where D where N) in module LatexifyExt overwritten in module UnitfulLatexify. Precompiling packages... 3215.4 ms ? UnitfulLatexify 18047.7 ms ✓ Plots → FileIOExt 15501.2 ms ? Plots → UnitfulExt 1 dependency successfully precompiled in 39 seconds. 179 already precompiled. 2 dependencies precompiled but different versions are currently loaded. Restart julia to access the new versions. Otherwise, loading dependents of these packages may trigger further precompilation to work with the unexpected versions. 2 dependencies failed but may be precompilable after restarting julia 2 dependencies had output during precompilation: ┌ UnitfulLatexify │ WARNING: Method definition apply_recipe(Unitful.Unit{U, D} where D where U) in module LatexifyExt at /home/pkgeval/.julia/packages/Latexify/IJYMW/src/recipes.jl:168 overwritten in module UnitfulLatexify on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ Plots → UnitfulExt │ ┌ Warning: Module UnitfulLatexify with build ID ffffffff-ffff-ffff-5f66-c8c8ae8badd1 is missing from the cache. │ │ This may mean UnitfulLatexify [45397f5d-5981-4c77-b2b3-fc36d6e9b728] does not support precompilation but is imported by a module that does. │ └ @ Base loading.jl:2660 └ Precompiling packages... 15397.1 ms ✓ MRICoilSensitivities 1 dependency successfully precompiled in 16 seconds. 83 already precompiled. Precompiling packages... 2439.4 ms ✓ Transducers → TransducersAdaptExt 19119.5 ms ✓ RegularizedLeastSquares 2 dependencies successfully precompiled in 23 seconds. 92 already precompiled. Precompiling packages... 2785.1 ms ✓ MLCore 10501.2 ms ✓ ChainRules 1506.9 ms ✓ BangBang → BangBangStructArraysExt 2325.6 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 5963.5 ms ✓ ForwardDiff 2940.2 ms ✓ NNlib → NNlibSpecialFunctionsExt 16977.7 ms ✓ OneHotArrays 12865.5 ms ✓ GPUArrays 18837.6 ms ✓ MLUtils 2122.2 ms ✓ MLDataDevices → MLDataDevicesChainRulesExt 2021.3 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 3284.5 ms ✓ NNlib → NNlibForwardDiffExt 2610.2 ms ✓ MLDataDevices → MLDataDevicesOneHotArraysExt 5525.1 ms ✓ MLDataDevices → MLDataDevicesGPUArraysExt 5626.8 ms ✓ MLDataDevices → MLDataDevicesMLUtilsExt 51153.6 ms ✓ Zygote 4921.2 ms ✓ MLDataDevices → MLDataDevicesZygoteExt 25980.5 ms ✓ Flux 18 dependencies successfully precompiled in 181 seconds. 151 already precompiled. Precompiling packages... 2824.6 ms ✓ NNlib → NNlibFFTWExt 1 dependency successfully precompiled in 3 seconds. 60 already precompiled. Precompiling packages... 1883.1 ms ✓ ArrayInterface → ArrayInterfaceChainRulesExt 1 dependency successfully precompiled in 2 seconds. 40 already precompiled. Precompiling packages... 2477.0 ms ✓ Unitful → ForwardDiffExt 5165.7 ms ✓ LoopVectorization → ForwardDiffExt 2 dependencies successfully precompiled in 9 seconds. 59 already precompiled. Precompiling packages... 1630.2 ms ✓ Roots → RootsForwardDiffExt 1 dependency successfully precompiled in 2 seconds. 30 already precompiled. Precompiling packages... 6481.3 ms ✓ Zygote → ZygoteDistancesExt 1 dependency successfully precompiled in 8 seconds. 110 already precompiled. Precompiling packages... 5652.7 ms ✓ Zygote → ZygoteColorsExt 1 dependency successfully precompiled in 7 seconds. 109 already precompiled. ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 597 running 1 of 1 signal (10): User defined signal 1 gc_sweep_page at /source/src/gc-stock.c:917 gc_sweep_pool_page at /source/src/gc-stock.c:987 [inlined] gc_sweep_pool_parallel at /source/src/gc-stock.c:1279 gc_sweep_pool at /source/src/gc-stock.c:1399 [inlined] _jl_gc_collect at /source/src/gc-stock.c:3196 ijl_gc_collect at /source/src/gc-stock.c:3489 maybe_collect at /source/src/gc-stock.c:349 [inlined] jl_gc_small_alloc_inner at /source/src/gc-stock.c:725 jl_gc_small_alloc_noinline at /source/src/gc-stock.c:783 [inlined] jl_gc_alloc_ at /source/src/gc-stock.c:797 jl_string_to_genericmemory at /source/src/genericmemory.c:110 unsafe_wrap at ./strings/string.jl:144 [inlined] StringMemory at ./iobuffer.jl:167 [inlined] _similar_data at ./iobuffer.jl:296 [inlined] _resize! at ./iobuffer.jl:544 ensureroom_slowpath at ./iobuffer.jl:653 ensureroom at ./iobuffer.jl:610 [inlined] unsafe_write at ./iobuffer.jl:896 write at ./strings/io.jl:242 [inlined] _replace_finish at ./strings/util.jl:1047 _replace_ at ./strings/util.jl:1075 #replace#439 at ./strings/util.jl:1131 [inlined] replace at ./strings/util.jl:1131 [inlined] restore_depot_path at ./loading.jl:3446 [inlined] parse_cache_header at ./loading.jl:3600 #stale_cachefile#923 at ./loading.jl:4030 stale_cachefile at ./loading.jl:4012 [inlined] #stale_cachefile#922 at ./loading.jl:4010 [inlined] stale_cachefile at ./loading.jl:4009 [inlined] #compilecache_path#887 at ./loading.jl:1840 compilecache_path at ./loading.jl:1830 [inlined] #isprecompiled#896 at ./loading.jl:1895 [inlined] isprecompiled at ./loading.jl:1888 [inlined] #_precompilepkgs##32 at ./precompilation.jl:991 jfptr_YY._precompilepkgsYY.YY.32_18321.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== Precompiling ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_61470.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007805059604c0 Total snapshots: 486. Utilization: 0% ╎486 @Base/task.jl:1137 wait_forever() 485╎ 486 @Base/task.jl:1200 wait() packages... [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_61470.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 36234219 (Pool: 36233514; Big: 705); GC: 29 [597] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/GIRFReco/7Na3s/src/GIRFReco.jl:26 obviously_egal at /source/src/subtype.c:434 obviously_in_union at /source/src/subtype.c:538 obviously_in_union at /source/src/subtype.c:534 obviously_in_union at /source/src/subtype.c:534 subtype at /source/src/subtype.c:1418 exists_subtype at /source/src/subtype.c:1793 [inlined] forall_exists_subtype at /source/src/subtype.c:1822 ijl_types_equal at /source/src/subtype.c:2374 [inlined] ijl_types_equal at /source/src/subtype.c:2321 typekey_eq at /source/src/jltypes.c:974 lookup_type_idx_linear at /source/src/jltypes.c:1096 [inlined] lookup_type at /source/src/jltypes.c:1135 inst_datatype_inner at /source/src/jltypes.c:2306 inst_type_w_ at /source/src/jltypes.c:2751 ijl_instantiate_unionall at /source/src/jltypes.c:1542 ijl_apply_type at /source/src/jltypes.c:1476 widenconst at ./../usr/share/julia/Compiler/src/typelattice.jl:703 [inlined] is_mutation_free_argtype at ./../usr/share/julia/Compiler/src/typeutils.jl:346 [inlined] abstract_eval_partition_load at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3664 [inlined] scan_specified_partitions at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3705 scan_leaf_partitions at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3728 [inlined] abstract_eval_globalref at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3751 [inlined] abstract_eval_getglobal at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2391 abstract_eval_getglobal at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2419 abstract_call_known at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2663 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2903 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2896 [inlined] abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3056 abstract_eval_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3074 [inlined] abstract_eval_statement_expr at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3430 abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3857 [inlined] abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3814 [inlined] typeinf_local at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4363 jfptr_typeinf_local_87333.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4521 const_prop_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:1348 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:898 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:868 [inlined] handle1 at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:178 infercalls at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:252 abstract_call_gf_by_type at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:338 abstract_call_known at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2796 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2903 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2896 [inlined] abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3056 abstract_eval_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3074 [inlined] abstract_eval_statement_expr at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3430 abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3857 [inlined] abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3814 [inlined] typeinf_local at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4363 jfptr_typeinf_local_87333.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4521 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1387 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1570 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1579 jfptr_typeinf_ext_toplevel_83114.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] jl_type_infer at /source/src/gf.c:463 jl_compile_method_internal at /source/src/gf.c:3632 _jl_invoke at /source/src/gf.c:4104 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:902 #invokelatest_gr#234 at ./reflection.jl:0 [inlined] invokelatest_gr at ./reflection.jl:1327 [inlined] #handle_message_nothrow#2 at ./logging/logging.jl:432 handle_message_nothrow at ./logging/logging.jl:429 macro expansion at ./logging/logging.jl:417 [inlined] #warning_empty#40 at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 [inlined] warning_empty at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1360 [inlined] #print#5 at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:358 print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 [inlined] print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 [inlined] print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 _peek_report at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:94 unknown function (ip: 0x7171acb2389f) at (unknown file) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] jl_f_invokelatest at /source/src/builtins.c:883 profile_printing_listener at ./Base.jl:336 #start_profile_listener##0 at ./Base.jl:354 jfptr_YY.start_profile_listenerYY.YY.0_14795.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4112 [inlined] ijl_apply_generic at /source/src/gf.c:4309 jl_apply at /source/src/julia.h:2266 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 109663839 (Pool: 109662178; Big: 1661); GC: 183 PkgEval terminated after 2725.57s: test duration exceeded the time limit