Package evaluation of StructuralIdentifiability on Julia 1.13.0-DEV.1125 (fd1c6fd302*) started at 2025-09-16T00:04:20.659 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.72s ################################################################################ # Installation # Installing StructuralIdentifiability... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [220ca800] + StructuralIdentifiability v0.5.16 Updating `~/.julia/environments/v1.13/Manifest.toml` ⌅ [c3fe647b] + AbstractAlgebra v0.46.5 [a9b6321e] + Atomix v1.1.2 [861a8166] + Combinatorics v1.0.3 [864edb3b] + DataStructures v0.19.1 [e2ba6199] + ExprTools v0.1.10 [0b43b601] + Groebner v0.9.5 [18e54dd8] + IntegerMathUtils v0.1.3 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.1 [1914dd2f] + MacroTools v0.5.16 ⌅ [2edaba10] + Nemo v0.51.1 [bac558e1] + OrderedCollections v1.8.1 [3e851597] + ParamPunPam v0.5.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.11.0 [fb686558] + RandomExtensions v0.4.4 [220ca800] + StructuralIdentifiability v0.5.16 [a759f4b9] + TimerOutputs v0.5.29 [013be700] + UnsafeAtomics v0.3.0 [e134572f] + FLINT_jll v301.300.102+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [3a97d323] + MPFR_jll v4.2.2+0 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.8s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 209.13s ################################################################################ # Testing # Testing StructuralIdentifiability Status `/tmp/jl_UiSlVi/Project.toml` ⌅ [c3fe647b] AbstractAlgebra v0.46.5 [4c88cf16] Aqua v0.8.14 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.0.3 [864edb3b] DataStructures v0.19.1 [0b43b601] Groebner v0.9.5 [c8e1da08] IterTools v1.10.0 [1914dd2f] MacroTools v0.5.16 ⌅ [2edaba10] Nemo v0.51.1 [3e851597] ParamPunPam v0.5.3 [aea7be01] PrecompileTools v1.3.3 [27ebfcd6] Primes v0.5.7 [276daf66] SpecialFunctions v2.5.1 [220ca800] StructuralIdentifiability v0.5.16 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_UiSlVi/Manifest.toml` ⌅ [c3fe647b] AbstractAlgebra v0.46.5 [4c88cf16] Aqua v0.8.14 [a9b6321e] Atomix v1.1.2 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.0.3 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.0 [adafc99b] CpuId v0.3.1 [864edb3b] DataStructures v0.19.1 [ab62b9b5] DeepDiffs v1.2.0 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [0b43b601] Groebner v0.9.5 [615f187c] IfElse v0.1.1 [18e54dd8] IntegerMathUtils v0.1.3 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 ⌅ [2edaba10] Nemo v0.51.1 [bac558e1] OrderedCollections v1.8.1 [3e851597] ParamPunPam v0.5.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.11.0 [fb686558] RandomExtensions v0.4.4 [276daf66] SpecialFunctions v2.5.1 [aedffcd0] Static v1.2.0 [220ca800] StructuralIdentifiability v0.5.16 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 [e134572f] FLINT_jll v301.300.102+0 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [3a97d323] MPFR_jll v4.2.2+0 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.0+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 9686.0 ms ✓ AbstractAlgebra → TestExt 1 dependency successfully precompiled in 10 seconds. 18 already precompiled. Resolving package versions... Updating `/tmp/jl_UiSlVi/Project.toml` ⌅ [c3fe647b] ↓ AbstractAlgebra v0.46.5 ⇒ v0.44.13 [loaded: v0.46.5] ⌅ [864edb3b] ↓ DataStructures v0.19.1 ⇒ v0.18.22 [loaded: v0.19.1] [961ee093] + ModelingToolkit v10.22.0 ⌅ [2edaba10] ↓ Nemo v0.51.1 ⇒ v0.49.5 [loaded: v0.51.1] Updating `/tmp/jl_UiSlVi/Manifest.toml` [47edcb42] + ADTypes v1.18.0 ⌅ [c3fe647b] ↓ AbstractAlgebra v0.46.5 ⇒ v0.44.13 [loaded: v0.46.5] [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.20.0 [4c555306] + ArrayLayouts v1.11.2 [e2ed5e7c] + Bijections v0.2.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.7.2 [70df07ce] + BracketingNonlinearSolve v1.4.0 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [a80b9123] + CommonMark v0.9.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] ↓ DataStructures v0.19.1 ⇒ v0.18.22 [loaded: v0.19.1] [2b5f629d] + DiffEqBase v6.189.1 [459566f4] + DiffEqCallbacks v4.9.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.7 [8d63f2c5] + DispatchDoctor v0.4.26 [31c24e10] + Distributions v0.25.120 [5b8099bc] + DomainSets v0.7.16 [7c1d4256] + DynamicPolynomials v0.6.3 [06fc5a27] + DynamicQuantities v1.10.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.13 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.3 [1a297f60] + FillArrays v1.14.0 [64ca27bc] + FindFirstFunctions v1.4.2 [6a86dc24] + FiniteDiff v2.28.1 [1fa38f19] + Format v1.3.7 ⌃ [f6369f11] + ForwardDiff v0.10.39 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.1 [34004b35] + HypergeometricFunctions v0.3.28 [3263718b] + ImplicitDiscreteSolve v1.2.0 [d25df0c9] + Inflate v0.1.5 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [82899510] + IteratorInterfaceExtensions v1.0.0 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v2.1.6 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.19.1 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.0 [d8e11817] + MLStyle v0.4.17 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [961ee093] + ModelingToolkit v10.22.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 ⌃ [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.6.4 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 ⌅ [2edaba10] ↓ Nemo v0.51.1 ⇒ v0.49.5 [loaded: v0.51.1] [be0214bd] + NonlinearSolveBase v1.15.0 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [bbf590c4] + OrdinaryDiffEqCore v1.34.0 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.6 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.34 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.37.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [9dfe8606] + SCCNonlinearSolve v1.5.0 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.118.1 [19f34311] + SciMLJacobianOperators v0.1.11 [c0aeaf25] + SciMLOperators v1.7.2 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.8.0 [699a6c99] + SimpleTraits v0.9.5 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [7792a7ef] + StrideArraysCore v0.5.8 [2efcf032] + SymbolicIndexingInterface v0.3.43 [19f23fe9] + SymbolicLimits v0.2.3 ⌃ [d1185830] + SymbolicUtils v3.31.0 [0c5d862f] + Symbolics v6.54.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [410a4b4d] + Tricks v0.1.12 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.24.0 [a7c27f48] + Unityper v0.1.6 ⌅ [e134572f] ↓ FLINT_jll v301.300.102+0 ⇒ v300.200.201+0 [loaded: v301.300.102+0] [61579ee1] + Ghostscript_jll v9.55.1+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [f50d1b31] + Rmath_jll v0.5.1+0 [9fa8497b] + Future v1.11.0 [a63ad114] + Mmap v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [4607b0f0] + SuiteSparse Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Resolving package versions... Updating `/tmp/jl_UiSlVi/Project.toml` [0c5d862f] + Symbolics v6.54.0 Manifest No packages added to or removed from `/tmp/jl_UiSlVi/Manifest.toml` Precompiling packages... 984.8 ms ✓ Parameters 790.5 ms ✓ PoissonRandom 1850.3 ms ✓ SimpleTraits 3067.3 ms ✓ DispatchDoctor 1606.1 ms ✓ TruncatedStacktraces 3099.9 ms ✓ Accessors → UnitfulExt 1551.1 ms ✓ MaybeInplace 4618.4 ms ✓ StatsBase 11512.9 ms ✓ CommonMark 2166.5 ms ✓ CPUSummary 3939.5 ms ✓ SciMLOperators 2467.7 ms ✓ SymbolicIndexingInterface 1440.5 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 8105.0 ms ✓ MultivariatePolynomials 2042.2 ms ✓ ResettableStacks 1451.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1622.0 ms ✓ Accessors → StaticArraysExt 910.5 ms ✓ BitTwiddlingConvenienceFunctions 1177.8 ms ✓ CloseOpenIntervals 1556.4 ms ✓ LayoutPointers 7086.6 ms ✓ Latexify 9858.2 ms ✓ ForwardDiff 10563.2 ms ✓ Graphs 2266.1 ms ✓ DispatchDoctor → DispatchDoctorChainRulesCoreExt 1255.1 ms ✓ DispatchDoctor → DispatchDoctorEnzymeCoreExt 6789.0 ms ✓ DynamicQuantities 1175.9 ms ✓ MaybeInplace → MaybeInplaceSparseArraysExt 8081.4 ms ✓ Distributions 50794.2 ms ✓ JuliaFormatter 1586.5 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1669.6 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 3957.7 ms ✓ RecursiveArrayTools 4827.2 ms ✓ DynamicPolynomials 1886.9 ms ✓ PolyesterWeave 2027.6 ms ✓ StrideArraysCore 2668.5 ms ✓ Latexify → SparseArraysExt 20438.6 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 4466.8 ms ✓ FastPower → FastPowerForwardDiffExt 3376.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 4178.2 ms ✓ Unitful → ForwardDiffExt 2200.5 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 2090.9 ms ✓ DynamicQuantities → DynamicQuantitiesLinearAlgebraExt 4120.9 ms ✓ DynamicQuantities → DynamicQuantitiesUnitfulExt 4925.0 ms ✓ Distributions → DistributionsTestExt 4621.2 ms ✓ Distributions → DistributionsChainRulesCoreExt 1906.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 11633.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 28679.8 ms ✓ SciMLBase 79320.7 ms ✓ SymbolicUtils 2320.0 ms ✓ Polyester 9786.2 ms ✓ NLSolversBase 3321.4 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 6393.3 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 30088.4 ms ✓ SciMLBase → SciMLBaseDistributionsExt 4656.7 ms ✓ SciMLBase → SciMLBaseMLStyleExt 7781.6 ms ✓ SciMLJacobianOperators 3626.9 ms ✓ SCCNonlinearSolve 9485.0 ms ✓ SymbolicLimits 2724.9 ms ✓ FastBroadcast 7396.0 ms ✓ LineSearches 11258.1 ms ✓ LineSearch 19628.3 ms ✓ NonlinearSolveBase 156679.5 ms ✓ Symbolics 2716.2 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 11244.5 ms ✓ Optim 3954.9 ms ✓ LineSearch → LineSearchLineSearchesExt 3982.4 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 3475.3 ms ✓ NonlinearSolveBase → NonlinearSolveBaseChainRulesCoreExt 3341.3 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 5508.0 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 6573.3 ms ✓ BracketingNonlinearSolve 11770.1 ms ✓ Symbolics → SymbolicsForwardDiffExt 9871.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt 5209.3 ms ✓ DiffEqBase 3185.0 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 16308.1 ms ✓ Symbolics → SymbolicsPreallocationToolsExt 4057.1 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 4839.2 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 4051.3 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 5108.3 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 8304.1 ms ✓ OrdinaryDiffEqCore 11127.2 ms ✓ DiffEqCallbacks 3475.4 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 27773.6 ms ✓ SimpleNonlinearSolve 33417.9 ms ✓ DiffEqNoiseProcess 4118.4 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 27359.5 ms ✓ JumpProcesses 3949.0 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 61687.9 ms ✓ ImplicitDiscreteSolve Info Given ModelingToolkit was explicitly requested, output will be shown live  ┌ Warning: `enqueue!(q::Queue, x)` is deprecated, use `Base.push!(q, x)` instead. │ caller = topsort_equations(eqs::Vector{Symbolics.Equation}, unknowns::Vector{SymbolicUtils.BasicSymbolic}; check::Bool) at alias_elimination.jl:429 └ @ Core ~/.julia/packages/ModelingToolkit/H1QXB/src/systems/alias_elimination.jl:429 ┌ Warning: `dequeue!(q::Queue)` is deprecated, use `Base.popfirst!(q)` instead. │ caller = topsort_equations(eqs::Vector{Symbolics.Equation}, unknowns::Vector{SymbolicUtils.BasicSymbolic}; check::Bool) at alias_elimination.jl:436 └ @ Core ~/.julia/packages/ModelingToolkit/H1QXB/src/systems/alias_elimination.jl:436 411036.1 ms ✓ ModelingToolkit 90 dependencies successfully precompiled in 1323 seconds. 180 already precompiled. 3 dependencies had output during precompilation: ┌ JumpProcesses │ WARNING: importing deprecated binding DataStructures.IntDisjointSets into Graphs. │ , use IntDisjointSet instead. └ ┌ ModelingToolkit │ [Output was shown above] └ ┌ Graphs │ WARNING: importing deprecated binding DataStructures.IntDisjointSets into Graphs. │ , use IntDisjointSet instead. └ Precompiling packages... 4180.2 ms ✓ DataStructures 20888.6 ms ✓ AbstractAlgebra 1486.2 ms ✓ FLINT_jll 5489.7 ms ✓ AbstractAlgebra → TestExt ✗ Nemo 8745.3 ms ✓ Groebner → GroebnerDynamicPolynomialsExt 5 dependencies successfully precompiled in 73 seconds. 39 already precompiled. 4 dependencies precompiled but different versions are currently loaded. Restart julia to access the new versions. Otherwise, loading dependents of these packages may trigger further precompilation to work with the unexpected versions. ┌ Error: Error during loading of extension GroebnerDynamicPolynomialsExt of Groebner, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 direct dependency failed to precompile: │ │ Nemo │ │ Failed to precompile Nemo [2edaba10-b0f1-5616-af89-8c11ac63239a] to "/home/pkgeval/.julia/compiled/v1.13/Nemo/jl_U05Dzn" (ProcessExited(1)). │ ERROR: LoadError: cannot declare Nemo.PosInf constant; it was already declared as an import │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [3] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Nemo.jl:440 │ [4] include(mod::Module, _path::String) │ @ Base ./Base.jl:308 │ [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3072 │ [6] top-level scope │ @ stdin:5 │ [7] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:2918 │ [9] include_string │ @ ./loading.jl:2928 [inlined] │ [10] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:328 │ [11] _start() │ @ Base ./client.jl:563 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Nemo.jl:1 │ in expression starting at stdin: └ @ Base loading.jl:1591 Precompiling packages... ✗ Nemo Info Given SymbolicsNemoExt was explicitly requested, output will be shown live  [ Info: Assuming ((1//128)*(√((5120//1)*(a^4)) - (80//1)*(a^2))) != 0 [ Info: Assuming ((1//128)*(√((5120//1)*(a^4)) - (80//1)*(a^2))) != 0 108341.1 ms ✓ Symbolics → SymbolicsNemoExt 1 dependency successfully precompiled in 140 seconds. 158 already precompiled. 1 dependency had output during precompilation: ┌ Symbolics → SymbolicsNemoExt │ [Output was shown above] └ ┌ Error: Error during loading of extension SymbolicsNemoExt of Symbolics, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 direct dependency failed to precompile: │ │ Nemo │ │ Failed to precompile Nemo [2edaba10-b0f1-5616-af89-8c11ac63239a] to "/home/pkgeval/.julia/compiled/v1.13/Nemo/jl_OumNve" (ProcessExited(1)). │ ERROR: LoadError: cannot declare Nemo.PosInf constant; it was already declared as an import │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [3] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Nemo.jl:440 │ [4] include(mod::Module, _path::String) │ @ Base ./Base.jl:308 │ [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3072 │ [6] top-level scope │ @ stdin:5 │ [7] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:2918 │ [9] include_string │ @ ./loading.jl:2928 [inlined] │ [10] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:328 │ [11] _start() │ @ Base ./client.jl:563 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Nemo.jl:1 │ in expression starting at stdin: └ @ Base loading.jl:1591 Precompiling packages... ✗ Nemo 22408.2 ms ✓ Symbolics → SymbolicsGroebnerExt 1 dependency successfully precompiled in 57 seconds. 163 already precompiled. ┌ Error: Error during loading of extension SymbolicsGroebnerExt of Symbolics, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 direct dependency failed to precompile: │ │ Nemo │ │ Failed to precompile Nemo [2edaba10-b0f1-5616-af89-8c11ac63239a] to "/home/pkgeval/.julia/compiled/v1.13/Nemo/jl_EpNbhx" (ProcessExited(1)). │ ERROR: LoadError: cannot declare Nemo.PosInf constant; it was already declared as an import │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [3] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Nemo.jl:440 │ [4] include(mod::Module, _path::String) │ @ Base ./Base.jl:308 │ [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3072 │ [6] top-level scope │ @ stdin:5 │ [7] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:2918 │ [9] include_string │ @ ./loading.jl:2928 [inlined] │ [10] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:328 │ [11] _start() │ @ Base ./client.jl:563 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Nemo.jl:1 │ in expression starting at stdin: └ @ Base loading.jl:1591 Precompiling packages... 47016.3 ms ✓ ModelingToolkit → MTKDeepDiffsExt 1 dependency successfully precompiled in 50 seconds. 271 already precompiled. Precompiling packages... ✗ Nemo 60609.1 ms ✓ StructuralIdentifiability → ModelingToolkitSIExt 1 dependency successfully precompiled in 94 seconds. 287 already precompiled. ┌ Error: Error during loading of extension ModelingToolkitSIExt of StructuralIdentifiability, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 direct dependency failed to precompile: │ │ Nemo │ │ Failed to precompile Nemo [2edaba10-b0f1-5616-af89-8c11ac63239a] to "/home/pkgeval/.julia/compiled/v1.13/Nemo/jl_HKWZPZ" (ProcessExited(1)). │ ERROR: LoadError: cannot declare Nemo.PosInf constant; it was already declared as an import │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [3] top-level scope │ @ ~/.julia/packages/Nemo/SKc7w/src/Nemo.jl:440 │ [4] include(mod::Module, _path::String) │ @ Base ./Base.jl:308 │ [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3072 │ [6] top-level scope │ @ stdin:5 │ [7] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:2918 │ [9] include_string │ @ ./loading.jl:2928 [inlined] │ [10] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:328 │ [11] _start() │ @ Base ./client.jl:563 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Infinity.jl:1 │ in expression starting at /home/pkgeval/.julia/packages/Nemo/SKc7w/src/Nemo.jl:1 │ in expression starting at stdin: └ @ Base loading.jl:1591 [ Info: Testing started [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y ┌ Warning: New variable c, treating as a scalar parameter └ @ StructuralIdentifiability ~/.julia/packages/StructuralIdentifiability/0tPYp/src/pb_representation.jl:94 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: a [ Info: Parameters: b [ Info: Inputs: c [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: a, b [ Info: Parameters: k1, k2 [ Info: Inputs: c [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y 2.123727 seconds (923.54 k allocations: 49.612 MiB, 99.44% compilation time) 0.002504 seconds (7.33 k allocations: 336.172 KiB) 0.002307 seconds (10.81 k allocations: 487.125 KiB) 0.002195 seconds (10.77 k allocations: 481.438 KiB) 0.002773 seconds (14.54 k allocations: 637.531 KiB) 0.001278 seconds (7.93 k allocations: 361.773 KiB) 0.000985 seconds (7.45 k allocations: 301.555 KiB) 14.744430 seconds (6.44 M allocations: 346.060 MiB, 1.05% gc time, 99.64% compilation time) [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: [ Info: Inputs: u [ Info: Outputs: y 0.256686 seconds (110.95 k allocations: 6.247 MiB, 97.83% compilation time) [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: [ Info: Inputs: u [ Info: Outputs: y 0.008081 seconds (9.79 k allocations: 543.148 KiB, 90.49% compilation time) [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a, b [ Info: Inputs: u [ Info: Outputs: y Coefficient extraction for rational functions: Test Failed at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/extract_coefficients.jl:27 Expression: Set(C) == Set([x // 1, (y + 3) // 1, y ^ 2 // 1, one(R) // 1, 3 * one(R) // 1, -((x ^ 2 + y ^ 2)) // 1]) Evaluated: Set(AbstractAlgebra.Generic.FracFieldElem{QQMPolyRingElem}[1//3, -1//3*x^2 - 1//3*y^2, 1//3*y^2, 1//3*x, 1, 1//3*y + 1]) == Set(AbstractAlgebra.Generic.FracFieldElem{QQMPolyRingElem}[y^2, 3, y + 3, 1, x, -x^2 - y^2]) Stacktrace: [1] top-level scope @ ~/.julia/packages/StructuralIdentifiability/0tPYp/test/extract_coefficients.jl:2 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1952 [inlined] [3] macro expansion @ ~/.julia/packages/StructuralIdentifiability/0tPYp/test/extract_coefficients.jl:27 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:751 [inlined] [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y1, y2 IOEQS: Dict{QQMPolyRingElem, QQMPolyRingElem}(y2(t)_1 => -a*y2(t)_0 + a*u(t)_0 + y2(t)_1 - u(t)_1, y1(t)_2 => -y1(t)_0 + y1(t)_2) [ Info: Summary of the model: [ Info: State variables: x0, x1 [ Info: Parameters: a01, a12, a21 [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x0, x1 [ Info: Parameters: a, b, c, d [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: S, I, W, R [ Info: Parameters: a, bi, bw, gam, k, mu, xi [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4 [ Info: Parameters: alpha, b, beta, c, delta, gama, sigma [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a1, a2, a21 [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a1, a2, a21 [ Info: Inputs: u [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a01, a12, a13, a21, a31 [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: S, E, In [ Info: Parameters: N, a, b, nu [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Computing IO-equations [ Info: Computed IO-equations in 0.004044263 seconds [ Info: Computing Wronskians [ Info: Computed Wronskians in 6.878338829 seconds [ Info: Dimensions of the Wronskians [3] [ Info: Ranks of the Wronskians computed in 0.062295617 seconds [ Info: Global identifiability assessed in 55.76400527 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Functions to check involve states [ Info: Computing IO-equations [ Info: Computed IO-equations in 0.003912734 seconds [ Info: No parameters, so Wronskian computation is not needed [ Info: Global identifiability assessed in 0.814829512 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Global identifiability assessed in 5.205e-5 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Functions to check involve states [ Info: Computing IO-equations [ Info: Computed IO-equations in 0.034114951 seconds [ Info: Computing Wronskians [ Info: Computed Wronskians in 0.456538522 seconds [ Info: Dimensions of the Wronskians [5] [ Info: Ranks of the Wronskians computed in 3.473e-5 seconds [ Info: Simplifying generating set. Simplification level: standard ⌜ # Computing specializations.. Time: 0:00:14 ✓ # Computing specializations.. Time: 0:00:16 [ Info: Search for polynomial generators concluded in 13.107819822 [ Info: Selecting generators in 0.013715412 [ Info: Inclusion checked with probability 0.9955 in 0.066265431 seconds [ Info: Global identifiability assessed in 102.469951472 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Computing IO-equations [ Info: Computed IO-equations in 1.599718028 seconds [ Info: Computing Wronskians [ Info: Computed Wronskians in 1.57170168 seconds [ Info: Dimensions of the Wronskians [676] [ Info: Ranks of the Wronskians computed in 0.076222828 seconds ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 43 running 1 of 1 signal (10): User defined signal 1 _ZNSt6vectorISt4pairIPN4llvm10BasicBlockESt8optionalINS1_12SuccIteratorINS1_11InstructionES2_EEEESaIS9_EE17_M_realloc_insertIJS9_EEEvN9__gnu_cxx17__normal_iteratorIPS9_SB_EEDpOT_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZNSt6vectorISt4pairIPN4llvm10BasicBlockESt8optionalINS1_12SuccIteratorINS1_11InstructionES2_EEEESaIS9_EE12emplace_backIJS9_EEERS9_DpOT_.isra.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZNK4llvm8LoopBaseINS_10BasicBlockENS_4LoopEE10verifyLoopEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6detail18UniqueFunctionBaseIvJNS_9StringRefENS_3AnyEEE8CallImplIZNS_25FunctionToLoopPassAdaptor3runERNS_8FunctionERNS_15AnalysisManagerIS7_JEEEEUlS2_S3_E_EEvPvS2_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZNK4llvm19PassInstrumentation13runBeforePassINS_4LoopENS_6detail11PassConceptIS2_NS_15AnalysisManagerIS2_JRNS_27LoopStandardAnalysisResultsEEEEJS7_RNS_10LPMUpdaterEEEEEEbRKT0_RKT_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE13runSinglePassIS1_St10unique_ptrINS_6detail11PassConceptIS1_S5_JS4_S7_EEESt14default_deleteISD_EEEESt8optionalINS_17PreservedAnalysesEERT_RT0_RS5_S4_S7_RNS_19PassInstrumentationE.isra.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE24runWithoutLoopNestPassesERS1_RS5_S4_S7_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE3runERS1_RS5_S4_S7_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm25FunctionToLoopPassAdaptor3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:791 operator() at /source/src/jitlayers.cpp:1510 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1471 [inlined] operator() at /source/src/jitlayers.cpp:1646 [inlined] addModule at /source/src/jitlayers.cpp:2103 jl_compile_codeinst_now at /source/src/jitlayers.cpp:682 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:873 jl_compile_method_internal at /source/src/gf.c:3594 _jl_invoke at /source/src/gf.c:4052 [inlined] ijl_apply_generic at /source/src/gf.c:4257 __groebner1 at /home/pkgeval/.julia/packages/Groebner/k40dp/src/groebner/groebner.jl:57 unknown function (ip: 0x726eb7dbf229) at (unknown file) _jl_invoke at /source/src/gf.c:4060 [inlined] ijl_apply_generic at /source/src/gf.c:4257 _groebner1 at /home/pkgeval/.julia/packages/Groebner/k40dp/src/groebner/groebner.jl:34 unknown function (ip: 0x726eb7dbbf50) at (unknown file) _jl_invoke at /source/src/gf.c:4060 [inlined] ijl_apply_generic at /source/src/gf.c:4257 groebner0 at /home/pkgeval/.julia/packages/Groebner/k40dp/src/groebner/groebner.jl:10 #groebner#172 at /home/pkgeval/.julia/packages/Groebner/k40dp/src/interface.jl:111 [inlined] groebner at /home/pkgeval/.julia/packages/Groebner/k40dp/src/interface.jl:109 [inlined] field_contains_algebraic at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/RationalFunctionFields/RationalFunctionField.jl:344 field_contains at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/RationalFunctionFields/RationalFunctionField.jl:367 #check_identifiability#369 at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/global_identifiability.jl:178 check_identifiability at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/global_identifiability.jl:178 [inlined] #assess_global_identifiability#384 at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/global_identifiability.jl:286 assess_global_identifiability at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/global_identifiability.jl:286 [inlined] macro expansion at ./timing.jl:461 [inlined] #_assess_identifiability#566 at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/StructuralIdentifiability.jl:164 _assess_identifiability at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/StructuralIdentifiability.jl:130 [inlined] #562 at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/StructuralIdentifiability.jl:111 with_logstate at ./logging/logging.jl:540 with_logger at ./logging/logging.jl:651 [inlined] #assess_identifiability#559 at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/StructuralIdentifiability.jl:109 [inlined] assess_identifiability at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/StructuralIdentifiability.jl:100 unknown function (ip: 0x726ebd9bd946) at (unknown file) _jl_invoke at /source/src/gf.c:4060 [inlined] ijl_apply_generic at /source/src/gf.c:4257 jl_apply at /source/src/julia.h:2262 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:772 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 include_string at ./loading.jl:2918 _jl_invoke at /source/src/gf.c:4060 [inlined] ijl_apply_generic at /source/src/gf.c:4257 _include at ./loading.jl:2978 include at ./Base.jl:309 IncludeInto at ./Base.jl:310 unknown function (ip: 0x726e8852c172) at (unknown file) _jl_invoke at /source/src/gf.c:4060 [inlined] ijl_apply_generic at /source/src/gf.c:4257 macro expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/runtests.jl:162 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:1952 [inlined] macro expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/runtests.jl:160 [inlined] macro expansion at ./timing.jl:645 [inlined] top-level scope at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/runtests.jl:159 _jl_invoke at /source/src/gf.c:4060 [inlined] ijl_invoke at /source/src/gf.c:4067 jl_toplevel_eval_flex at /source/src/toplevel.c:761 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 include_string at ./loading.jl:2918 _jl_invoke at /source/src/gf.c:4060 [inlined] ijl_apply_generic at /source/src/gf.c:4257 _include at ./loading.jl:2978 include at ./Base.jl:309 IncludeInto at ./Base.jl:310 jfptr_IncludeInto_69077.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4060 [inlined] ijl_apply_generic at /source/src/gf.c:4257 jl_apply at /source/src/julia.h:2262 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:690 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:772 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 exec_options at ./client.jl:296 _start at ./client.jl:563 jfptr__start_49668.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4060 [inlined] ijl_apply_generic at /source/src/gf.c:4257 jl_apply at /source/src/julia.h:2262 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x726ed3259249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_72434.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4060 [inlined] ijl_apply_generic at /source/src/gf.c:4257 jl_apply at /source/src/julia.h:2262 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000726405720010 Total snapshots: 380. Utilization: 0% ╎380 @Base/task.jl:1137 wait_forever() 379╎ 380 @Base/task.jl:1200 wait() [ Info: Global identifiability assessed in 37.449659296 seconds [ Info: Assessing local identifiability [43] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/identifiability.jl:1 gc_mark_objarray at /source/src/gc-stock.c:1806 gc_mark_outrefs at /source/src/gc-stock.c:2417 [inlined] gc_mark_loop_serial_ at /source/src/gc-stock.c:2524 gc_mark_loop_serial at /source/src/gc-stock.c:2547 gc_mark_loop at /source/src/gc-stock.c:2735 [inlined] _jl_gc_collect at /source/src/gc-stock.c:3080 ijl_gc_collect at /source/src/gc-stock.c:3489 maybe_collect at /source/src/gc-stock.c:349 [inlined] jl_gc_small_alloc_inner at /source/src/gc-stock.c:725 jl_gc_small_alloc_noinline at /source/src/gc-stock.c:783 [inlined] jl_gc_alloc_ at /source/src/gc-stock.c:797 jl_alloc_genericmemory_unchecked at /source/src/genericmemory.c:41 GenericMemory at ./boot.jl:588 [inlined] Array at ./boot.jl:648 [inlined] Array at ./boot.jl:661 [inlined] fill at ./array.jl:580 [inlined] fill at ./array.jl:578 [inlined] adce_pass! at ./../usr/share/julia/Compiler/src/ssair/passes.jl:2058 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1046 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1059 [inlined] optimize at ./../usr/share/julia/Compiler/src/optimize.jl:1032 jfptr_optimize_82918.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4060 [inlined] ijl_apply_generic at /source/src/gf.c:4257 finish_nocycle at ./../usr/share/julia/Compiler/src/typeinfer.jl:232 jfptr_finish_nocycle_82659.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4060 [inlined] ijl_apply_generic at /source/src/gf.c:4257 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4528 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1385 add_codeinsts_to_jit! at ./../usr/share/julia/Compiler/src/typeinfer.jl:1536 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1569 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1577 jfptr_typeinf_ext_toplevel_86015.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4060 [inlined] ijl_apply_generic at /source/src/gf.c:4257 jl_apply at /source/src/julia.h:2262 [inlined] jl_type_infer at /source/src/gf.c:461 jl_compile_method_internal at /source/src/gf.c:3582 _jl_invoke at /source/src/gf.c:4052 [inlined] ijl_apply_generic at /source/src/gf.c:4257 jl_apply at /source/src/julia.h:2262 [inlined] jl_f_invokelatest at /source/src/builtins.c:883 profile_printing_listener at ./Base.jl:336 #start_profile_listener##0 at ./Base.jl:354 jfptr_YY.start_profile_listenerYY.YY.0_16856.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4060 [inlined] ijl_apply_generic at /source/src/gf.c:4257 jl_apply at /source/src/julia.h:2262 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 322680837 (Pool: 322677023; Big: 3814); GC: 115 PkgEval terminated after 2735.94s: test duration exceeded the time limit