Package evaluation of ProteinEnsembles on Julia 1.13.0-DEV.1125 (fd1c6fd302*) started at 2025-09-16T07:45:26.178 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.87s ################################################################################ # Installation # Installing ProteinEnsembles... Resolving package versions... Installed Bzip2_jll ─────────────── v1.0.9+0 Installed Rmath_jll ─────────────── v0.5.1+0 Installed HarfBuzz_jll ──────────── v8.5.1+0 Installed Libuuid_jll ───────────── v2.41.1+0 Installed Adapt ─────────────────── v4.3.0 Installed FillArrays ────────────── v1.14.0 Installed DataStructures ────────── v0.18.22 Installed LazyGrids ─────────────── v0.5.0 Installed Libmount_jll ──────────── v2.41.1+0 Installed oneTBB_jll ────────────── v2022.0.0+0 Installed KernelDensity ─────────── v0.6.10 Installed HypergeometricFunctions ─ v0.3.28 Installed MKL_jll ───────────────── v2025.2.0+0 Installed AliasTables ───────────── v1.1.3 Installed StatsBase ─────────────── v0.34.6 Installed Cairo_jll ─────────────── v1.18.5+0 Installed Xorg_libXau_jll ───────── v1.0.13+0 Installed Xorg_libX11_jll ───────── v1.8.12+0 Installed OrderedCollections ────── v1.8.1 Installed Graphite2_jll ─────────── v1.3.15+0 Installed Compat ────────────────── v4.18.0 Installed Cairo ─────────────────── v1.1.1 Installed DataAPI ───────────────── v1.16.0 Installed IntelOpenMP_jll ───────── v2025.2.0+0 Installed Statistics ────────────── v1.11.1 Installed StatsAPI ──────────────── v1.7.1 Installed OffsetArrays ──────────── v1.17.0 Installed Colors ────────────────── v0.12.11 Installed PrecompileTools ───────── v1.3.3 Installed Loess ─────────────────── v0.6.4 Installed CoupledFields ─────────── v0.3.0 Installed ProgressMeter ─────────── v1.11.0 Installed Measures ──────────────── v0.3.2 Installed Libffi_jll ────────────── v3.4.7+0 Installed StaticArraysCore ──────── v1.4.3 Installed Pixman_jll ────────────── v0.44.2+0 Installed StaticArrays ──────────── v1.9.15 Installed TextWrap ──────────────── v1.0.2 Installed ChainRulesCore ────────── v1.26.0 Installed Fontconfig_jll ────────── v2.17.1+0 Installed Expat_jll ─────────────── v2.7.1+0 Installed IrrationalConstants ───── v0.2.4 Installed Distances ─────────────── v0.10.12 Installed AbstractFFTs ──────────── v1.5.0 Installed ColorTypes ────────────── v0.11.5 Installed GettextRuntime_jll ────── v0.22.4+0 Installed Contour ───────────────── v0.6.3 Installed QuadGK ────────────────── v2.11.2 Installed AxisAlgorithms ────────── v1.1.0 Installed libpng_jll ────────────── v1.6.50+0 Installed Ratios ────────────────── v0.4.5 Installed NaNMath ───────────────── v1.1.3 Installed Glib_jll ──────────────── v2.86.0+0 Installed Graphics ──────────────── v1.1.3 Installed FriBidi_jll ───────────── v1.0.17+0 Installed Requires ──────────────── v1.3.1 Installed OpenSpecFun_jll ───────── v0.5.6+0 Installed LogExpFunctions ───────── v0.3.29 Installed Parsers ───────────────── v2.8.3 Installed ArgParse ──────────────── v1.2.0 Installed JSON ──────────────────── v0.21.4 Installed Interpolations ────────── v0.16.2 Installed Xorg_libXrender_jll ───── v0.9.12+0 Installed Rmath ─────────────────── v0.8.0 Installed StatsFuns ─────────────── v1.5.0 Installed WoodburyMatrices ──────── v1.0.0 Installed Xorg_libxcb_jll ───────── v1.17.1+0 Installed PtrArrays ─────────────── v1.3.0 Installed ProteinEnsembles ──────── v0.3.1 Installed Xorg_libXdmcp_jll ─────── v1.1.6+0 Installed Distributions ─────────── v0.25.120 Installed Reexport ──────────────── v1.2.2 Installed LZO_jll ───────────────── v2.10.3+0 Installed SpecialFunctions ──────── v2.5.1 Installed Missings ──────────────── v1.2.0 Installed FreeType2_jll ─────────── v2.13.4+0 Installed FixedPointNumbers ─────── v0.8.5 Installed Showoff ───────────────── v1.0.3 Installed Preferences ───────────── v1.5.0 Installed FFTW ──────────────────── v1.9.0 Installed FFTW_jll ──────────────── v3.3.11+0 Installed JLLWrappers ───────────── v1.7.1 Installed Libiconv_jll ──────────── v1.18.0+0 Installed LLVMOpenMP_jll ────────── v18.1.8+0 Installed PDMats ────────────────── v0.11.35 Installed IndirectArrays ────────── v1.0.0 Installed Xorg_libXext_jll ──────── v1.3.7+0 Installed Pango_jll ─────────────── v1.56.4+0 Installed IterTools ─────────────── v1.10.0 Installed SortingAlgorithms ─────── v1.2.2 Installed Hexagons ──────────────── v0.2.0 Installed Grisu ─────────────────── v1.0.2 Installed Xorg_xtrans_jll ───────── v1.6.0+0 Installed DocStringExtensions ───── v0.9.5 Installed Gadfly ────────────────── v1.4.1 Installed CategoricalArrays ─────── v0.10.8 Installed Compose ───────────────── v0.9.6 Installing 30 artifacts Installed artifact Graphite2 120.2 KiB Installed artifact Libffi 44.2 KiB Installed artifact Expat 274.7 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Pango 1.1 MiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact FreeType2 1.5 MiB Installed artifact libpng 328.4 KiB Installed artifact Pixman 372.2 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Bzip2 503.5 KiB Installed artifact Fontconfig 984.8 KiB Installed artifact LZO 208.9 KiB Installed artifact FriBidi 78.9 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact GettextRuntime 543.0 KiB Installed artifact FFTW 2.2 MiB Installed artifact Libuuid 3.6 MiB Installed artifact Rmath 121.9 KiB Installed artifact oneTBB 435.6 KiB Installed artifact Libiconv 1.9 MiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact Glib 7.7 MiB Installed artifact Cairo 2.2 MiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Libmount 6.5 MiB Installed artifact Xorg_libX11 13.9 MiB Updating `~/.julia/environments/v1.13/Project.toml` [186d2b2d] + ProteinEnsembles v0.3.1 Updating `~/.julia/environments/v1.13/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [c7e460c6] + ArgParse v1.2.0 [13072b0f] + AxisAlgorithms v1.1.0 [159f3aea] + Cairo v1.1.1 ⌅ [324d7699] + CategoricalArrays v0.10.8 [d360d2e6] + ChainRulesCore v1.26.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌅ [5ae59095] + Colors v0.12.11 [34da2185] + Compat v4.18.0 [a81c6b42] + Compose v0.9.6 [d38c429a] + Contour v0.6.3 [7ad07ef1] + CoupledFields v0.3.0 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [7a1cc6ca] + FFTW v1.9.0 [1a297f60] + FillArrays v1.14.0 [53c48c17] + FixedPointNumbers v0.8.5 [c91e804a] + Gadfly v1.4.1 [a2bd30eb] + Graphics v1.1.3 [42e2da0e] + Grisu v1.0.2 [a1b4810d] + Hexagons v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [9b13fd28] + IndirectArrays v1.0.0 [a98d9a8b] + Interpolations v0.16.2 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v0.21.4 [5ab0869b] + KernelDensity v0.6.10 ⌅ [7031d0ef] + LazyGrids v0.5.0 [4345ca2d] + Loess v0.6.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [442fdcdd] + Measures v0.3.2 [e1d29d7a] + Missings v1.2.0 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [92933f4c] + ProgressMeter v1.11.0 [186d2b2d] + ProteinEnsembles v0.3.1 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [992d4aef] + Showoff v1.0.3 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [b718987f] + TextWrap v1.0.2 [efce3f68] + WoodburyMatrices v1.0.0 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [2e619515] + Expat_jll v2.7.1+0 [f5851436] + FFTW_jll v3.3.11+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [7746bdde] + Glib_jll v2.86.0+0 [3b182d85] + Graphite2_jll v1.3.15+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [e9f186c6] + Libffi_jll v3.4.7+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.1+0 [38a345b3] + Libuuid_jll v2.41.1+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [36c8627f] + Pango_jll v1.56.4+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [f50d1b31] + Rmath_jll v0.5.1+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [b53b4c65] + libpng_jll v1.6.50+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.67.0+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 14.61s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5032.9 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... ERROR: LoadError: The following 2 direct dependencies failed to precompile: Cairo Failed to precompile Cairo [159f3aea-2a34-519c-b102-8c37f9878175] to "/home/pkgeval/.julia/compiled/v1.13/Cairo/jl_nV12b8" (ProcessExited(1)). ERROR: LoadError: could not load symbol "pango_version_string": Stacktrace: [1] top-level scope @ ~/.julia/packages/Cairo/FQrbN/src/Cairo.jl:30 [2] include(mod::Module, _path::String) @ Base ./Base.jl:308 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3072 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2918 [7] include_string @ ./loading.jl:2928 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [9] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/Cairo/FQrbN/src/Cairo.jl:1 in expression starting at stdin:5 ProteinEnsembles Failed to precompile ProteinEnsembles [186d2b2d-8ad5-54a6-bcea-66047609c611] to "/home/pkgeval/.julia/compiled/v1.13/ProteinEnsembles/jl_CquI0f" (ProcessExited(1)). ERROR: LoadError: could not load symbol "pango_version_string": Stacktrace: [1] top-level scope @ ~/.julia/packages/Cairo/FQrbN/src/Cairo.jl:30 [2] include(mod::Module, _path::String) @ Base ./Base.jl:308 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3072 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2918 [7] include_string @ ./loading.jl:2928 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [9] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/Cairo/FQrbN/src/Cairo.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Cairo [159f3aea-2a34-519c-b102-8c37f9878175] to "/home/pkgeval/.julia/compiled/v1.13/Cairo/jl_Z1b8TE" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3359 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3237 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2701 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#234 @ ./reflection.jl:1335 [inlined] [9] invokelatest_gr @ ./reflection.jl:1327 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3930 [11] maybe_cachefile_lock @ ./loading.jl:3927 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2687 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2515 [14] macro expansion @ ./loading.jl:2443 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2407 [17] require @ ./loading.jl:2383 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr) @ Base ./module.jl:111 [20] top-level scope @ ~/.julia/packages/ProteinEnsembles/TB23o/src/plot.jl:11 [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:309 [22] top-level scope @ ~/.julia/packages/ProteinEnsembles/TB23o/src/ProteinEnsembles.jl:20 [23] include(mod::Module, _path::String) @ Base ./Base.jl:308 [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3072 [25] top-level scope @ stdin:5 [26] eval(m::Module, e::Any) @ Core ./boot.jl:489 [27] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2918 [28] include_string @ ./loading.jl:2928 [inlined] [29] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [30] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/ProteinEnsembles/TB23o/src/plot.jl:11 in expression starting at /home/pkgeval/.julia/packages/ProteinEnsembles/TB23o/src/ProteinEnsembles.jl:3 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 314.95s ################################################################################ # Testing # Testing ProteinEnsembles Status `/tmp/jl_x3buzq/Project.toml` [c7e460c6] ArgParse v1.2.0 [159f3aea] Cairo v1.1.1 ⌅ [5ae59095] Colors v0.12.11 [c91e804a] Gadfly v1.4.1 [92933f4c] ProgressMeter v1.11.0 [186d2b2d] ProteinEnsembles v0.3.1 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_x3buzq/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [c7e460c6] ArgParse v1.2.0 [13072b0f] AxisAlgorithms v1.1.0 [159f3aea] Cairo v1.1.1 ⌅ [324d7699] CategoricalArrays v0.10.8 [d360d2e6] ChainRulesCore v1.26.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌅ [5ae59095] Colors v0.12.11 [34da2185] Compat v4.18.0 [a81c6b42] Compose v0.9.6 [d38c429a] Contour v0.6.3 [7ad07ef1] CoupledFields v0.3.0 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [7a1cc6ca] FFTW v1.9.0 [1a297f60] FillArrays v1.14.0 [53c48c17] FixedPointNumbers v0.8.5 [c91e804a] Gadfly v1.4.1 [a2bd30eb] Graphics v1.1.3 [42e2da0e] Grisu v1.0.2 [a1b4810d] Hexagons v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [9b13fd28] IndirectArrays v1.0.0 [a98d9a8b] Interpolations v0.16.2 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [5ab0869b] KernelDensity v0.6.10 ⌅ [7031d0ef] LazyGrids v0.5.0 [4345ca2d] Loess v0.6.4 [2ab3a3ac] LogExpFunctions v0.3.29 [442fdcdd] Measures v0.3.2 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [92933f4c] ProgressMeter v1.11.0 [186d2b2d] ProteinEnsembles v0.3.1 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c84ed2f1] Ratios v0.4.5 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [992d4aef] Showoff v1.0.3 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [b718987f] TextWrap v1.0.2 [efce3f68] WoodburyMatrices v1.0.0 [6e34b625] Bzip2_jll v1.0.9+0 [83423d85] Cairo_jll v1.18.5+0 [2e619515] Expat_jll v2.7.1+0 [f5851436] FFTW_jll v3.3.11+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [b0724c58] GettextRuntime_jll v0.22.4+0 [7746bdde] Glib_jll v2.86.0+0 [3b182d85] Graphite2_jll v1.3.15+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 [e9f186c6] Libffi_jll v3.4.7+0 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.1+0 [38a345b3] Libuuid_jll v2.41.1+0 [856f044c] MKL_jll v2025.2.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [36c8627f] Pango_jll v1.56.4+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [f50d1b31] Rmath_jll v0.5.1+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [b53b4c65] libpng_jll v1.6.50+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.0+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... ✗ Cairo Info Given ProteinEnsembles was explicitly requested, output will be shown live  ERROR: LoadError: could not load symbol "pango_version_string":  Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Cairo/FQrbN/src/Cairo.jl:30  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:308  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:3072  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2918  [7] include_string  @ ./loading.jl:2928 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:328  [9] _start()  @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/Cairo/FQrbN/src/Cairo.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Cairo [159f3aea-2a34-519c-b102-8c37f9878175] to "/home/pkgeval/.julia/compiled/v1.13/Cairo/jl_DZH1CI" (ProcessExited(1)). Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3359  [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)  @ Base ./loading.jl:3237  [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})()  @ Base ./loading.jl:2701  [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94  [6] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined]  [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115  [8] #invokelatest_gr#234  @ ./reflection.jl:1335 [inlined]  [9] invokelatest_gr  @ ./reflection.jl:1327 [inlined]  [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3930  [11] maybe_cachefile_lock  @ ./loading.jl:3927 [inlined]  [12] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2687  [13] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2515  [14] macro expansion  @ ./loading.jl:2443 [inlined]  [15] macro expansion  @ ./lock.jl:376 [inlined]  [16] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2407  [17] require  @ ./loading.jl:2383 [inlined]  [18] eval_import_path  @ ./module.jl:36 [inlined]  [19] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)  @ Base ./module.jl:111  [20] top-level scope  @ ~/.julia/packages/ProteinEnsembles/TB23o/src/plot.jl:11  [21] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:309  [22] top-level scope  @ ~/.julia/packages/ProteinEnsembles/TB23o/src/ProteinEnsembles.jl:20  [23] include(mod::Module, _path::String)  @ Base ./Base.jl:308  [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3072  [25] top-level scope  @ stdin:5  [26] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [27] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2918  [28] include_string  @ ./loading.jl:2928 [inlined]  [29] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:328  [30] _start()  @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/ProteinEnsembles/TB23o/src/plot.jl:11 in expression starting at /home/pkgeval/.julia/packages/ProteinEnsembles/TB23o/src/ProteinEnsembles.jl:3 in expression starting at stdin:5 ✗ ProteinEnsembles 0 dependencies successfully precompiled in 19 seconds. 158 already precompiled. ERROR: LoadError: The following 2 direct dependencies failed to precompile: Cairo Failed to precompile Cairo [159f3aea-2a34-519c-b102-8c37f9878175] to "/home/pkgeval/.julia/compiled/v1.13/Cairo/jl_NYEDRs" (ProcessExited(1)). ERROR: LoadError: could not load symbol "pango_version_string": Stacktrace: [1] top-level scope @ ~/.julia/packages/Cairo/FQrbN/src/Cairo.jl:30 [2] include(mod::Module, _path::String) @ Base ./Base.jl:308 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3072 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2918 [7] include_string @ ./loading.jl:2928 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [9] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/Cairo/FQrbN/src/Cairo.jl:1 in expression starting at stdin:5 ProteinEnsembles Failed to precompile ProteinEnsembles [186d2b2d-8ad5-54a6-bcea-66047609c611] to "/home/pkgeval/.julia/compiled/v1.13/ProteinEnsembles/jl_NSftDx" (ProcessExited(1)). ERROR: LoadError: could not load symbol "pango_version_string": Stacktrace: [1] top-level scope @ ~/.julia/packages/Cairo/FQrbN/src/Cairo.jl:30 [2] include(mod::Module, _path::String) @ Base ./Base.jl:308 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3072 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2918 [7] include_string @ ./loading.jl:2928 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [9] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/Cairo/FQrbN/src/Cairo.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Cairo [159f3aea-2a34-519c-b102-8c37f9878175] to "/home/pkgeval/.julia/compiled/v1.13/Cairo/jl_DZH1CI" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3359 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3237 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2701 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#234 @ ./reflection.jl:1335 [inlined] [9] invokelatest_gr @ ./reflection.jl:1327 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3930 [11] maybe_cachefile_lock @ ./loading.jl:3927 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2687 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2515 [14] macro expansion @ ./loading.jl:2443 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2407 [17] require @ ./loading.jl:2383 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr) @ Base ./module.jl:111 [20] top-level scope @ ~/.julia/packages/ProteinEnsembles/TB23o/src/plot.jl:11 [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:309 [22] top-level scope @ ~/.julia/packages/ProteinEnsembles/TB23o/src/ProteinEnsembles.jl:20 [23] include(mod::Module, _path::String) @ Base ./Base.jl:308 [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3072 [25] top-level scope @ stdin:5 [26] eval(m::Module, e::Any) @ Core ./boot.jl:489 [27] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2918 [28] include_string @ ./loading.jl:2928 [inlined] [29] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [30] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/ProteinEnsembles/TB23o/src/plot.jl:11 in expression starting at /home/pkgeval/.julia/packages/ProteinEnsembles/TB23o/src/ProteinEnsembles.jl:3 in expression starting at stdin:5 in expression starting at /home/pkgeval/.julia/packages/ProteinEnsembles/TB23o/test/runtests.jl:1 Testing failed after 28.43s ERROR: LoadError: Package ProteinEnsembles errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2673 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2522 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:308 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:330 [14] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 388.7s: package fails to precompile