Package evaluation of ClimateModels on Julia 1.13.0-DEV.1125 (fd1c6fd302*) started at 2025-09-16T06:05:01.781 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.96s ################################################################################ # Installation # Installing ClimateModels... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [f6adb021] + ClimateModels v0.3.9 Updating `~/.julia/environments/v1.13/Manifest.toml` [d1d4a3ce] + BitFlags v0.1.9 [179af706] + CFTime v0.2.3 [336ed68f] + CSV v0.10.15 [0b6fb165] + ChunkCodecCore v1.0.0 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [f6adb021] + ClimateModels v0.3.9 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.18.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [124859b0] + DataDeps v0.7.13 [a93c6f00] + DataFrames v1.8.0 [864edb3b] + DataStructures v0.19.1 [e2d170a0] + DataValueInterfaces v1.0.0 [9c0b9be8] + Dataverse v0.2.7 [460bff9d] + ExceptionUnwrapping v0.1.11 [5789e2e9] + FileIO v1.17.0 [48062228] + FilePathsBase v0.9.24 [d7ba0133] + Git v1.5.0 [c27321d9] + Glob v1.3.1 [cd3eb016] + HTTP v1.10.17 [076d061b] + HashArrayMappedTries v0.2.0 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.6.2 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [e6f89c97] + LoggingExtras v1.1.0 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.9 [e1d29d7a] + Missings v1.2.0 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.5.0 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.0.10 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e506255] + ScopedValues v1.5.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.2 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.1 [fd094767] + Suppressor v0.2.8 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [a5390f91] + ZipFile v0.10.1 [2e619515] + Expat_jll v2.7.1+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.51.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.6+2 [9bd350c2] + OpenSSH_jll v10.0.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.67.0+0 [3f19e933] + p7zip_jll v17.6.0+0 Installation completed after 4.88s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:76 Precompiling package dependencies... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 7 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_72434.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4060 [inlined] ijl_apply_generic at /source/src/gf.c:4257 jl_apply at /source/src/julia.h:2262 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000709a879be860 Total snapshots: 328. Utilization: 0% ╎328 @Base/task.jl:1137 wait_forever() 327╎ 328 @Base/task.jl:1200 wait() Task 0x0000709a8680ee00 Total snapshots: 5. Utilization: 100% ╎5 @Base/precompilation.jl:1018 (::Base.Precompilation.var"#_precompilepkgs##… ╎ 5 @Base/timing.jl:461 macro expansion ╎ 2 @Base/precompilation.jl:1215 precompile_pkgs_maybe_cachefile_lock(f::Bas… ╎ 2 @Base/loading.jl:3915 compilecache_pidfile_path ╎ 2 @Base/loading.jl:3915 #compilecache_pidfile_path#919 ╎ 2 @Base/loading.jl:3196 compilecache_path ╎ ╎ 2 @Base/loading.jl:3199 compilecache_path(pkg::Base.PkgId, prefs_hash:… ╎ ╎ 1 @Base/file.jl:237 mkpath ╎ ╎ 1 @Base/file.jl:245 mkpath(path::String; mode::UInt16) ╎ ╎ 1 @Base/file.jl:177 mkdir 1╎ ╎ 1 @Base/file.jl:180 mkdir(path::String; mode::UInt16) ╎ ╎ 1 @Base/stat.jl:587 isdir ╎ ╎ 1 @Base/stat.jl:192 stat(path::String) ╎ 3 @Base/precompilation.jl:1216 precompile_pkgs_maybe_cachefile_lock(f::Bas… ╎ 3 @Base/reflection.jl:1327 invokelatest_gr ╎ 3 @Base/reflection.jl:1335 #invokelatest_gr#234 ╎ 3 @FileWatching/…dfile.jl:113 kwcall(::@NamedTuple{stale_age::Int64}, :… ╎ ╎ 3 @FileWatching/…file.jl:115 trymkpidlock(::Function, ::Vararg{Any}; k… ╎ ╎ 3 @FileWatching/…file.jl:89 kwcall(::@NamedTuple{stale_age::Int64, wa… ╎ ╎ 3 @FileWatching/…file.jl:89 #mkpidlock#7 ╎ ╎ 3 @FileWatching/…file.jl:91 kwcall(::@NamedTuple{stale_age::Int64, … ╎ ╎ 1 @FileWatching/…ile.jl:92 mkpidlock(f::Base.Precompilation.var"#_… ╎ ╎ ╎ 1 @FileWatching/…ile.jl:62 mkpidlock ╎ ╎ ╎ 1 @FileWatching/…le.jl:67 mkpidlock(at::String, pid::Int32; stal… ╎ ╎ ╎ 1 @FileWatching/…le.jl:236 open_exclusive ╎ ╎ ╎ 1 @FileWatching/…e.jl:243 open_exclusive(path::String; mode::U… ╎ ╎ ╎ 1 @FileWatching/…e.jl:216 tryopen_exclusive(path::String, mod… 1╎ ╎ ╎ ╎ 1 @Base/…lesystem.jl:185 open(path::String, flags::UInt16, m… ╎ ╎ 2 @FileWatching/…ile.jl:94 mkpidlock(f::Base.Precompilation.var"#_… ╎ ╎ ╎ 2 @Base/…ompilation.jl:1019 #_precompilepkgs##36 ╎ ╎ ╎ 2 @Base/…ng/logging.jl:651 with_logger ╎ ╎ ╎ 2 @Base/…ng/logging.jl:540 with_logstate(f::Base.Precompilation… ╎ ╎ ╎ 2 @Base/…mpilation.jl:1025 (::Base.Precompilation.var"#_precom… ╎ ╎ ╎ 2 @Base/loading.jl:3237 compilecache ╎ ╎ ╎ ╎ 1 @Base/loading.jl:3264 compilecache(pkg::Base.PkgId, path::… ╎ ╎ ╎ ╎ 1 @Base/file.jl:749 mktemp 1╎ ╎ ╎ ╎ 1 @Base/file.jl:751 mktemp(parent::String; cleanup::Bool) ╎ ╎ ╎ ╎ 1 @Base/loading.jl:3279 compilecache(pkg::Base.PkgId, path::… ╎ ╎ ╎ ╎ 1 @Base/loading.jl:3110 create_expr_cache(pkg::Base.PkgId, … ╎ ╎ ╎ ╎ 1 @Base/file.jl:281 rm ╎ ╎ ╎ ╎ 1 @Base/file.jl:285 rm(path::String; force::Bool, recursi… 1╎ ╎ ╎ ╎ 1 @Base/file.jl:1193 unlink(p::String) Task 0x0000709a879bd3c0 Total snapshots: 7. Utilization: 100% ╎7 @Base/precompilation.jl:1018 (::Base.Precompilation.var"#_precompilepkgs##… ╎ 7 @Base/timing.jl:461 macro expansion ╎ 7 @Base/precompilation.jl:1216 precompile_pkgs_maybe_cachefile_lock(f::Bas… ╎ 7 @Base/reflection.jl:1327 invokelatest_gr ╎ 7 @Base/reflection.jl:1335 #invokelatest_gr#234 ╎ 7 @FileWatching/…dfile.jl:113 kwcall(::@NamedTuple{stale_age::Int64}, :… ╎ ╎ 7 @FileWatching/…file.jl:115 trymkpidlock(::Function, ::Vararg{Any}; k… ╎ ╎ 7 @FileWatching/…file.jl:89 kwcall(::@NamedTuple{stale_age::Int64, wa… ╎ ╎ 7 @FileWatching/…file.jl:89 #mkpidlock#7 ╎ ╎ 7 @FileWatching/…file.jl:91 kwcall(::@NamedTuple{stale_age::Int64, … ╎ ╎ 5 @FileWatching/…ile.jl:94 mkpidlock(f::Base.Precompilation.var"#_… ╎ ╎ ╎ 5 @Base/…ompilation.jl:1019 #_precompilepkgs##36 ╎ ╎ ╎ 5 @Base/…ng/logging.jl:651 with_logger ╎ ╎ ╎ 5 @Base/…ng/logging.jl:540 with_logstate(f::Base.Precompilation… ╎ ╎ ╎ 5 @Base/…mpilation.jl:1025 (::Base.Precompilation.var"#_precom… ╎ ╎ ╎ 5 @Base/loading.jl:3237 compilecache ╎ ╎ ╎ ╎ 2 @Base/loading.jl:3316 compilecache(pkg::Base.PkgId, path::… ╎ ╎ ╎ ╎ 2 @Base/file.jl:997 readdir ╎ ╎ ╎ ╎ 2 @Base/file.jl:997 #readdir#23 ╎ ╎ ╎ ╎ 2 @Base/file.jl:1068 _readdir 1╎ ╎ ╎ ╎ 2 @Base/file.jl:1073 _readdir(dir::String; return_object… ╎ ╎ ╎ ╎ 2 @Base/loading.jl:3346 compilecache(pkg::Base.PkgId, path::… ╎ ╎ ╎ ╎ 2 @Base/file.jl:452 mv ╎ ╎ ╎ ╎ 2 @Base/file.jl:454 #mv#11 ╎ ╎ ╎ ╎ 1 @Base/file.jl:462 _mv_replace(src::String, dst::String) 1╎ ╎ ╎ ╎ 1 @Base/stat.jl:377 ispath(path::String) ╎ ╎ ╎ ╎ 1 @Base/file.jl:473 _mv_replace(src::String, dst::String) 1╎ ╎ ╎ ╎ 1 @Base/file.jl:1225 rename(oldpath::String, newpath::St… ╎ ╎ ╎ ╎ 1 @Base/loading.jl:3350 compilecache(pkg::Base.PkgId, path::… ╎ ╎ ╎ ╎ 1 @Base/file.jl:281 rm ╎ ╎ ╎ ╎ 1 @Base/file.jl:283 rm(path::String; force::Bool, recursiv… ╎ ╎ ╎ ╎ 1 @Base/stat.jl:590 islink 1╎ ╎ ╎ ╎ 1 @Base/stat.jl:192 lstat(path::String) ╎ ╎ 2 @FileWatching/…ile.jl:96 mkpidlock(f::Base.Precompilation.var"#_… ╎ ╎ ╎ 1 @FileWatching/…le.jl:366 close(lock::FileWatching.Pidfile.LockM… ╎ ╎ ╎ 1 @FileWatching/…le.jl:336 tryrmopenfile(path::String) ╎ ╎ ╎ 1 @Base/file.jl:281 rm ╎ ╎ ╎ 1 @Base/file.jl:285 rm(path::String; force::Bool, recursive::B… 1╎ ╎ ╎ 1 @Base/file.jl:1193 unlink(p::String) ╎ ╎ ╎ 1 @FileWatching/…le.jl:368 close(lock::FileWatching.Pidfile.LockM… 1╎ ╎ ╎ 1 @Base/filesystem.jl:208 close ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_72434.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4060 [inlined] ijl_apply_generic at /source/src/gf.c:4257 jl_apply at /source/src/julia.h:2262 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007838230481f0 Total snapshots: 117. Utilization: 0% ╎117 @Base/task.jl:1137 wait_forever() 116╎ 117 @Base/task.jl:1200 wait() [7] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/precompile.jl:37 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_72434.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4060 [inlined] ijl_apply_generic at /source/src/gf.c:4257 jl_apply at /source/src/julia.h:2262 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 32326028 (Pool: 32325178; Big: 850); GC: 33 [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:152 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_72434.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4060 [inlined] ijl_apply_generic at /source/src/gf.c:4257 jl_apply at /source/src/julia.h:2262 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 13292006 (Pool: 13291495; Big: 511); GC: 11 PkgEval terminated after 2739.27s: test duration exceeded the time limit