Package evaluation of Stheno on Julia 1.13.0-DEV.1114 (7de5585024*) started at 2025-09-14T02:21:41.100 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.06s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.2 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.14.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.1 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.8s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 70.3s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_abec7o/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.33 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_abec7o/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.2 [a9b6321e] Atomix v1.1.2 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.26.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.1 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.14.0 [26cc04aa] FiniteDifferences v0.12.33 [f6369f11] ForwardDiff v1.2.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.5 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.38 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.2 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.37+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.0+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 8807.8 ms ✓ Documenter 1 dependency successfully precompiled in 9 seconds. 29 already precompiled. Precompiling packages... 3014.8 ms ✓ FiniteDifferences 1 dependency successfully precompiled in 3 seconds. 18 already precompiled. Precompiling packages... 12151.5 ms ✓ ChainRules 1618.3 ms ✓ StructArrays → StructArraysStaticArraysExt 2542.2 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 6635.9 ms ✓ ForwardDiff 14542.2 ms ✓ GPUArrays 2729.0 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 60489.0 ms ✓ Zygote 7 dependencies successfully precompiled in 102 seconds. 99 already precompiled. Precompiling packages... 12743.7 ms ✓ Zygote → ZygoteDistancesExt 1 dependency successfully precompiled in 14 seconds. 110 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#140` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 19m25.7s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1174s / 99.2% 28.8GiB / 99.5% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 747s 64.1% 747s 20.0GiB 69.9% 20.0GiB addition 1 417s 35.8% 417s 11.6GiB 40.3% 11.6GiB Standardised Tests (correlated sum) 1 234s 20.1% 234s 6.30GiB 21.9% 6.30GiB adj_ad 9 26.0s 2.2% 2.89s 0.99GiB 3.5% 113MiB adj_fd 9 9.11s 0.8% 1.01s 309MiB 1.1% 34.3MiB Standardised Tests (independent sum) 1 134s 11.5% 134s 4.96GiB 17.3% 4.96GiB adj_ad 9 24.9s 2.1% 2.77s 1.21GiB 4.2% 138MiB adj_fd 9 11.3s 1.0% 1.25s 293MiB 1.0% 32.6MiB Correlated GPs 1 46.2s 4.0% 46.2s 271MiB 0.9% 271MiB Consistency Tests 1 19.0s 1.6% 19.0s 117MiB 0.4% 117MiB Verify mean / kernel numerically 1 2.88s 0.2% 2.88s 39.3MiB 0.1% 39.3MiB Consistency Tests 1 1.54s 0.1% 1.54s 12.2MiB 0.0% 12.2MiB product 1 154s 13.2% 154s 3.88GiB 13.5% 3.88GiB multiply by function 1 90.3s 7.7% 90.3s 2.07GiB 7.2% 2.07GiB Diff Tests 1 51.9s 4.5% 51.9s 1.56GiB 5.5% 1.56GiB adj_ad 9 20.5s 1.8% 2.28s 861MiB 2.9% 95.6MiB adj_fd 9 6.18s 0.5% 686ms 112MiB 0.4% 12.5MiB Consistency Tests 1 5.83s 0.5% 5.83s 100MiB 0.3% 100MiB multiply by constant 1 63.5s 5.5% 63.5s 1.81GiB 6.3% 1.81GiB Diff Tests 1 47.5s 4.1% 47.5s 1.76GiB 6.1% 1.76GiB adj_ad 9 15.5s 1.3% 1.72s 787MiB 2.7% 87.4MiB adj_fd 9 10.0s 0.9% 1.11s 286MiB 1.0% 31.8MiB Consistency Tests 1 3.90s 0.3% 3.90s 17.3MiB 0.1% 17.3MiB GP mul errors 1 14.9ms 0.0% 14.9ms 40.5KiB 0.0% 40.5KiB compose 1 85.3s 7.3% 85.3s 2.37GiB 8.3% 2.37GiB general 1 52.3s 4.5% 52.3s 1.54GiB 5.4% 1.54GiB Diff Tests 1 46.3s 4.0% 46.3s 1.50GiB 5.2% 1.50GiB adj_ad 9 13.9s 1.2% 1.55s 726MiB 2.5% 80.7MiB adj_fd 9 5.62s 0.5% 624ms 114MiB 0.4% 12.7MiB Consistency Tests 1 4.50s 0.4% 4.50s 34.0MiB 0.1% 34.0MiB Stretch 1 26.9s 2.3% 26.9s 741MiB 2.5% 741MiB scalar stretch 1 26.1s 2.2% 26.1s 729MiB 2.5% 729MiB scalar input 1 25.3s 2.2% 25.3s 725MiB 2.5% 725MiB adj_fd 9 9.19s 0.8% 1.02s 275MiB 0.9% 30.5MiB adj_ad 9 3.22s 0.3% 358ms 139MiB 0.5% 15.4MiB vector input 1 849ms 0.1% 849ms 3.18MiB 0.0% 3.18MiB Vector stretch 1 645ms 0.1% 645ms 9.71MiB 0.0% 9.71MiB Matrix stretch 1 135ms 0.0% 135ms 2.96MiB 0.0% 2.96MiB Shift 1 3.21s 0.3% 3.21s 39.1MiB 0.1% 39.1MiB Shift{Vector{Float64}} 1 1.76s 0.2% 1.76s 14.1MiB 0.0% 14.1MiB Shift{Float64} 1 1.46s 0.1% 1.46s 25.1MiB 0.1% 25.1MiB Select 1 1.59s 0.1% 1.59s 31.7MiB 0.1% 31.7MiB evaluation 1 699ms 0.1% 699ms 20.1MiB 0.1% 20.1MiB idx isa Vector 1 516ms 0.0% 516ms 7.63MiB 0.0% 7.63MiB idx isa Integer 1 372ms 0.0% 372ms 3.87MiB 0.0% 3.87MiB Periodic 1 1.25s 0.1% 1.25s 32.8MiB 0.1% 32.8MiB cross 1 31.6s 2.7% 31.6s 1.42GiB 5.0% 1.42GiB block arrays 1 17.1s 1.5% 17.1s 801MiB 2.7% 801MiB Stheno._collect ∘ _mortar 1 14.2s 1.2% 14.2s 677MiB 2.3% 677MiB BlockMatrix 1 7.57s 0.6% 7.57s 384MiB 1.3% 384MiB adj_fd 1 976ms 0.1% 976ms 131MiB 0.4% 131MiB adj_ad 1 56.9ms 0.0% 56.9ms 2.35MiB 0.0% 2.35MiB BlockVector 1 6.59s 0.6% 6.59s 293MiB 1.0% 293MiB adj_fd 1 825ms 0.1% 825ms 12.2MiB 0.0% 12.2MiB adj_ad 1 215ms 0.0% 215ms 15.5MiB 0.1% 15.5MiB fdm stuff 1 2.89s 0.2% 2.89s 124MiB 0.4% 124MiB Correctness tests 1 8.62s 0.7% 8.62s 424MiB 1.4% 424MiB Standardised Tests 1 5.91s 0.5% 5.91s 231MiB 0.8% 231MiB gp 1 200s 17.1% 200s 4.48GiB 15.6% 4.48GiB adj_ad 2 21.5s 1.8% 10.8s 825MiB 2.8% 413MiB sparse gp 1 20.8s 1.8% 20.8s 391MiB 1.3% 391MiB SparseFiniteGP inference 1 15.2s 1.3% 15.2s 265MiB 0.9% 265MiB SparseFiniteGP methods 1 5.15s 0.4% 5.15s 121MiB 0.4% 121MiB SparseFiniteGP Constructors 1 393ms 0.0% 393ms 4.09MiB 0.0% 4.09MiB gp 1 18.2s 1.6% 18.2s 361MiB 1.2% 361MiB GP 1 17.9s 1.5% 17.9s 358MiB 1.2% 358MiB independent GPs 1 317ms 0.0% 317ms 2.58MiB 0.0% 2.58MiB wrapped AbstractGP 1 12.0ms 0.0% 12.0ms 287KiB 0.0% 287KiB adj_fd 2 2.98s 0.3% 1.49s 42.2MiB 0.1% 21.1MiB derived_gp 1 203μs 0.0% 203μs 1.92KiB 0.0% 1.92KiB gaussian_process_probabilistic_programme 1 138s 11.9% 138s 2.22GiB 7.7% 2.22GiB Zygote 1 27.3s 2.3% 27.3s 0.96GiB 3.4% 0.96GiB nested gppp 1 15.9s 1.4% 15.9s 83.9MiB 0.3% 83.9MiB External Consistency 1 14.4s 1.2% 14.4s 91.9MiB 0.3% 91.9MiB split 1 672ms 0.1% 672ms 11.5MiB 0.0% 11.5MiB gppp macro 1 54.9ms 0.0% 54.9ms 568KiB 0.0% 568KiB doctests 1 74.0s 6.4% 74.0s 1.69GiB 5.9% 1.69GiB BlockData 1 6.37s 0.5% 6.37s 250MiB 0.9% 250MiB vcat(::GPPPInput...) 1 1.60s 0.1% 1.60s 92.9MiB 0.3% 92.9MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1317.29s PkgEval succeeded after 1427.0s