Package evaluation of PreprocessMD on Julia 1.13.0-DEV.1114 (7de5585024*) started at 2025-09-13T23:49:21.219 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.27s ################################################################################ # Installation # Installing PreprocessMD... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [f785c8c6] + PreprocessMD v4.0.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [34da2185] + Compat v4.18.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.0 [864edb3b] + DataStructures v0.19.1 [e2d170a0] + DataValueInterfaces v1.0.0 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [b964fa9f] + LaTeXStrings v1.4.0 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [f785c8c6] + PreprocessMD v4.0.0 [08abe8d2] + PrettyTables v3.0.8 [189a3867] + Reexport v1.2.2 [91c51154] + SentinelArrays v1.4.8 [a2af1166] + SortingAlgorithms v1.2.2 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Installation completed after 3.28s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:76 Precompiling package dependencies... Precompilation completed after 293.27s ################################################################################ # Testing # Testing PreprocessMD Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_i1E2Jx/Project.toml` [336ed68f] + CSV v0.10.15 ⌅ [add582a8] + MLJ v0.19.5 [f785c8c6] + PreprocessMD v4.0.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_i1E2Jx/Manifest.toml` [da404889] + ARFFFiles v1.5.0 [66dad0bd] + AliasTables v1.1.3 [d1d4a3ce] + BitFlags v0.1.9 [336ed68f] + CSV v0.10.15 ⌅ [324d7699] + CategoricalArrays v0.10.8 ⌅ [af321ab8] + CategoricalDistributions v0.1.15 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [861a8166] + Combinatorics v1.0.3 [ed09eef8] + ComputationalResources v0.3.2 [f0e56b4a] + ConcurrentUtilities v2.5.0 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [792122b4] + EarlyStopping v0.3.0 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.14.0 [53c48c17] + FixedPointNumbers v0.8.5 [cd3eb016] + HTTP v1.10.17 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [b3c1a2ee] + IterationControl v0.5.4 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v0.21.4 [a5e1c1ea] + LatinHypercubeSampling v1.9.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 ⌅ [30fc2ffe] + LossFunctions v0.11.2 ⌅ [64a0f543] + MLFlowClient v0.4.7 ⌅ [add582a8] + MLJ v0.19.5 ⌅ [a7f614a8] + MLJBase v0.21.14 ⌅ [50ed68f4] + MLJEnsembles v0.3.3 ⌅ [7b7b8358] + MLJFlow v0.1.1 ⌅ [614be32b] + MLJIteration v0.5.1 [e80e1ace] + MLJModelInterface v1.12.0 ⌅ [d491faf4] + MLJModels v0.16.17 ⌅ [03970b2e] + MLJTuning v0.7.4 [739be429] + MbedTLS v1.1.9 [8b6db2d4] + OpenML v0.3.2 [4d8831e6] + OpenSSL v1.5.0 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [f785c8c6] + PreprocessMD v4.0.0 [54e16d92] + PrettyPrinting v0.4.2 ⌅ [08abe8d2] ↓ PrettyTables v3.0.8 ⇒ v2.4.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [321657f4] + ScientificTypes v3.1.1 [30f210dd] + ScientificTypesBase v3.0.0 [6c6a2e73] + Scratch v1.3.0 [605ecd9f] + ShowCases v0.1.0 [777ac1f9] + SimpleBufferStream v1.2.0 [276daf66] + SpecialFunctions v2.5.1 [860ef19b] + StableRNGs v1.0.3 [64bff920] + StatisticalTraits v3.5.0 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [c8ffd9c3] + MbedTLS_jll v2.28.6+2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [56ddb016] + Logging v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [4607b0f0] + SuiteSparse [a4e569a6] + Tar v1.10.0 [8dfed614] ~ Test ⇒ v1.11.0 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] + nghttp2_jll v1.67.0+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_i1E2Jx/Project.toml` [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.8.0 ⌅ [add582a8] MLJ v0.19.5 [f785c8c6] PreprocessMD v4.0.0 [ade2ca70] Dates v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_i1E2Jx/Manifest.toml` [da404889] ARFFFiles v1.5.0 [66dad0bd] AliasTables v1.1.3 [d1d4a3ce] BitFlags v0.1.9 [336ed68f] CSV v0.10.15 ⌅ [324d7699] CategoricalArrays v0.10.8 ⌅ [af321ab8] CategoricalDistributions v0.1.15 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [861a8166] Combinatorics v1.0.3 [34da2185] Compat v4.18.0 [ed09eef8] ComputationalResources v0.3.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.0 [864edb3b] DataStructures v0.19.1 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [792122b4] EarlyStopping v0.3.0 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.14.0 [53c48c17] FixedPointNumbers v0.8.5 [cd3eb016] HTTP v1.10.17 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [b3c1a2ee] IterationControl v0.5.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [a5e1c1ea] LatinHypercubeSampling v1.9.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 ⌅ [30fc2ffe] LossFunctions v0.11.2 ⌅ [64a0f543] MLFlowClient v0.4.7 ⌅ [add582a8] MLJ v0.19.5 ⌅ [a7f614a8] MLJBase v0.21.14 ⌅ [50ed68f4] MLJEnsembles v0.3.3 ⌅ [7b7b8358] MLJFlow v0.1.1 ⌅ [614be32b] MLJIteration v0.5.1 [e80e1ace] MLJModelInterface v1.12.0 ⌅ [d491faf4] MLJModels v0.16.17 ⌅ [03970b2e] MLJTuning v0.7.4 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [8b6db2d4] OpenML v0.3.2 [4d8831e6] OpenSSL v1.5.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [f785c8c6] PreprocessMD v4.0.0 [54e16d92] PrettyPrinting v0.4.2 ⌅ [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [321657f4] ScientificTypes v3.1.1 [30f210dd] ScientificTypesBase v3.0.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.8 [605ecd9f] ShowCases v0.1.0 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.5.1 [860ef19b] StableRNGs v1.0.3 [64bff920] StatisticalTraits v3.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [c8ffd9c3] MbedTLS_jll v2.28.6+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.0+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 10916.5 ms ✓ MLJIteration 16118.4 ms ✓ MLJFlow 15995.8 ms ✓ MLJTuning 11062.7 ms ✓ MLJEnsembles Info Given MLJ was explicitly requested, output will be shown live  WARNING: Method definition kron(FillArrays.RectDiagonal{T, V, Axes} where Axes<:Tuple{Base.AbstractUnitRange{T} where T, Base.AbstractUnitRange{T} where T} where V<:(FillArrays.AbstractFill{T, 1, Axes} where Axes) where T, FillArrays.RectDiagonal{T, V, Axes} where Axes<:Tuple{Base.AbstractUnitRange{T} where T, Base.AbstractUnitRange{T} where T} where V<:(FillArrays.AbstractFill{T, 1, Axes} where Axes) where T) in module FillArraysSparseArraysExt at deprecated.jl:213 overwritten in module FillArraysSparseArraysExt on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 49488.8 ms ? MLJ 4 dependencies successfully precompiled in 105 seconds. 135 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 1 dependency had output during precompilation: ┌ MLJ │ [Output was shown above] └ Precompiling packages... 12266.2 ms ✓ PreprocessMD 1 dependency successfully precompiled in 13 seconds. 34 already precompiled. Precompiling packages... 22038.2 ms ✓ PreprocessMD → PreprocessMDMLJExt 1 dependency successfully precompiled in 24 seconds. 147 already precompiled. Precompiling packages... 2725.8 ms ✓ WeakRefStrings 30031.9 ms ✓ CSV 2 dependencies successfully precompiled in 33 seconds. 28 already precompiled. Test Summary: | Pass Total Time PreprocessMD | 39 39 1m35.7s No weakdeps tests | 2 2 4.7s Log messages | 5 5 1m10.8s Intended exceptions | 14 14 12.0s Default options | 6 6 3.1s Simple examples | 12 12 5.0s Testing PreprocessMD tests passed Testing completed after 412.37s PkgEval succeeded after 768.3s