Package evaluation of OnlinePCA on Julia 1.13.0-DEV.1114 (7de5585024*) started at 2025-09-14T08:28:50.926 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.54s ################################################################################ # Installation # Installing OnlinePCA... Resolving package versions... Installed WebIO ──── v0.8.21 Installed PlotlyJS ─ v0.18.17 Updating `~/.julia/environments/v1.13/Project.toml` [975b03d1] + OnlinePCA v0.3.10 Updating `~/.julia/environments/v1.13/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [c7e460c6] + ArgParse v1.2.0 [bf4720bc] + AssetRegistry v0.1.0 [d1d4a3ce] + BitFlags v0.1.9 [ad839575] + Blink v0.12.9 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.6 [35d6a980] + ColorSchemes v3.30.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] + Compat v4.18.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.14.0 [53c48c17] + FixedPointNumbers v0.8.5 [de31a74c] + FunctionalCollections v0.5.0 [38e38edf] + GLM v1.9.0 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.17 [9fb69e20] + Hiccup v0.2.2 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [97c1335a] + JSExpr v0.5.4 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [50d2b5c4] + Lazy v0.15.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [4d4711f2] + MatrixMarket v0.5.2 [739be429] + MbedTLS v1.1.9 [e1d29d7a] + Missings v1.2.0 [ffc61752] + Mustache v1.0.21 [a975b10e] + Mux v1.0.2 [510215fc] + Observables v0.5.5 [975b03d1] + OnlinePCA v0.3.10 [4d8831e6] + OpenSSL v1.5.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [a03496cd] + PlotlyBase v0.8.21 [f0f68f2c] + PlotlyJS v0.18.17 [f2990250] + PlotlyKaleido v2.3.0 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.0.8 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [3eaba693] + StatsModels v0.7.6 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [b718987f] + TextWrap v1.0.2 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [76eceee3] + WorkerUtilities v1.6.1 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [f7e6163d] + Kaleido_jll v0.2.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [c8ffd9c3] + MbedTLS_jll v2.28.6+2 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.8+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.4+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.67.0+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building WebIO ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0eef0765186f7452e52236fa42ca8c9b3c11c6e3/build.log` Building PlotlyJS → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/287e092914da6c91f002aafcf82a2ec065bf94a3/build.log` Installation completed after 26.32s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 508.82s ################################################################################ # Testing # Testing OnlinePCA Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_Y5jhRd/Project.toml` [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.120 [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.14.0 [975b03d1] + OnlinePCA v0.3.10 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [37e2e46d] ~ LinearAlgebra ⇒ v1.13.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.13.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_Y5jhRd/Manifest.toml` [bf4720bc] + AssetRegistry v0.1.0 [d1d4a3ce] + BitFlags v0.1.9 [ad839575] + Blink v0.12.9 [336ed68f] + CSV v0.10.15 [944b1d66] ↑ CodecZlib v0.7.6 ⇒ v0.7.8 [6b39b394] + CodecZstd v0.8.6 [35d6a980] + ColorSchemes v3.30.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] ↑ Compat v4.16.0 ⇒ v4.18.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [a93c6f00] + DataFrames v1.8.0 ⌅ [864edb3b] ↑ DataStructures v0.18.20 ⇒ v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.120 [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.14.0 [53c48c17] + FixedPointNumbers v0.8.5 [de31a74c] + FunctionalCollections v0.5.0 [38e38edf] + GLM v1.9.0 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.17 [9fb69e20] + Hiccup v0.2.2 [34004b35] ↑ HypergeometricFunctions v0.3.24 ⇒ v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] ↑ JLLWrappers v1.5.0 ⇒ v1.7.1 [97c1335a] + JSExpr v0.5.4 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [50d2b5c4] + Lazy v0.15.1 [2ab3a3ac] ↑ LogExpFunctions v0.3.28 ⇒ v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.9 [ffc61752] + Mustache v1.0.21 [a975b10e] + Mux v1.0.2 [510215fc] + Observables v0.5.5 [975b03d1] + OnlinePCA v0.3.10 [4d8831e6] + OpenSSL v1.5.0 [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.1 [90014a1f] ↑ PDMats v0.11.31 ⇒ v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [a03496cd] + PlotlyBase v0.8.21 [f0f68f2c] + PlotlyJS v0.18.17 [f2990250] + PlotlyKaleido v2.3.0 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] ↑ Preferences v1.4.3 ⇒ v1.5.0 [08abe8d2] + PrettyTables v3.0.8 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] ↑ PtrArrays v1.2.0 ⇒ v1.3.0 [1fd47b50] ↑ QuadGK v2.10.1 ⇒ v2.11.2 [ae029012] + Requires v1.3.1 [79098fc4] ↑ Rmath v0.7.1 ⇒ v0.8.0 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] ↑ SortingAlgorithms v1.2.1 ⇒ v1.2.2 [276daf66] ↑ SpecialFunctions v2.4.0 ⇒ v2.5.1 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [82ae8749] ↑ StatsAPI v1.7.0 ⇒ v1.7.1 [2913bbd2] ↑ StatsBase v0.34.3 ⇒ v0.34.6 [4c63d2b9] ↑ StatsFuns v1.3.1 ⇒ v1.5.0 [3eaba693] + StatsModels v0.7.6 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] ↑ TranscodingStreams v0.11.2 ⇒ v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [76eceee3] + WorkerUtilities v1.6.1 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [f7e6163d] + Kaleido_jll v0.2.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [c8ffd9c3] ↑ MbedTLS_jll v2.28.2+1 ⇒ v2.28.6+2 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0 [f50d1b31] ↑ Rmath_jll v0.4.3+0 ⇒ v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.8+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.4+0 [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] ↑ Downloads v1.6.0 ⇒ v1.7.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [76f85450] ~ LibGit2 ⇒ v1.11.0 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.13.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] ~ Mmap ⇒ v1.11.0 [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0 [44cfe95a] ↑ Pkg v1.10.0 ⇒ v1.13.0 [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] ~ REPL ⇒ v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [6462fe0b] ~ Sockets ⇒ v1.11.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.13.0 [f489334b] + StyledStrings v1.11.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] ↑ CompilerSupportLibraries_jll v1.1.1+0 ⇒ v1.3.0+1 [deac9b47] ↑ LibCURL_jll v8.4.0+0 ⇒ v8.16.0+0 [e37daf67] ↑ LibGit2_jll v1.6.4+0 ⇒ v1.9.1+0 [29816b5a] ↑ LibSSH2_jll v1.11.0+1 ⇒ v1.11.3+1 [14a3606d] ↑ MozillaCACerts_jll v2023.1.10 ⇒ v2025.9.9 [4536629a] ↑ OpenBLAS_jll v0.3.23+4 ⇒ v0.3.29+0 [05823500] ↑ OpenLibm_jll v0.8.1+2 ⇒ v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] ↑ SuiteSparse_jll v7.2.1+1 ⇒ v7.10.1+0 [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] ↑ libblastrampoline_jll v5.8.0+1 ⇒ v5.13.1+0 [8e850ede] ↑ nghttp2_jll v1.52.0+1 ⇒ v1.67.0+0 [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_Y5jhRd/Project.toml` [c7e460c6] ArgParse v1.2.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.120 [1a297f60] FillArrays v1.14.0 [4d4711f2] MatrixMarket v0.5.2 [975b03d1] OnlinePCA v0.3.10 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.13.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Y5jhRd/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [c7e460c6] ArgParse v1.2.0 [bf4720bc] AssetRegistry v0.1.0 [d1d4a3ce] BitFlags v0.1.9 [ad839575] Blink v0.12.9 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.6 [35d6a980] ColorSchemes v3.30.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [34da2185] Compat v4.18.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.14.0 [53c48c17] FixedPointNumbers v0.8.5 [de31a74c] FunctionalCollections v0.5.0 [38e38edf] GLM v1.9.0 [f67ccb44] HDF5 v0.17.2 [cd3eb016] HTTP v1.10.17 [9fb69e20] Hiccup v0.2.2 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [97c1335a] JSExpr v0.5.4 [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [50d2b5c4] Lazy v0.15.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [4d4711f2] MatrixMarket v0.5.2 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [ffc61752] Mustache v1.0.21 [a975b10e] Mux v1.0.2 [510215fc] Observables v0.5.5 [975b03d1] OnlinePCA v0.3.10 [4d8831e6] OpenSSL v1.5.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [a03496cd] PlotlyBase v0.8.21 [f0f68f2c] PlotlyJS v0.18.17 [f2990250] PlotlyKaleido v2.3.0 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.0.8 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [91c51154] SentinelArrays v1.4.8 [1277b4bf] ShiftedArrays v2.0.0 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.5.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [3eaba693] StatsModels v0.7.6 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [b718987f] TextWrap v1.0.2 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [ea10d353] WeakRefStrings v1.4.2 [0f1e0344] WebIO v0.8.21 [104b5d7c] WebSockets v1.6.0 [cc8bc4a8] Widgets v0.6.7 [76eceee3] WorkerUtilities v1.6.1 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.2+0 [f7e6163d] Kaleido_jll v0.2.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [7cb0a576] MPICH_jll v4.3.1+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [c8ffd9c3] MbedTLS_jll v2.28.6+2 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.8+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.8+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] libaec_jll v1.1.4+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.0+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 9216.8 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 12 seconds. 49 already precompiled. /tmp/jl_lVgTLT Running all tests... ####### Binarization of CSV (Julia API) ####### 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 ####### Binarization of CSV (Command line) ####### Precompiling packages... 1976.2 ms ✓ TextWrap 7207.4 ms ✓ Lazy 969.6 ms ✓ ShiftedArrays 1138.7 ms ✓ WorkerUtilities 2207.5 ms ✓ CodecZstd 1081.6 ms ✓ DelimitedFiles 1489.4 ms ✓ MatrixMarket 1953.3 ms ✓ Widgets 1126.6 ms ✓ Pidfile 1358.2 ms ✓ FunctionalCollections 1484.0 ms ✓ Hiccup 1480.8 ms ✓ Mustache 3077.6 ms ✓ QuadGK 216129.4 ms ✓ DataFrames 1091.6 ms ✓ InlineStrings → ParsersExt 1557.3 ms ✓ Kaleido_jll 4735.4 ms ✓ WebSockets 2256.3 ms ✓ ArgParse 5435.4 ms ✓ StatsModels 12765.8 ms ✓ PlotlyBase 1536.7 ms ✓ AssetRegistry 10918.3 ms ✓ Distributions 3060.8 ms ✓ WeakRefStrings 1610.1 ms ✓ PlotlyKaleido 15782.0 ms ✓ PlotlyBase → DataFramesExt 9425.4 ms ✓ WebIO 8530.3 ms ✓ Mux 7022.7 ms ✓ GLM 5521.8 ms ✓ Distributions → DistributionsTestExt 10009.2 ms ✓ PlotlyBase → DistributionsExt 72099.4 ms ✓ CSV 6635.2 ms ✓ JSExpr 11542.0 ms ✓ Blink 19393.5 ms ✓ PlotlyJS 10348.4 ms ✓ PlotlyJS → CSVExt 18105.9 ms ✓ PlotlyJS → DataFramesExt 20275.6 ms ✓ OnlinePCA 37 dependencies successfully precompiled in 506 seconds. 126 already precompiled. 2 dependencies had output during precompilation: ┌ WebSockets │ WARNING: Imported binding Logging.termlength was undeclared at import time during import to WebSockets. │ WARNING: Imported binding Logging.showvalue was undeclared at import time during import to WebSockets. └ ┌ PlotlyBase → DistributionsExt │ WARNING: Constructor for type "Plot" was extended in `DistributionsExt` without explicit qualification or import. │ NOTE: Assumed "Plot" refers to `PlotlyBase.Plot`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Plot end`. │ Hint: To silence the warning, qualify `Plot` as `PlotlyBase.Plot` in the method signature or explicitly `import PlotlyBase: Plot`. └ Parsed args: binfile => /tmp/jl_lVgTLT/Data.zst csvfile => /tmp/jl_lVgTLT/Data.csv 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 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Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Command line) ####### Parsed args: binfile => /tmp/jl_lVgTLT/Data.zst outdir => /tmp/jl_YrVJHX pseudocount => 1.0 mode => dense 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Julia API) ####### 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Command line) ####### Parsed args: binfile => /tmp/jl_lVgTLT/Data.mtx.zst outdir => /tmp/jl_Xa54EP pseudocount => 1.0 mode => sparse_mm 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### HVG (Julia API) ####### Highly Variable Genes are calculated... ####### HVG (Command line) ####### Parsed args: rowvarlist => /tmp/jl_YrVJHX/Feature_Vars.csv binfile => /tmp/jl_lVgTLT/Data.zst outdir => /tmp/jl_YrVJHX rowcv2list => /tmp/jl_YrVJHX/Feature_CV2s.csv rowmeanlist => /tmp/jl_YrVJHX/Feature_Means.csv Highly Variable Genes are calculated... ####### Filtering (Julia API) ####### ####### Filtering (Command line) ####### Parsed args: input => /tmp/jl_lVgTLT/Data.zst samplelist => /tmp/jl_YrVJHX/Sample_NoCounts.csv outdir => /tmp/jl_YrVJHX thr2 => 10 direct1 => + direct2 => + featurelist => /tmp/jl_YrVJHX/Feature_Means.csv thr1 => 10 Parsed args: input => /tmp/jl_lVgTLT/Data.zst samplelist => outdir => /tmp/jl_YrVJHX thr2 => 10 direct1 => + direct2 => + featurelist => /tmp/jl_YrVJHX/Feature_Means.csv thr1 => 10 Parsed args: input => /tmp/jl_lVgTLT/Data.zst samplelist => /tmp/jl_YrVJHX/Sample_NoCounts.csv outdir => /tmp/jl_YrVJHX thr2 => 10 direct1 => + direct2 => + featurelist => thr1 => 10 ####### GD (Julia API) ####### ####### GD (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => "/tmp/jl_YrVJHX/Eigen_vectors.csv" scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => "/tmp/jl_YrVJHX/Loadings.csv" Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing ####### Oja (Julia API) ####### Progress: 1%|▎ | ETA: 0:02:42 Progress: 1%|▍ | ETA: 0:03:07 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:02:40 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:02:48 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:01:28 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 ####### Oja (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:06:09 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:06:44 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:10:32 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:07:46 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 ####### SGD (Julia API) ####### Progress: 1%|▎ | ETA: 0:02:58 Progress: 1%|▍ | ETA: 0:03:47 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:04:00 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:04:21 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:03:14 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### SGD (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:06:36 Progress: 1%|▍ | ETA: 0:05:27 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:07:08 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:09:10 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:08:26 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 ####### CCIPCA (Julia API) ####### Progress: 1%|▎ | ETA: 0:01:57 Progress: 1%|▍ | ETA: 0:02:22 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### CCIPCA (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing lower => 0 stepsize => "1.0e-15" dim => "3" rowvarlist => "" offsetStoch => 1.0f-15 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" upper => 1.0f38 numepoch => "1" initV => nothing Progress: 1%|▎ | ETA: 0:08:38 Progress: 100%|█████████████████████████████████████████| Time: 0:00:04 ####### RSGD (Julia API) ####### Progress: 1%|▎ | ETA: 0:16:05 Progress: 1%|▍ | ETA: 0:12:28 Progress: 100%|█████████████████████████████████████████| Time: 0:00:07 Progress: 1%|▎ | ETA: 0:04:00 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 Progress: 1%|▎ | ETA: 0:05:37 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:03:02 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### RSGD (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:12:09 Progress: 1%|▍ | ETA: 0:09:09 Progress: 100%|█████████████████████████████████████████| Time: 0:00:05 Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:13:08 Progress: 100%|█████████████████████████████████████████| Time: 0:00:05 Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:13:46 Progress: 100%|█████████████████████████████████████████| Time: 0:00:05 Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:14:52 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 ####### SVRG (Julia API) ####### Progress: 1%|▎ | ETA: 0:04:47 Progress: 1%|▍ | ETA: 0:05:29 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Progress: 1%|▎ | ETA: 0:06:08 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:09:09 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Progress: 1%|▎ | ETA: 0:06:59 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 ####### SVRG (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:15:48 Progress: 1%|▍ | ETA: 0:12:38 Progress: 100%|█████████████████████████████████████████| Time: 0:00:07 Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:15:55 Progress: 100%|█████████████████████████████████████████| Time: 0:00:06 Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:18:53 Progress: 100%|█████████████████████████████████████████| Time: 0:00:07 Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:18:30 Progress: 100%|█████████████████████████████████████████| Time: 0:00:07 ####### RSVRG (Julia API) ####### Progress: 1%|▎ | ETA: 0:05:14 Progress: 1%|▍ | ETA: 0:05:46 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Progress: 1%|▎ | ETA: 0:05:20 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 Progress: 1%|▎ | ETA: 0:08:26 Progress: 100%|█████████████████████████████████████████| Time: 0:00:03 Progress: 1%|▎ | ETA: 0:06:59 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 ####### RSVRG (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing scheduling => "robbins-monro" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:23:21 Progress: 1%|▍ | ETA: 0:17:39 Progress: 100%|█████████████████████████████████████████| Time: 0:00:10 Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing scheduling => "momentum" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:23:05 Progress: 100%|█████████████████████████████████████████| Time: 0:00:09 Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing scheduling => "nag" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:23:56 Progress: 100%|█████████████████████████████████████████| Time: 0:00:09 Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing scheduling => "adagrad" epsilon => 1.0f-8 stepsize => "1.0e-15" dim => "3" lower => 0 rowvarlist => "" offsetStoch => 1.0f-6 expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" numbatch => 100 rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" evalfreq => 5000 cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" g => 0.9f0 upper => 1.0f38 numepoch => "1" offsetFull => 1.0f-20 initV => nothing Progress: 1%|▎ | ETA: 0:24:04 Progress: 100%|█████████████████████████████████████████| Time: 0:00:09 ####### Orthogonal Iteration (Julia API) ####### Progress: 0%|▏ | ETA: 0:06:23 Progress: 100%|█████████████████████████████████████████| Time: 0:00:01 ####### Orthogonal Iteration (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing lower => 0 dim => "3" rowvarlist => "" expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" upper => 1.0f38 numepoch => "3" initV => nothing Progress: 0%|▏ | ETA: 0:21:37 Progress: 33%|█████████████▊ | ETA: 0:00:10 Progress: 100%|█████████████████████████████████████████| Time: 0:00:05 ####### Randomized Block Krylov Iteration (Julia API) ####### Progress: 14%|█████▊ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 Q' A Q' A' A svd(Q' A' A) Q*U ####### Randomized Block Krylov Iteration (Command line) ####### Parsed args: scale => "ftt" logdir => "/tmp/jl_YrVJHX" initW => nothing lower => 0 dim => "3" rowvarlist => "" expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" upper => 1.0f38 numepoch => "3" initV => nothing Progress: 0%|▏ | ETA: 0:21:17 Progress: 33%|█████████████▊ | ETA: 0:00:09 Progress: 100%|█████████████████████████████████████████| Time: 0:00:05 Q' A Q' A' A svd(Q' A' A) Q*U ####### ARNOLDI (Julia API) ####### Progress: 20%|████████▎ | ETA: 0:00:02 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 ####### ARNOLDI (Command line) ####### Parsed args: scale => "ftt" dim => "3" rowvarlist => "" expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" numepoch => "3" Progress: 67%|███████████████████████████▍ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 ####### LANCZOS (Julia API) ####### Progress: 20%|████████▎ | ETA: 0:00:00 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 ####### LANCZOS (Command line) ####### Parsed args: scale => "ftt" dim => "3" rowvarlist => "" expvar => 0.1f0 input => "/tmp/jl_lVgTLT/Data.zst" perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" numepoch => "3" Progress: 67%|███████████████████████████▍ | ETA: 0:00:01 Progress: 100%|█████████████████████████████████████████| Time: 0:00:02 ####### HALKO (Julia API) ####### Random Projection : Y = A Ω Progress: 1%|▎ | ETA: 0:00:59 Progress: 100%|█████████████████████████████████████████| Time: 0:00:00 QR factorization : Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) qr(A' Q) Subspace iterations (2/2) : Y = qr(A qr(A' Q)) Q = qr(Y) Calculation of small matrix : B = Q' A SVD with small matrix : svd(B) ####### HALKO (Command line) ####### ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 616 running 1 of 1 signal (10): User defined signal 1 unknown function (ip: 0x7d917643d781) at /lib/x86_64-linux-gnu/libc.so.6 unknown function (ip: 0x7d917643f60f) at /lib/x86_64-linux-gnu/libc.so.6 unknown function (ip: 0x7d9176461757) at /lib/x86_64-linux-gnu/libc.so.6 __to_xstring, char> at /usr/local/x86_64-linux-gnu/include/c++/9.1.0/ext/string_conversions.h:111 to_string at /usr/local/x86_64-linux-gnu/include/c++/9.1.0/bits/basic_string.h:6565 [inlined] emit_plt_thunk at /source/src/ccall.cpp:255 [inlined] emit_plt at /source/src/ccall.cpp:319 [inlined] emit_a_ccall at /source/src/ccall.cpp:2169 emit_ccall at /source/src/ccall.cpp:1972 emit_expr at /source/src/codegen.cpp:6362 emit_ssaval_assign at /source/src/codegen.cpp:5831 emit_stmtpos at /source/src/codegen.cpp:6138 emit_function at /source/src/codegen.cpp:9418 jl_emit_code at /source/src/codegen.cpp:9797 jl_emit_codeinst at /source/src/codegen.cpp:9868 jl_emit_codeinst_to_jit_impl at /source/src/jitlayers.cpp:817 add_codeinsts_to_jit! at ./../usr/share/julia/Compiler/src/typeinfer.jl:1562 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1569 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1577 jfptr_typeinf_ext_toplevel_84824.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 jl_apply at /source/src/julia.h:2382 [inlined] jl_type_infer at /source/src/gf.c:462 jl_compile_method_internal at /source/src/gf.c:3583 _jl_invoke at /source/src/gf.c:4053 [inlined] ijl_apply_generic at /source/src/gf.c:4258 jl_apply at /source/src/julia.h:2382 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) #= 324.4 ms =# precompile(Tuple{typeof(Base.push!), Base.Set{AbstractString}, String}) #= 0.0 ms =# precompile(Tuple{typeof(ArgParse.found_command), ArgParse.ParserState}) #= 0.0 ms =# precompile(Tuple{typeof(ArgParse.parse_item_wrapper), Type{Union{AbstractString, Number}}, AbstractString}) #= 0.0 ms =# precompile(Tuple{typeof(ArgParse.parse_item), Type{Union{AbstractString, Number}}, AbstractString}) #= 10.1 ms =# precompile(Tuple{typeof(Base.convert), Type{Union{AbstractString, Number}}, String}) #= 0.0 ms =# precompile(Tuple{typeof(ArgParse.parse_item_wrapper), Type{Union{Nothing, AbstractString}}, AbstractString}) #= 0.0 ms =# precompile(Tuple{typeof(ArgParse.parse_item), Type{Union{Nothing, AbstractString}}, AbstractString}) #= 10.0 ms =# precompile(Tuple{typeof(Base.convert), Type{Union{Nothing, AbstractString}}, String}) #= 51.6 ms =# precompile(Tuple{Base.var"#bind##0#bind##1"{Base.Channel{Any}, Task}}) #= 0.0 ms =# precompile(Tuple{typeof(ArgParse.test_required_args), ArgParse.ArgParseSettings, Base.Set{AbstractString}}) #= 11.8 ms =# precompile(Tuple{Type{Base.Iterators.Filter{F, I} where I where F}, ArgParse.var"#test_required_args##2#test_required_args##3", Array{ArgParse.ArgParseGroup, 1}}) #= 12.6 ms =# precompile(Tuple{Type{Base.Generator{I, F} where F where I}, ArgParse.var"#test_required_args##0#test_required_args##1", Base.Iterators.Filter{ArgParse.var"#test_required_args##2#test_required_args##3", Array{ArgParse.ArgParseGroup, 1}}}) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== Parsed args: scale => "ftt"┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007d915c5fc010 Total snapshots: 107. Utilization: 100% ╎94 @Base/client.jl:563 _start() ╎ 94 @Base/client.jl:330 exec_options(opts::Base.JLOptions) ╎ 94 @Base/Base.jl:308 include(mod::Module, _path::String) ╎ 94 @Base/loading.jl:2978 _include(mapexpr::Function, mod::Module, _path… ╎ 94 @Base/loading.jl:2918 include_string(mapexpr::typeof(identity), mod… ╎ 94 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 94 @OnlinePCA/bin/halko:9 main() 63╎ ╎ 94 @OnlinePCA/…/Utils.jl:457 parse_commandline(pca::OnlinePCA.HALKO) ╎ ╎ 30 @Compiler/…einfer.jl:1577 typeinf_ext_toplevel(mi::Core.MethodI… ╎ ╎ 27 @Compiler/…einfer.jl:1568 typeinf_ext_toplevel ╎ ╎ 27 @Compiler/…infer.jl:1385 typeinf_ext(interp::Compiler.NativeI… ╎ ╎ ╎ 2 @Compiler/…ation.jl:4512 typeinf(interp::Compiler.NativeInte… ╎ ╎ ╎ 2 @Compiler/…tate.jl:1206 doworkloop(interp::Compiler.NativeI… ╎ ╎ ╎ 1 @Compiler/…tion.jl:178 (::Compiler.var"#handle1#abstract_c… ╎ ╎ ╎ 1 @Compiler/…tion.jl:868 abstract_call_method_with_const_ar… ╎ ╎ ╎ 1 @Compiler/…tion.jl:898 abstract_call_method_with_const_a… ╎ ╎ ╎ ╎ 1 @Compiler/…ion.jl:1319 const_prop_call(interp::Compiler… 1╎ ╎ ╎ ╎ 1 @Compiler/…ult.jl:45 pick_const_args!(𝕃::Compiler.Infe… 1╎ ╎ ╎ 1 @Compiler/…tion.jl:261 (::Compiler.var"#infercalls#abstrac… ╎ ╎ ╎ 13 @Compiler/…ation.jl:4521 typeinf(interp::Compiler.NativeInte… ╎ ╎ ╎ 12 @Compiler/…tion.jl:4363 typeinf_local(interp::Compiler.Nati… ╎ ╎ ╎ 12 @Compiler/…tion.jl:3814 abstract_eval_basic_statement ╎ ╎ ╎ 12 @Compiler/…tion.jl:3857 abstract_eval_basic_statement ╎ ╎ ╎ 12 @Compiler/…ion.jl:3430 abstract_eval_statement_expr(inte… ╎ ╎ ╎ ╎ 12 @Compiler/…ion.jl:3074 abstract_eval_call ╎ ╎ ╎ ╎ 12 @Compiler/…on.jl:3056 abstract_call(interp::Compiler.N… ╎ ╎ ╎ ╎ 12 @Compiler/…on.jl:2896 abstract_call ╎ ╎ ╎ ╎ 12 @Compiler/…on.jl:2903 abstract_call(interp::Compiler… ╎ ╎ ╎ ╎ 1 @Compiler/…n.jl:2683 abstract_call_known(interp::Co… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…n.jl:1983 abstract_call_builtin(interp:… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:2852 builtin_tfunction(interp::Com… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:1296 setfield!_tfunc(𝕃::Compiler.… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:1117 _getfield_tfunc ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…jl:1124 _getfield_tfunc ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…jl:1147 _getfield_tfunc(𝕃::Compile… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1169 _getfield_tfunc(𝕃::Compile… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1250 _getfield_tfunc(𝕃::Compil… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:308 tmerge ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:0 tmerge(lattice::Compiler.I… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:536 tmerge(lattice::Compile… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:679 tmerge(lattice::Compil… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:413 tmerge_fast_path ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:366 issimplertype(𝕃::Com… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:315 issimpleenoughtype(… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:262 unioncomplexity ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:272 _unioncomplexity(… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:262 unioncomplexity 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:274 _unioncomplexit… ╎ ╎ ╎ ╎ 11 @Compiler/…n.jl:2796 abstract_call_known(interp::Co… ╎ ╎ ╎ ╎ ╎ 8 @Compiler/…n.jl:120 abstract_call_gf_by_type(inter… ╎ ╎ ╎ ╎ ╎ 8 @Compiler/…n.jl:342 find_method_matches 1╎ ╎ ╎ ╎ ╎ 8 @Compiler/….jl:348 #find_method_matches#134 ╎ ╎ ╎ ╎ ╎ 7 @Compiler/….jl:386 find_simple_method_matches(i… ╎ ╎ ╎ ╎ ╎ 7 @Compiler/….jl:102 findall ╎ ╎ ╎ ╎ ╎ ╎ 5 @Compiler/…jl:105 findall(sig::Type, table::C… ╎ ╎ ╎ ╎ ╎ ╎ 5 @Compiler/…jl:70 findall ╎ ╎ ╎ ╎ ╎ ╎ 5 @Compiler/…jl:70 #findall#5 ╎ ╎ ╎ ╎ ╎ ╎ 5 @Compiler/…l:97 _findall 5╎ ╎ ╎ ╎ ╎ ╎ 5 @Base/…ls.jl:1595 _methods_by_ftype ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…jl:111 findall(sig::Type, table::C… ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…jl:70 findall ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…jl:70 #findall#5 ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:97 _findall 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ls.jl:1595 _methods_by_ftype ╎ ╎ ╎ ╎ ╎ 3 @Compiler/…n.jl:338 abstract_call_gf_by_type(inter… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…n.jl:167 (::Compiler.var"#infercalls#a… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:735 abstract_call_method(interp::… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:1036 typeinf_edge(interp::Compil… ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:1769 specialize_method 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…als.jl:1782 #specialize_method#8 ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…n.jl:252 (::Compiler.var"#infercalls#a… ╎ ╎ ╎ ╎ ╎ 2 @Compiler/….jl:178 (::Compiler.var"#handle1#abst… ╎ ╎ ╎ ╎ ╎ 2 @Compiler/….jl:868 abstract_call_method_with_co… ╎ ╎ ╎ ╎ ╎ 2 @Compiler/….jl:898 abstract_call_method_with_c… ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…jl:1348 const_prop_call(interp::Co… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:4521 typeinf(interp::Compiler.N… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:4363 typeinf_local(interp::Com… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:3814 abstract_eval_basic_stat… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:3857 abstract_eval_basic_sta… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:3430 abstract_eval_statemen… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:3074 abstract_eval_call ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:3056 abstract_call(interp… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:2896 abstract_call ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:2903 abstract_call(inte… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:2796 abstract_call_kno… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:338 abstract_call_gf_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:252 (::Compiler.var"… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:178 (::Compiler.var… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:868 abstract_call_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 1 @Compiler/…l:898 abstract_call_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +2 1 @Compiler/…l:1348 const_prop_ca… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +3 1 @Compiler/…l:4521 typeinf(inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +4 1 @Compiler/…l:4363 typeinf_local… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +5 1 @Compiler/…l:3814 abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +6 1 @Compiler/…l:3841 abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +7 1 @Compiler/…l:2989 abstract_eval… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 1 @Compiler/…l:3752 abstract_eval… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 1 @Compiler/…l:990 update_valid_a… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:4528 typeinf(interp::Compiler.N… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:232 finish_nocycle(::Compiler.… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1032 optimize(interp::Compile… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1059 run_passes_ipo_safe ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1081 run_passes_ipo_safe(ci… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:30 check_op(ir::Compiler.I… ╎ ╎ ╎ 1 @Compiler/…tion.jl:4403 typeinf_local(interp::Compiler.Nati… 1╎ ╎ ╎ 1 @Base/essentials.jl:0 record_ssa_assign!(𝕃ᵢ::Compiler.Infe… ╎ ╎ ╎ 12 @Compiler/…ation.jl:4528 typeinf(interp::Compiler.NativeInte… 1╎ ╎ ╎ 1 @Compiler/…infer.jl:229 finish_nocycle(::Compiler.NativeInt… ╎ ╎ ╎ 9 @Compiler/…infer.jl:232 finish_nocycle(::Compiler.NativeInt… ╎ ╎ ╎ 8 @Compiler/…mize.jl:1032 optimize(interp::Compiler.NativeIn… ╎ ╎ ╎ 8 @Compiler/…mize.jl:1059 run_passes_ipo_safe ╎ ╎ ╎ 8 @Compiler/…ize.jl:1046 run_passes_ipo_safe(ci::Core.Code… ╎ ╎ ╎ ╎ 2 @Compiler/…ize.jl:1344 slot2reg ╎ ╎ ╎ ╎ 1 @Compiler/…ssa.jl:858 construct_ssa!(ci::Core.CodeInfo… ╎ ╎ ╎ ╎ 1 @Compiler/…/ir.jl:44 block_for_inst ╎ ╎ ╎ ╎ 1 @Compiler/…ir.jl:37 block_for_inst ╎ ╎ ╎ ╎ 1 @Compiler/…rt.jl:68 searchsortedfirst ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…rt.jl:68 #searchsortedfirst#1 ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…t.jl:66 searchsortedfirst ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…t.jl:14 searchsortedfirst ╎ ╎ ╎ ╎ ╎ 1 @Base/…ring.jl:121 lt 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:522 <= ╎ ╎ ╎ ╎ 1 @Compiler/…ssa.jl:894 construct_ssa!(ci::Core.CodeInfo… ╎ ╎ ╎ ╎ 1 @Compiler/…sa.jl:424 domsort_ssa!(ir::Compiler.IRCode… ╎ ╎ ╎ ╎ 1 @Compiler/…ir.jl:347 setindex! 1╎ ╎ ╎ ╎ 1 @Compiler/…ir.jl:338 setindex! ╎ ╎ ╎ ╎ 3 @Compiler/…ing.jl:79 ssa_inlining_pass! ╎ ╎ ╎ ╎ 2 @Compiler/…ing.jl:663 batch_inline!(ir::Compiler.IRCod… ╎ ╎ ╎ ╎ 1 @Compiler/…ng.jl:417 ir_inline_item!(compact::Compile… ╎ ╎ ╎ ╎ 1 @Compiler/…ng.jl:1846 ssa_substitute_op!(insert_node… ╎ ╎ ╎ ╎ 1 @Compiler/…ir.jl:639 setindex! 1╎ ╎ ╎ ╎ ╎ 1 @Compiler/…r.jl:591 _useref_setindex!(stmt::Any, o… ╎ ╎ ╎ ╎ 1 @Compiler/…ng.jl:437 ir_inline_item!(compact::Compile… ╎ ╎ ╎ ╎ 1 @Compiler/…ir.jl:1154 setindex!(compact::Compiler.In… ╎ ╎ ╎ ╎ 1 @Compiler/…r.jl:1122 setindex! ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…r.jl:1114 kill_current_uses!(compact::C… 1╎ ╎ ╎ ╎ ╎ 1 @Compiler/…r.jl:644 userefs ╎ ╎ ╎ ╎ 1 @Compiler/…ing.jl:665 batch_inline!(ir::Compiler.IRCod… ╎ ╎ ╎ ╎ 1 @Compiler/…ng.jl:551 ir_inline_unionsplit!(compact::C… ╎ ╎ ╎ ╎ 1 @Compiler/…cs.jl:873 isa_tfunc(𝕃::Compiler.PartialsL… ╎ ╎ ╎ ╎ 1 @Compiler/…ce.jl:517 ⊑(lattice::Compiler.PartialsLa… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…e.jl:539 ⊑ 1╎ ╎ ╎ ╎ ╎ 1 @Compiler/…e.jl:153 ⊑ ╎ ╎ ╎ ╎ 1 @Compiler/…ses.jl:2101 adce_pass!(ir::Compiler.IRCode, … ╎ ╎ ╎ ╎ 1 @Compiler/…/ir.jl:661 iterate ╎ ╎ ╎ ╎ 1 @Compiler/…ir.jl:653 _advance(stmt::Any, op::Int64) 1╎ ╎ ╎ ╎ 1 @Compiler/…/ir.jl:0 _useref_getindex(stmt::Any, op::… ╎ ╎ ╎ ╎ 1 @Compiler/…ses.jl:2103 adce_pass!(ir::Compiler.IRCode, … ╎ ╎ ╎ ╎ 1 @Compiler/…ir.jl:1871 iterate ╎ ╎ ╎ ╎ 1 @Compiler/…ir.jl:1949 iterate_compact(compact::Compil… ╎ ╎ ╎ ╎ 1 @Compiler/…ir.jl:1622 process_node!(compact::Compile… ╎ ╎ ╎ ╎ 1 @Base/boot.jl:648 Array 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:588 GenericMemory ╎ ╎ ╎ ╎ 1 @Compiler/…ses.jl:1367 sroa_pass!(ir::Compiler.IRCode, … ╎ ╎ ╎ ╎ 1 @Compiler/…ses.jl:14 is_known_invoke_or_call(x::Any, f… ╎ ╎ ╎ ╎ 1 @Compiler/…ze.jl:496 argextype ╎ ╎ ╎ ╎ 1 @Compiler/…ze.jl:497 argextype ╎ ╎ ╎ ╎ 1 @Compiler/…ze.jl:532 argextype(x::Any, src::Compile… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…n.jl:3611 abstract_eval_globalref_type ╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:3741 abstract_load_all_consistent_… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:3726 scan_leaf_partitions ╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:3723 scan_specified_partitions(q… 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:1092 Pair ╎ ╎ ╎ 1 @Compiler/…mize.jl:1033 optimize(interp::Compiler.NativeIn… ╎ ╎ ╎ 1 @Compiler/…mize.jl:1009 ipo_dataflow_analysis!(interp::Co… ╎ ╎ ╎ 1 @Compiler/…terp.jl:286 scan!(callback::Compiler.ScanStmt… ╎ ╎ ╎ ╎ 1 @Compiler/…ize.jl:899 (::Compiler.ScanStmt)(inst::Compi… ╎ ╎ ╎ ╎ 1 @Compiler/…ize.jl:878 scan_inconsistency!(inst::Compil… ╎ ╎ ╎ ╎ 1 @Compiler/…ir.jl:661 iterate ╎ ╎ ╎ ╎ 1 @Compiler/…ir.jl:653 _advance(stmt::Any, op::Int64) 1╎ ╎ ╎ ╎ 1 @Compiler/…ir.jl:0 _useref_getindex(stmt::Any, op::… ╎ ╎ ╎ 2 @Compiler/…infer.jl:236 finish_nocycle(::Compiler.NativeInt… ╎ ╎ ╎ 1 @Compiler/…nfer.jl:135 finish!(interp::Compiler.NativeInte… 1╎ ╎ ╎ 1 @Compiler/…mize.jl:312 ir_to_codeinf! ╎ ╎ ╎ 1 @Compiler/…nfer.jl:147 finish!(interp::Compiler.NativeInte… 1╎ ╎ ╎ 1 @Compiler/…nfer.jl:447 maybe_compress_codeinfo ╎ ╎ 3 @Compiler/…einfer.jl:1569 typeinf_ext_toplevel 3╎ ╎ 3 @Compiler/…infer.jl:1562 add_codeinsts_to_jit!(interp::Compil… ╎ ╎ 1 @Base/channels.jl:709 iterate(c::Channel{Any}, state::Nothing) ╎ ╎ 1 @Base/channels.jl:526 take! ╎ ╎ 1 @Base/channels.jl:549 take_unbuffered(c::Channel{Any}) ╎ ╎ ╎ 1 @Base/condition.jl:136 wait ╎ ╎ ╎ 1 @Base/condition.jl:141 wait(c::Base.GenericCondition{Reentr… ╎ ╎ ╎ 1 @Base/task.jl:1203 wait() 1╎ ╎ ╎ 1 @Base/task.jl:1115 try_yieldto(undo::typeof(Base.ensure_r… Task 0x00007d9148a91000 Total snapshots: 26. Utilization: 100% ╎1 @Compiler/…/typeinfer.jl:1577 typeinf_ext_toplevel(mi::Core.MethodInstan… ╎ 1 @Compiler/…typeinfer.jl:1568 typeinf_ext_toplevel ╎ 1 @Compiler/…typeinfer.jl:1385 typeinf_ext(interp::Compiler.NativeInterp… ╎ 1 @Compiler/…retation.jl:4528 typeinf(interp::Compiler.NativeInterprete… ╎ 1 @Compiler/…ypeinfer.jl:232 finish_nocycle(::Compiler.NativeInterpret… ╎ 1 @Compiler/…optimize.jl:1032 optimize(interp::Compiler.NativeInterpr… ╎ ╎ 1 @Compiler/…ptimize.jl:1059 run_passes_ipo_safe ╎ ╎ 1 @Compiler/…ptimize.jl:1046 run_passes_ipo_safe(ci::Core.CodeInfo,… ╎ ╎ 1 @Compiler/…nlining.jl:76 ssa_inlining_pass! ╎ ╎ 1 @Compiler/…lining.jl:1662 assemble_inline_todo!(ir::Compiler.IR… ╎ ╎ 1 @Compiler/…lining.jl:1413 handle_call! ╎ ╎ ╎ 1 @Compiler/…ining.jl:1381 compute_inlining_cases(info::Compile… ╎ ╎ ╎ 1 @Compiler/…ining.jl:1309 handle_any_const_result! ╎ ╎ ╎ 1 @Compiler/…ning.jl:1321 handle_any_const_result!(cases::Vec… ╎ ╎ ╎ 1 @Compiler/…ning.jl:1421 handle_match! ╎ ╎ ╎ 1 @Compiler/…ning.jl:1429 handle_match!(cases::Vector{Compi… ╎ ╎ ╎ ╎ 1 @Compiler/…ning.jl:921 analyze_method! ╎ ╎ ╎ ╎ 1 @Compiler/…ing.jl:954 analyze_method!(match::Core.Metho… ╎ ╎ ╎ ╎ 1 @Compiler/…ing.jl:873 resolve_todo(mi::Core.MethodInst… ╎ ╎ ╎ ╎ 1 @Compiler/…ng.jl:958 retrieve_ir_for_inlining ╎ ╎ ╎ ╎ 1 @Base/…ernals.jl:1609 _uncompressed_ir(codeinst::Cor… Task 0x00007d9148a90f10 Total snapshots: 1. Utilization: 100% logdir => "/tmp/jl_YrVJHX" initW => nothing dim => "3" rowvarlist => "" input => "/tmp/jl_lVgTLT/Data.zst" noversamples => 5 niter => 3 perm => false pseudocount => 1.0f0 colsumlist => "" rowmeanlist => "/tmp/jl_YrVJHX/Feature_FTTMeans.csv" cper => 1.0f0 outdir => "/tmp/jl_YrVJHX" initV => nothing ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 197 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_67392.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 jl_apply at /source/src/julia.h:2382 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_67392.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 jl_apply at /source/src/julia.h:2382 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== Random Projection : Y = A Ω ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000785d01da4b50 Total snapshots: 159. Utilization: 0% ╎159 @Base/task.jl:1137 wait_forever() 158╎ 159 @Base/task.jl:1200 wait() Progress: 1%|▎ | ETA: 0:16:41 Progress: 100%|█████████████████████████████████████████| Time: 0:00:07 QR factorization : Q = qr(Y) Subspace iterations (1/2) : qr(A' Q) [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_67392.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 jl_apply at /source/src/julia.h:2382 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 30065380 (Pool: 30064779; Big: 601); GC: 25 [616] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/bin/halko:93 scan_specified_partitions at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3719 scan_leaf_partitions at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3726 [inlined] abstract_load_all_consistent_leaf_partitions at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3741 [inlined] abstract_eval_globalref_type at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3611 [inlined] argextype at ./../usr/share/julia/Compiler/src/optimize.jl:532 argextype at ./../usr/share/julia/Compiler/src/optimize.jl:497 [inlined] argextype at ./../usr/share/julia/Compiler/src/optimize.jl:496 [inlined] is_known_call at ./../usr/share/julia/Compiler/src/ssair/passes.jl:5 sroa_pass! at ./../usr/share/julia/Compiler/src/ssair/passes.jl:1370 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1046 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1059 [inlined] optimize at ./../usr/share/julia/Compiler/src/optimize.jl:1032 jfptr_optimize_86684.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 finish_nocycle at ./../usr/share/julia/Compiler/src/typeinfer.jl:232 jfptr_finish_nocycle_86538.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4528 const_prop_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:1348 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:898 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:868 [inlined] handle1 at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:178 [197] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/test/test_halko.jl:17 infercalls at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:252 abstract_call_gf_by_type at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:338 abstract_call_known at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2796 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2903 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2896 [inlined] abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3056 abstract_eval_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3074 [inlined] abstract_eval_statement_expr at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3430 abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3857 [inlined] abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3814 [inlined] typeinf_local at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4363 jfptr_typeinf_local_83427.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4521 const_prop_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:1348 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:898 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:868 [inlined] handle1 at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:178 infercalls at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:252 abstract_call_gf_by_type at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:338 abstract_call_known at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2796 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2903 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2896 [inlined] abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3056 abstract_eval_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3074 [inlined] abstract_eval_statement_expr at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3430 abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3857 [inlined] abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3814 [inlined] typeinf_local at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4363 jfptr_typeinf_local_83427.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4521 const_prop_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:1348 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:898 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:868 [inlined] handle1 at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:178 infercalls at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:252 abstract_call_gf_by_type at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:338 abstract_call_known at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2796 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2903 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2896 [inlined] abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3056 abstract_eval_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3074 [inlined] abstract_eval_statement_expr at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3430 abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3857 [inlined] abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3814 [inlined] typeinf_local at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4363 jfptr_typeinf_local_83427.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4521 const_prop_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:1348 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:898 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:868 [inlined] handle1 at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:178 infercalls at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:252 abstract_call_gf_by_type at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:338 abstract_call_known at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2796 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2903 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2896 [inlined] abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3056 abstract_eval_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3074 [inlined] abstract_eval_statement_expr at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3430 abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3857 [inlined] abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3814 [inlined] typeinf_local at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4363 jfptr_typeinf_local_83427.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4521 const_prop_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:1348 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:898 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:868 [inlined] handle1 at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:178 jfptr_handle1_80482.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 doworkloop at ./../usr/share/julia/Compiler/src/inferencestate.jl:1206 jfptr_doworkloop_63501.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4512 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1385 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1568 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1577 jfptr_typeinf_ext_toplevel_84824.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 jl_apply at /source/src/julia.h:2382 [inlined] jl_type_infer at /source/src/gf.c:462 jl_compile_method_internal at /source/src/gf.c:3583 _jl_invoke at /source/src/gf.c:4053 [inlined] ijl_apply_generic at /source/src/gf.c:4258 #halko##2 at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/halko.jl:110 #open#333 at ./io.jl:420 open at ./io.jl:417 [inlined] halko at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/halko.jl:97 unknown function (ip: 0x7d9174b5f97d) at (unknown file) _jl_invoke at /source/src/gf.c:4061 [inlined] ijl_apply_generic at /source/src/gf.c:4258 #halko#87 at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/halko.jl:38 halko at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/src/halko.jl:33 unknown function (ip: 0x7d9174b48eaf) at (unknown file) _jl_invoke at /source/src/gf.c:4061 [inlined] ijl_apply_generic at /source/src/gf.c:4258 main at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/bin/halko:71 unknown function (ip: 0x7d9174b1391f) at (unknown file) _jl_invoke at /source/src/gf.c:4061 [inlined] ijl_apply_generic at /source/src/gf.c:4258 jl_apply at /source/src/julia.h:2382 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:690 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:772 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 include_string at ./loading.jl:2918 _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 _include at ./loading.jl:2978 include at ./Base.jl:308 exec_options at ./client.jl:330 _start at ./client.jl:563 jfptr__start_74350.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 jl_apply at /source/src/julia.h:2382 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7d917640a249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 22888689 (Pool: 22888381; Big: 308); GC: 18 _ZNK4llvm10BasicBlock13getTerminatorEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZNK4llvm8LoopBaseINS_10BasicBlockENS_4LoopEE13getExitBlocksERNS_15SmallVectorImplIPS1_EE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZNK4llvm8LoopBaseINS_10BasicBlockENS_4LoopEE10verifyLoopEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6detail18UniqueFunctionBaseIvJNS_9StringRefENS_3AnyEEE8CallImplIZNS_25FunctionToLoopPassAdaptor3runERNS_8FunctionERNS_15AnalysisManagerIS7_JEEEEUlS2_S3_E_EEvPvS2_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZNK4llvm19PassInstrumentation13runBeforePassINS_4LoopENS_6detail11PassConceptIS2_NS_15AnalysisManagerIS2_JRNS_27LoopStandardAnalysisResultsEEEEJS7_RNS_10LPMUpdaterEEEEEEbRKT0_RKT_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE13runSinglePassIS1_St10unique_ptrINS_6detail11PassConceptIS1_S5_JS4_S7_EEESt14default_deleteISD_EEEESt8optionalINS_17PreservedAnalysesEERT_RT0_RS5_S4_S7_RNS_19PassInstrumentationE.isra.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE24runWithoutLoopNestPassesERS1_RS5_S4_S7_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE3runERS1_RS5_S4_S7_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm25FunctionToLoopPassAdaptor3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:791 operator() at /source/src/jitlayers.cpp:1510 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1471 [inlined] operator() at /source/src/jitlayers.cpp:1623 [inlined] addModule at /source/src/jitlayers.cpp:2080 jl_compile_codeinst_now at /source/src/jitlayers.cpp:682 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:873 jl_compile_method_internal at /source/src/gf.c:3595 _jl_invoke at /source/src/gf.c:4053 [inlined] ijl_apply_generic at /source/src/gf.c:4258 jl_apply at /source/src/julia.h:2382 [inlined] jl_f_invokelatest at /source/src/builtins.c:883 profile_printing_listener at ./Base.jl:336 #start_profile_listener##0 at ./Base.jl:354 jfptr_YY.start_profile_listenerYY.YY.0_19281.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 jl_apply at /source/src/julia.h:2382 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 80235263 (Pool: 80234035; Big: 1228); GC: 65 PkgEval terminated after 2735.45s: test duration exceeded the time limit