Package evaluation of StructuralIdentifiability on Julia 1.13.0-DEV.1099 (5c93bf20fd*) started at 2025-09-09T14:56:54.021 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.84s ################################################################################ # Installation # Installing StructuralIdentifiability... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [220ca800] + StructuralIdentifiability v0.5.16 Updating `~/.julia/environments/v1.13/Manifest.toml` ⌅ [c3fe647b] + AbstractAlgebra v0.44.13 [a9b6321e] + Atomix v1.1.2 [861a8166] + Combinatorics v1.0.3 [864edb3b] + DataStructures v0.19.1 [e2ba6199] + ExprTools v0.1.10 [0b43b601] + Groebner v0.9.5 [18e54dd8] + IntegerMathUtils v0.1.3 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.1 [1914dd2f] + MacroTools v0.5.16 ⌅ [2edaba10] + Nemo v0.49.5 [bac558e1] + OrderedCollections v1.8.1 [3e851597] + ParamPunPam v0.5.2 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.11.0 [fb686558] + RandomExtensions v0.4.4 [220ca800] + StructuralIdentifiability v0.5.16 [a759f4b9] + TimerOutputs v0.5.29 [013be700] + UnsafeAtomics v0.3.0 ⌅ [e134572f] + FLINT_jll v300.200.201+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [3a97d323] + MPFR_jll v4.2.2+0 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.76s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 210.8s ################################################################################ # Testing # Testing StructuralIdentifiability Status `/tmp/jl_tDemoY/Project.toml` ⌅ [c3fe647b] AbstractAlgebra v0.44.13 [4c88cf16] Aqua v0.8.14 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.0.3 [864edb3b] DataStructures v0.19.1 [0b43b601] Groebner v0.9.5 [c8e1da08] IterTools v1.10.0 [1914dd2f] MacroTools v0.5.16 ⌅ [2edaba10] Nemo v0.49.5 [3e851597] ParamPunPam v0.5.2 [aea7be01] PrecompileTools v1.3.3 [27ebfcd6] Primes v0.5.7 [276daf66] SpecialFunctions v2.5.1 [220ca800] StructuralIdentifiability v0.5.16 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_tDemoY/Manifest.toml` ⌅ [c3fe647b] AbstractAlgebra v0.44.13 [4c88cf16] Aqua v0.8.14 [a9b6321e] Atomix v1.1.2 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.0.3 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.0 [adafc99b] CpuId v0.3.1 [864edb3b] DataStructures v0.19.1 [ab62b9b5] DeepDiffs v1.2.0 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [0b43b601] Groebner v0.9.5 [615f187c] IfElse v0.1.1 [18e54dd8] IntegerMathUtils v0.1.3 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 ⌅ [2edaba10] Nemo v0.49.5 [bac558e1] OrderedCollections v1.8.1 [3e851597] ParamPunPam v0.5.2 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.11.0 [fb686558] RandomExtensions v0.4.4 [276daf66] SpecialFunctions v2.5.1 [aedffcd0] Static v1.2.0 [220ca800] StructuralIdentifiability v0.5.16 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e134572f] FLINT_jll v300.200.201+0 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.15.0+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [3a97d323] MPFR_jll v4.2.2+0 [14a3606d] MozillaCACerts_jll v2025.8.12 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.0+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 9553.3 ms ✓ AbstractAlgebra → TestExt 1 dependency successfully precompiled in 10 seconds. 18 already precompiled. Resolving package versions... Updating `/tmp/jl_tDemoY/Project.toml` ⌅ [864edb3b] ↓ DataStructures v0.19.1 ⇒ v0.18.22 [loaded: v0.19.1] [961ee093] + ModelingToolkit v10.21.0 Updating `/tmp/jl_tDemoY/Manifest.toml` [47edcb42] + ADTypes v1.17.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.20.0 [4c555306] + ArrayLayouts v1.11.2 [e2ed5e7c] + Bijections v0.2.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.7.2 [70df07ce] + BracketingNonlinearSolve v1.3.0 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [a80b9123] + CommonMark v0.9.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] ↓ DataStructures v0.19.1 ⇒ v0.18.22 [loaded: v0.19.1] [2b5f629d] + DiffEqBase v6.188.0 [459566f4] + DiffEqCallbacks v4.9.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.7 [8d63f2c5] + DispatchDoctor v0.4.26 [31c24e10] + Distributions v0.25.120 [5b8099bc] + DomainSets v0.7.16 [7c1d4256] + DynamicPolynomials v0.6.3 [06fc5a27] + DynamicQuantities v1.8.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.13 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.3 [1a297f60] + FillArrays v1.13.0 [64ca27bc] + FindFirstFunctions v1.4.1 [6a86dc24] + FiniteDiff v2.28.1 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.1.0 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.1 [34004b35] + HypergeometricFunctions v0.3.28 [3263718b] + ImplicitDiscreteSolve v1.2.0 [d25df0c9] + Inflate v0.1.5 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [82899510] + IteratorInterfaceExtensions v1.0.0 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v2.1.6 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.18.0 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.0 [d8e11817] + MLStyle v0.4.17 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [961ee093] + ModelingToolkit v10.21.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 ⌃ [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.6.4 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [be0214bd] + NonlinearSolveBase v1.14.0 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [bbf590c4] + OrdinaryDiffEqCore v1.33.0 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.6 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.34 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.37.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [9dfe8606] + SCCNonlinearSolve v1.4.0 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.117.1 [19f34311] + SciMLJacobianOperators v0.1.11 [c0aeaf25] + SciMLOperators v1.7.1 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.7.0 [699a6c99] + SimpleTraits v0.9.5 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [7792a7ef] + StrideArraysCore v0.5.8 [2efcf032] + SymbolicIndexingInterface v0.3.43 [19f23fe9] + SymbolicLimits v0.2.2 ⌃ [d1185830] + SymbolicUtils v3.31.0 [0c5d862f] + Symbolics v6.54.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [410a4b4d] + Tricks v0.1.12 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.24.0 [a7c27f48] + Unityper v0.1.6 [61579ee1] + Ghostscript_jll v9.55.1+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [f50d1b31] + Rmath_jll v0.5.1+0 [9fa8497b] + Future v1.11.0 [a63ad114] + Mmap v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [4607b0f0] + SuiteSparse Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Resolving package versions... Updating `/tmp/jl_tDemoY/Project.toml` [0c5d862f] + Symbolics v6.54.0 Manifest No packages added to or removed from `/tmp/jl_tDemoY/Manifest.toml` Precompiling packages... 1557.3 ms ✓ CommonSubexpressions 1061.8 ms ✓ PoissonRandom 2064.9 ms ✓ SimpleTraits 3218.3 ms ✓ DispatchDoctor 1531.2 ms ✓ TruncatedStacktraces 2241.7 ms ✓ Accessors → UnitfulExt 1370.2 ms ✓ MaybeInplace 12128.3 ms ✓ CommonMark 5089.8 ms ✓ Static 1211.9 ms ✓ Rmath_jll 3717.8 ms ✓ SciMLOperators 2747.5 ms ✓ SymbolicIndexingInterface 1498.8 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 5936.5 ms ✓ MultivariatePolynomials 1130.7 ms ✓ ResettableStacks 21201.0 ms ✓ ArrayLayouts 1581.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 2905.6 ms ✓ Accessors → StaticArraysExt 3103.4 ms ✓ HypergeometricFunctions 6993.4 ms ✓ Latexify 9188.6 ms ✓ ForwardDiff 9358.6 ms ✓ Graphs 1489.1 ms ✓ DispatchDoctor → DispatchDoctorChainRulesCoreExt 982.3 ms ✓ DispatchDoctor → DispatchDoctorEnzymeCoreExt 11907.0 ms ✓ DynamicQuantities 1295.0 ms ✓ MaybeInplace → MaybeInplaceSparseArraysExt 59636.2 ms ✓ JuliaFormatter 982.8 ms ✓ BitTwiddlingConvenienceFunctions 8180.6 ms ✓ StaticArrayInterface 2588.4 ms ✓ CPUSummary 1819.0 ms ✓ Rmath 1424.9 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1887.1 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 3651.6 ms ✓ RecursiveArrayTools 5024.4 ms ✓ DynamicPolynomials 3825.6 ms ✓ ArrayLayouts → ArrayLayoutsSparseArraysExt 4743.1 ms ✓ BlockArrays 2588.3 ms ✓ Latexify → SparseArraysExt 3859.2 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 3217.4 ms ✓ FastPower → FastPowerForwardDiffExt 2786.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 2636.0 ms ✓ Unitful → ForwardDiffExt 1371.6 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 1802.3 ms ✓ DynamicQuantities → DynamicQuantitiesLinearAlgebraExt 4023.0 ms ✓ DynamicQuantities → DynamicQuantitiesUnitfulExt 1115.6 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1992.8 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1922.4 ms ✓ CloseOpenIntervals 1508.5 ms ✓ LayoutPointers 1893.3 ms ✓ PolyesterWeave 3026.6 ms ✓ StatsFuns 2216.7 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 1807.5 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 29477.5 ms ✓ SciMLBase 68911.0 ms ✓ SymbolicUtils 2953.6 ms ✓ BlockArrays → BlockArraysAdaptExt 4631.4 ms ✓ NLSolversBase 2128.0 ms ✓ StrideArraysCore 3718.0 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 1645.1 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 10344.8 ms ✓ Distributions 3225.5 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 6434.7 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 4329.9 ms ✓ SciMLBase → SciMLBaseMLStyleExt 7962.9 ms ✓ SciMLJacobianOperators 3297.2 ms ✓ SCCNonlinearSolve 9697.7 ms ✓ SymbolicLimits 6761.9 ms ✓ LineSearches 2257.0 ms ✓ Polyester 4125.8 ms ✓ Distributions → DistributionsTestExt 3530.3 ms ✓ Distributions → DistributionsChainRulesCoreExt 33969.4 ms ✓ SciMLBase → SciMLBaseDistributionsExt 21178.9 ms ✓ LineSearch 15988.6 ms ✓ NonlinearSolveBase 11561.4 ms ✓ Optim 2763.6 ms ✓ FastBroadcast 156440.4 ms ✓ Symbolics 27510.7 ms ✓ LineSearch → LineSearchLineSearchesExt 23616.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 3417.3 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 6407.6 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 7923.8 ms ✓ BracketingNonlinearSolve 2532.9 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 13277.2 ms ✓ Symbolics → SymbolicsForwardDiffExt 12211.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt 3715.6 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 7400.9 ms ✓ DiffEqBase 16900.0 ms ✓ Symbolics → SymbolicsPreallocationToolsExt 3680.5 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 31093.8 ms ✓ SimpleNonlinearSolve 4210.3 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 4924.1 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 4490.5 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 5612.8 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 10248.9 ms ✓ OrdinaryDiffEqCore 12233.3 ms ✓ DiffEqCallbacks 4007.0 ms ✓ NonlinearSolveBase → NonlinearSolveBaseDiffEqBaseExt 5339.1 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveDiffEqBaseExt 3841.3 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 145946.2 ms ✓ DiffEqNoiseProcess 19705.8 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 43321.1 ms ✓ JumpProcesses 104006.5 ms ✓ ImplicitDiscreteSolve Info Given ModelingToolkit was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in var"#bareiss_update_virtual_colswap_mtk!#1429"(Any, typeof(ModelingToolkit.bareiss_update_virtual_colswap_mtk!), Any, ModelingToolkit.SparseMatrixCLIL{T, Ti} where Ti<:Integer where T, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/ModelingToolkit/hlGut/src/systems/sparsematrixclil.jl ┌ Warning: `enqueue!(q::Queue, x)` is deprecated, use `Base.push!(q, x)` instead. │ caller = topsort_equations(eqs::Vector{Symbolics.Equation}, unknowns::Vector{SymbolicUtils.BasicSymbolic}; check::Bool) at alias_elimination.jl:429 └ @ Core ~/.julia/packages/ModelingToolkit/hlGut/src/systems/alias_elimination.jl:429 ┌ Warning: `dequeue!(q::Queue)` is deprecated, use `Base.popfirst!(q)` instead. │ caller = topsort_equations(eqs::Vector{Symbolics.Equation}, unknowns::Vector{SymbolicUtils.BasicSymbolic}; check::Bool) at alias_elimination.jl:436 └ @ Core ~/.julia/packages/ModelingToolkit/hlGut/src/systems/alias_elimination.jl:436 495110.2 ms ✓ ModelingToolkit 104 dependencies successfully precompiled in 1695 seconds. 167 already precompiled. 3 dependencies had output during precompilation: ┌ Graphs │ WARNING: importing deprecated binding DataStructures.IntDisjointSets into Graphs. │ , use IntDisjointSet instead. └ ┌ JumpProcesses │ WARNING: importing deprecated binding DataStructures.IntDisjointSets into Graphs. │ , use IntDisjointSet instead. └ ┌ ModelingToolkit │ [Output was shown above] └ Precompiling packages... 4146.4 ms ✓ DataStructures 9361.7 ms ✓ Groebner → GroebnerDynamicPolynomialsExt 2 dependencies successfully precompiled in 14 seconds. 43 already precompiled. 1 dependency precompiled but a different version is currently loaded. Restart julia to access the new version. Otherwise, loading dependents of this package may trigger further precompilation to work with the unexpected version. Precompiling packages... Info Given SymbolicsNemoExt was explicitly requested, output will be shown live  [ Info: Assuming ((1//128)*(√((5120//1)*(a^4)) - (80//1)*(a^2))) != 0 [ Info: Assuming ((1//128)*(√((5120//1)*(a^4)) - (80//1)*(a^2))) != 0 108872.1 ms ✓ Symbolics → SymbolicsNemoExt 1 dependency successfully precompiled in 110 seconds. 159 already precompiled. 1 dependency had output during precompilation: ┌ Symbolics → SymbolicsNemoExt │ [Output was shown above] └ Precompiling packages... 21719.5 ms ✓ Symbolics → SymbolicsGroebnerExt 1 dependency successfully precompiled in 23 seconds. 164 already precompiled. Precompiling packages... 47281.5 ms ✓ ModelingToolkit → MTKDeepDiffsExt 1 dependency successfully precompiled in 49 seconds. 272 already precompiled. Precompiling packages... 64674.0 ms ✓ StructuralIdentifiability → ModelingToolkitSIExt 1 dependency successfully precompiled in 67 seconds. 289 already precompiled. [ Info: Testing started [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y ┌ Warning: New variable c, treating as a scalar parameter └ @ StructuralIdentifiability ~/.julia/packages/StructuralIdentifiability/0tPYp/src/pb_representation.jl:94 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: a [ Info: Parameters: b [ Info: Inputs: c [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: a, b [ Info: Parameters: k1, k2 [ Info: Inputs: c [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y 2.023225 seconds (924.72 k allocations: 49.686 MiB, 99.44% compilation time) 0.001697 seconds (7.36 k allocations: 338.445 KiB) 0.001518 seconds (10.83 k allocations: 487.016 KiB) 0.001322 seconds (10.79 k allocations: 481.781 KiB) 0.001672 seconds (14.56 k allocations: 637.758 KiB) 0.000920 seconds (7.97 k allocations: 362.828 KiB) 0.000737 seconds (7.49 k allocations: 302.797 KiB) 14.021565 seconds (6.45 M allocations: 346.252 MiB, 1.20% gc time, 99.76% compilation time) [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: [ Info: Inputs: u [ Info: Outputs: y 0.313361 seconds (110.85 k allocations: 6.251 MiB, 97.96% compilation time) [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: [ Info: Inputs: u [ Info: Outputs: y ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 39 running 1 of 1 signal (10): User defined signal 1 _ZN15LiveDebugValues11MLocTracker12writeRegMaskEPKN4llvm14MachineOperandEjj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN15LiveDebugValues16InstrRefBasedLDV19transferRegisterDefERN4llvm12MachineInstrE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN15LiveDebugValues16InstrRefBasedLDV27produceMLocTransferFunctionERN4llvm15MachineFunctionERNS1_15SmallVectorImplINS1_13SmallDenseMapINS_6LocIdxENS_10ValueIDNumELj4ENS1_12DenseMapInfoIS6_vEENS1_6detail12DenseMapPairIS6_S7_EEEEEEj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN15LiveDebugValues16InstrRefBasedLDV12ExtendRangesERN4llvm15MachineFunctionEPNS1_20MachineDominatorTreeEPNS1_16TargetPassConfigEjj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1612 addModule at /source/src/jitlayers.cpp:2093 jl_compile_codeinst_now at /source/src/jitlayers.cpp:682 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:873 jl_compile_method_internal at /source/src/gf.c:3595 _jl_invoke at /source/src/gf.c:4053 [inlined] ijl_apply_generic at /source/src/gf.c:4258 det_minor_expansion_inner at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/elimination.jl:24 unknown function (ip: 0x71a98d9f23a2) at (unknown file) _jl_invoke at /source/src/gf.c:4061 [inlined] ijl_apply_generic at /source/src/gf.c:4258 det_minor_expansion_inner at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/elimination.jl:24 det_minor_expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/elimination.jl:43 eliminate_var at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/elimination.jl:308 find_ioprojections at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/io_equation.jl:109 #_find_ioequations#221 at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/io_equation.jl:359 _find_ioequations at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/io_equation.jl:359 [inlined] #219 at ./none (unknown line) [inlined] with_logstate at ./logging/logging.jl:540 with_logger at ./logging/logging.jl:651 [inlined] #find_ioequations#217 at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/io_equation.jl:347 find_ioequations at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/io_equation.jl:347 unknown function (ip: 0x71a9d4a26fc2) at (unknown file) _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 macro expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/diffreduction.jl:129 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:1952 [inlined] top-level scope at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/diffreduction.jl:2 _jl_invoke at /source/src/gf.c:4061 [inlined] ijl_invoke at /source/src/gf.c:4068 jl_toplevel_eval_flex at /source/src/toplevel.c:761 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 include_string at ./loading.jl:2918 _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 _include at ./loading.jl:2978 include at ./Base.jl:309 IncludeInto at ./Base.jl:310 unknown function (ip: 0x71a9b0524fd2) at (unknown file) _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 macro expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/runtests.jl:162 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:1952 [inlined] macro expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/runtests.jl:160 [inlined] macro expansion at ./timing.jl:645 [inlined] top-level scope at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/runtests.jl:159 _jl_invoke at /source/src/gf.c:4061 [inlined] ijl_invoke at /source/src/gf.c:4068 jl_toplevel_eval_flex at /source/src/toplevel.c:761 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 include_string at ./loading.jl:2918 _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 _include at ./loading.jl:2978 include at ./Base.jl:309 IncludeInto at ./Base.jl:310 jfptr_IncludeInto_55996.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 jl_apply at /source/src/julia.h:2382 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:690 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:772 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 exec_options at ./client.jl:296 _start at ./client.jl:563 jfptr__start_51596.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 jl_apply at /source/src/julia.h:2382 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x71a9ea517249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) #= 60.2 ms =# precompile(Tuple{typeof(Base.first), Base.ValueIterator{Base.Dict{String, AbstractAlgebra.MPolyRingElem{T} where T}}}) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== 0.010506 seconds (9.79 k allocations: 544.180 KiB, 90.72% compilation time) [ Info: Summary of the model: ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_61890.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 jl_apply at /source/src/julia.h:2382 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007950b4f951e0 Total snapshots: 417. Utilization: 0% ╎417 @Base/task.jl:1137 wait_forever() 416╎ 417 @Base/task.jl:1200 wait() [ Info: State variables: x [ Info: Parameters: a, b ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 [ Info: Inputs: u Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000071a9d05fc010 Total snapshots: 9. Utilization: 100% ╎8 @Base/client.jl:563 _start() ╎ 8 @Base/client.jl:296 exec_options(opts::Base.JLOptions) ╎ 8 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ 8 @Base/Base.jl:310 (::Base.IncludeInto)(fname::String) ╎ 8 @Base/Base.jl:309 include(mapexpr::Function, mod::Module, _path::Strin… ╎ 8 @Base/loading.jl:2978 _include(mapexpr::Function, mod::Module, _path:… ╎ ╎ 8 @Base/loading.jl:2918 include_string(mapexpr::typeof(identity), mod:… ╎ ╎ 8 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 8 @StructuralIdentifiability/…:159 top-level scope ╎ ╎ 8 @Base/timing.jl:645 macro expansion ╎ ╎ 8 @StructuralIdentifiability/…:160 macro expansion ╎ ╎ ╎ 8 @Test/src/Test.jl:1952 macro expansion ╎ ╎ ╎ 8 @StructuralIdentifiability/…:162 macro expansion ╎ ╎ ╎ 8 @Base/Base.jl:310 (::Base.IncludeInto)(fname::String) ╎ ╎ ╎ 8 @Base/Base.jl:309 include(mapexpr::Function, mod::Module, _p… ╎ ╎ ╎ 8 @Base/loading.jl:2978 _include(mapexpr::Function, mod::Modu… ╎ ╎ ╎ ╎ 8 @Base/loading.jl:2918 include_string(mapexpr::typeof(ident… ╎ ╎ ╎ ╎ 8 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ ╎ ╎ 8 @StructuralIdentifiability/…:2 top-level scope ╎ ╎ ╎ ╎ 8 @Test/…rc/Test.jl:1952 macro expansion ╎ ╎ ╎ ╎ 8 @StructuralIdentifiability/…:134 macro expansion 4╎ ╎ ╎ ╎ ╎ 5 @StructuralIdentifiability/…:251 io_switch!(pbr::PBRe… 2╎ ╎ ╎ ╎ ╎ 3 @StructuralIdentifiability/…:252 io_switch!(pbr::PBRe… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…er.jl:1577 typeinf_ext_toplevel(mi::Core.… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…r.jl:1569 typeinf_ext_toplevel 1╎ ╎ ╎ ╎ ╎ 1 @Compiler/…r.jl:1562 add_codeinsts_to_jit!(interp:… [ Info: Outputs: y [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_61890.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 jl_apply at /source/src/julia.h:2382 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 23602016 (Pool: 23601388; Big: 628); GC: 19 [39] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/exports.jl:1 _ZN4llvm12TBAAVerifier18verifyTBAABaseNodeERNS_11InstructionEPKNS_6MDNodeEb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) unknown function (ip: 0x41070000) at (unknown file) unknown function (ip: (nil)) at (unknown file) Allocations: 199637402 (Pool: 199634228; Big: 3174); GC: 87 PkgEval terminated after 2727.67s: test duration exceeded the time limit