Package evaluation of Stheno on Julia 1.13.0-DEV.1099 (5c93bf20fd*) started at 2025-09-09T17:21:19.864 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.79s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.2 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.13.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.1 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.62s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 34.35s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_2hPWAX/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.32 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_2hPWAX/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.2 [a9b6321e] Atomix v1.1.2 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.26.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.1 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [f6369f11] ForwardDiff v1.1.0 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.4 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.38 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.2 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.37+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.8.12 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.0+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 9712.0 ms ✓ Documenter 1 dependency successfully precompiled in 10 seconds. 29 already precompiled. Precompiling packages... 2963.4 ms ✓ FiniteDifferences 1 dependency successfully precompiled in 3 seconds. 18 already precompiled. Precompiling packages... 1781.1 ms ✓ StructArrays → StructArraysStaticArraysExt 7250.2 ms ✓ KernelAbstractions 8640.7 ms ✓ ForwardDiff 4109.1 ms ✓ KernelAbstractions → SparseArraysExt 3139.7 ms ✓ KernelAbstractions → LinearAlgebraExt 15258.2 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 3528.5 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 17799.8 ms ✓ GPUArrays 63813.5 ms ✓ Zygote 9 dependencies successfully precompiled in 127 seconds. 97 already precompiled. Precompiling packages... 11435.6 ms ✓ KernelAbstractions 3190.4 ms ✓ KernelAbstractions → SparseArraysExt 3608.4 ms ✓ KernelAbstractions → LinearAlgebraExt 3399.8 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 14892.9 ms ✓ GPUArrays 7228.4 ms ✓ Zygote → ZygoteDistancesExt 6 dependencies successfully precompiled in 45 seconds. 105 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#140` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 18m44.2s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1139s / 98.7% 28.9GiB / 99.1% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 724s 64.5% 724s 20.0GiB 69.8% 20.0GiB addition 1 401s 35.7% 401s 11.6GiB 40.3% 11.6GiB Standardised Tests (correlated sum) 1 222s 19.8% 222s 6.29GiB 22.0% 6.29GiB adj_ad 9 21.8s 1.9% 2.43s 0.99GiB 3.5% 113MiB adj_fd 9 8.66s 0.8% 962ms 308MiB 1.0% 34.2MiB Standardised Tests (independent sum) 1 132s 11.7% 132s 4.96GiB 17.3% 4.96GiB adj_ad 9 26.0s 2.3% 2.88s 1.21GiB 4.2% 138MiB adj_fd 9 10.7s 1.0% 1.19s 292MiB 1.0% 32.4MiB Correlated GPs 1 44.3s 3.9% 44.3s 271MiB 0.9% 271MiB Consistency Tests 1 17.9s 1.6% 17.9s 117MiB 0.4% 117MiB Verify mean / kernel numerically 1 2.90s 0.3% 2.90s 39.3MiB 0.1% 39.3MiB Consistency Tests 1 1.59s 0.1% 1.59s 12.2MiB 0.0% 12.2MiB product 1 151s 13.4% 151s 3.88GiB 13.5% 3.88GiB multiply by function 1 89.5s 8.0% 89.5s 2.07GiB 7.2% 2.07GiB Diff Tests 1 50.5s 4.5% 50.5s 1.56GiB 5.5% 1.56GiB adj_ad 9 19.9s 1.8% 2.21s 861MiB 2.9% 95.7MiB adj_fd 9 6.00s 0.5% 666ms 110MiB 0.4% 12.2MiB Consistency Tests 1 5.91s 0.5% 5.91s 100MiB 0.3% 100MiB multiply by constant 1 61.5s 5.5% 61.5s 1.81GiB 6.3% 1.81GiB Diff Tests 1 47.1s 4.2% 47.1s 1.76GiB 6.1% 1.76GiB adj_ad 9 15.4s 1.4% 1.71s 787MiB 2.7% 87.4MiB adj_fd 9 10.6s 0.9% 1.18s 285MiB 1.0% 31.7MiB Consistency Tests 1 3.78s 0.3% 3.78s 17.3MiB 0.1% 17.3MiB GP mul errors 1 11.5ms 0.0% 11.5ms 40.5KiB 0.0% 40.5KiB compose 1 82.8s 7.4% 82.8s 2.36GiB 8.3% 2.36GiB general 1 51.0s 4.5% 51.0s 1.54GiB 5.4% 1.54GiB Diff Tests 1 45.3s 4.0% 45.3s 1.49GiB 5.2% 1.49GiB adj_ad 9 14.0s 1.2% 1.55s 727MiB 2.5% 80.8MiB adj_fd 9 5.69s 0.5% 632ms 109MiB 0.4% 12.1MiB Consistency Tests 1 4.26s 0.4% 4.26s 34.0MiB 0.1% 34.0MiB Stretch 1 26.3s 2.3% 26.3s 740MiB 2.5% 740MiB scalar stretch 1 25.5s 2.3% 25.5s 727MiB 2.5% 727MiB scalar input 1 24.6s 2.2% 24.6s 724MiB 2.5% 724MiB adj_fd 9 8.95s 0.8% 995ms 274MiB 0.9% 30.4MiB adj_ad 9 3.16s 0.3% 351ms 139MiB 0.5% 15.4MiB vector input 1 876ms 0.1% 876ms 3.18MiB 0.0% 3.18MiB Vector stretch 1 731ms 0.1% 731ms 9.71MiB 0.0% 9.71MiB Matrix stretch 1 140ms 0.0% 140ms 2.96MiB 0.0% 2.96MiB Shift 1 2.85s 0.3% 2.85s 39.1MiB 0.1% 39.1MiB Shift{Float64} 1 1.46s 0.1% 1.46s 25.1MiB 0.1% 25.1MiB Shift{Vector{Float64}} 1 1.40s 0.1% 1.40s 14.0MiB 0.0% 14.0MiB Select 1 1.64s 0.1% 1.64s 31.6MiB 0.1% 31.6MiB evaluation 1 733ms 0.1% 733ms 20.1MiB 0.1% 20.1MiB idx isa Vector 1 529ms 0.0% 529ms 7.63MiB 0.0% 7.63MiB idx isa Integer 1 376ms 0.0% 376ms 3.87MiB 0.0% 3.87MiB Periodic 1 984ms 0.1% 984ms 32.8MiB 0.1% 32.8MiB cross 1 31.0s 2.8% 31.0s 1.40GiB 4.9% 1.40GiB block arrays 1 16.7s 1.5% 16.7s 781MiB 2.7% 781MiB Stheno._collect ∘ _mortar 1 14.0s 1.2% 14.0s 657MiB 2.2% 657MiB BlockMatrix 1 7.40s 0.7% 7.40s 363MiB 1.2% 363MiB adj_fd 1 961ms 0.1% 961ms 111MiB 0.4% 111MiB adj_ad 1 58.7ms 0.0% 58.7ms 2.35MiB 0.0% 2.35MiB BlockVector 1 6.58s 0.6% 6.58s 293MiB 1.0% 293MiB adj_fd 1 820ms 0.1% 820ms 12.1MiB 0.0% 12.1MiB adj_ad 1 210ms 0.0% 210ms 15.5MiB 0.1% 15.5MiB fdm stuff 1 2.75s 0.2% 2.75s 124MiB 0.4% 124MiB Correctness tests 1 8.52s 0.8% 8.52s 424MiB 1.4% 424MiB Standardised Tests 1 5.78s 0.5% 5.78s 231MiB 0.8% 231MiB gp 1 184s 16.4% 184s 4.47GiB 15.6% 4.47GiB adj_ad 2 21.1s 1.9% 10.6s 827MiB 2.8% 413MiB sparse gp 1 20.6s 1.8% 20.6s 399MiB 1.4% 399MiB SparseFiniteGP inference 1 14.9s 1.3% 14.9s 265MiB 0.9% 265MiB SparseFiniteGP methods 1 5.29s 0.5% 5.29s 130MiB 0.4% 130MiB SparseFiniteGP Constructors 1 390ms 0.0% 390ms 4.09MiB 0.0% 4.09MiB gp 1 18.4s 1.6% 18.4s 362MiB 1.2% 362MiB GP 1 18.0s 1.6% 18.0s 359MiB 1.2% 359MiB independent GPs 1 322ms 0.0% 322ms 2.57MiB 0.0% 2.57MiB wrapped AbstractGP 1 13.2ms 0.0% 13.2ms 287KiB 0.0% 287KiB adj_fd 2 2.58s 0.2% 1.29s 40.6MiB 0.1% 20.3MiB derived_gp 1 194μs 0.0% 194μs 1.92KiB 0.0% 1.92KiB gaussian_process_probabilistic_programme 1 138s 12.3% 138s 2.23GiB 7.8% 2.23GiB Zygote 1 28.5s 2.5% 28.5s 0.97GiB 3.4% 0.97GiB nested gppp 1 15.5s 1.4% 15.5s 83.6MiB 0.3% 83.6MiB External Consistency 1 13.9s 1.2% 13.9s 91.8MiB 0.3% 91.8MiB split 1 608ms 0.1% 608ms 11.6MiB 0.0% 11.6MiB gppp macro 1 58.7ms 0.0% 58.7ms 568KiB 0.0% 568KiB doctests 1 72.6s 6.5% 72.6s 1.69GiB 5.9% 1.69GiB BlockData 1 4.83s 0.4% 4.83s 256MiB 0.9% 256MiB vcat(::GPPPInput...) 1 1.21s 0.1% 1.21s 92.9MiB 0.3% 92.9MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1334.44s PkgEval succeeded after 1410.6s