Package evaluation of ReactionDiffusion on Julia 1.13.0-DEV.1099 (5c93bf20fd*) started at 2025-09-10T06:04:59.135


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# Set-up
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Installing PkgEval dependencies (TestEnv)...

Set-up completed after 10.7s


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# Installation
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Installing ReactionDiffusion...
   Resolving package versions...
   Installed MKL_jll ───────────────────────────── v2025.2.0+0
   Installed Glob ──────────────────────────────── v1.3.1
   Installed CommonWorldInvalidations ──────────── v1.0.0
   Installed FastPower ─────────────────────────── v1.1.3
   Installed SymbolicUtils ─────────────────────── v3.32.0
   Installed AlmostBlockDiagonals ──────────────── v0.1.10
   Installed Optim ─────────────────────────────── v1.13.2
   Installed Sundials ──────────────────────────── v4.28.0
   Installed SIMDTypes ─────────────────────────── v0.1.0
   Installed OrderedCollections ────────────────── v1.8.1
   Installed Functors ──────────────────────────── v0.5.2
   Installed PreallocationTools ────────────────── v0.4.34
   Installed OrdinaryDiffEqRosenbrock ──────────── v1.17.0
   Installed BoundaryValueDiffEqShooting ───────── v1.9.0
   Installed EnzymeCore ────────────────────────── v0.8.13
   Installed CpuId ─────────────────────────────── v0.3.1
   Installed Distances ─────────────────────────── v0.10.12
   Installed OrdinaryDiffEqExponentialRK ───────── v1.8.0
   Installed NonlinearSolveSpectralMethods ─────── v1.3.0
   Installed DispatchDoctor ────────────────────── v0.4.26
   Installed OrdinaryDiffEqFIRK ────────────────── v1.16.0
   Installed StaticArrayInterface ──────────────── v1.8.0
   Installed BoundaryValueDiffEqFIRK ───────────── v1.9.0
   Installed FileIO ────────────────────────────── v1.17.0
   Installed NaNMath ───────────────────────────── v1.1.3
   Installed OpenSpecFun_jll ───────────────────── v0.5.6+0
   Installed QuadGK ────────────────────────────── v2.11.2
   Installed DiffEqCallbacks ───────────────────── v4.9.0
   Installed DynamicQuantities ─────────────────── v1.8.0
   Installed FastBroadcast ─────────────────────── v0.3.5
   Installed NonlinearSolveBase ────────────────── v1.14.0
   Installed SCCNonlinearSolve ─────────────────── v1.4.0
   Installed BoundaryValueDiffEqMIRKN ──────────── v1.8.0
   Installed ScopedValues ──────────────────────── v1.5.0
   Installed OrdinaryDiffEqQPRK ────────────────── v1.4.0
   Installed EnumX ─────────────────────────────── v1.0.5
   Installed Tables ────────────────────────────── v1.12.1
   Installed JumpProcesses ─────────────────────── v9.18.0
   Installed LinearSolve ───────────────────────── v3.40.0
   Installed JuliaFormatter ────────────────────── v1.0.62
   Installed BracketingNonlinearSolve ──────────── v1.3.0
   Installed DiffEqBase ────────────────────────── v6.188.0
   Installed NLSolversBase ─────────────────────── v7.10.0
   Installed InverseFunctions ──────────────────── v0.1.17
   Installed OrdinaryDiffEqLowOrderRK ──────────── v1.6.0
   Installed Reexport ──────────────────────────── v1.2.2
   Installed Missings ──────────────────────────── v1.2.0
   Installed Static ────────────────────────────── v1.2.0
   Installed Jieko ─────────────────────────────── v0.2.1
   Installed BandedMatrices ────────────────────── v1.9.4
   Installed Preferences ───────────────────────── v1.5.0
   Installed NonlinearSolve ────────────────────── v4.10.0
   Installed MaybeInplace ──────────────────────── v0.1.4
   Installed TableTraits ───────────────────────── v1.0.1
   Installed LaTeXStrings ──────────────────────── v1.4.0
   Installed Crayons ───────────────────────────── v4.1.1
   Installed SortingAlgorithms ─────────────────── v1.2.2
   Installed OrdinaryDiffEqNordsieck ───────────── v1.4.0
   Installed OrdinaryDiffEqAdamsBashforthMoulton ─ v1.5.0
   Installed Format ────────────────────────────── v1.3.7
   Installed RecursiveArrayTools ───────────────── v3.37.1
   Installed LevyArea ──────────────────────────── v1.0.0
   Installed OrdinaryDiffEqLinear ──────────────── v1.6.0
   Installed UnPack ────────────────────────────── v1.0.2
   Installed ADTypes ───────────────────────────── v1.17.0
   Installed MLStyle ───────────────────────────── v0.4.17
   Installed Inflate ───────────────────────────── v0.1.5
   Installed DataStructures ────────────────────── v0.18.22
   Installed MacroTools ────────────────────────── v0.5.16
   Installed DiffResults ───────────────────────── v1.1.0
   Installed URIs ──────────────────────────────── v1.6.1
   Installed TermInterface ─────────────────────── v2.0.0
   Installed GenericSchur ──────────────────────── v0.5.5
   Installed ManualMemory ──────────────────────── v0.1.8
   Installed Catalyst ──────────────────────────── v14.4.1
   Installed FillArrays ────────────────────────── v1.13.0
   Installed AbstractTrees ─────────────────────── v0.4.5
   Installed Tricks ────────────────────────────── v0.1.12
   Installed oneTBB_jll ────────────────────────── v2022.0.0+0
   Installed ExprTools ─────────────────────────── v0.1.10
   Installed SparseMatrixColorings ─────────────── v0.4.21
   Installed ArnoldiMethod ─────────────────────── v0.4.0
   Installed StatsBase ─────────────────────────── v0.34.6
   Installed IntelOpenMP_jll ───────────────────── v2025.2.0+0
   Installed ArrayInterface ────────────────────── v7.20.0
   Installed SciMLJacobianOperators ────────────── v0.1.11
   Installed DataValueInterfaces ───────────────── v1.0.0
   Installed CEnum ─────────────────────────────── v0.5.0
   Installed CommonSubexpressions ──────────────── v0.3.1
   Installed RandomNumbers ─────────────────────── v1.6.0
   Installed LayoutPointers ────────────────────── v0.1.17
   Installed GPUArraysCore ─────────────────────── v0.2.0
   Installed TruncatedStacktraces ──────────────── v1.4.0
   Installed IrrationalConstants ───────────────── v0.2.4
   Installed ConcreteStructs ───────────────────── v0.2.3
   Installed IntegerMathUtils ──────────────────── v0.1.3
   Installed BoundaryValueDiffEq ───────────────── v5.18.0
   Installed SimpleTraits ──────────────────────── v0.9.5
   Installed SparseConnectivityTracer ──────────── v1.0.1
   Installed ArrayLayouts ──────────────────────── v1.11.2
   Installed CompositeTypes ────────────────────── v0.1.4
   Installed Setfield ──────────────────────────── v1.1.2
   Installed OrdinaryDiffEqRKN ─────────────────── v1.5.0
   Installed OrdinaryDiffEqExtrapolation ───────── v1.9.0
   Installed BlockArrays ───────────────────────── v1.7.2
   Installed OrdinaryDiffEqStabilizedIRK ───────── v1.6.0
   Installed PDMats ────────────────────────────── v0.11.35
   Installed OrdinaryDiffEqPRK ─────────────────── v1.4.0
   Installed NonlinearSolveQuasiNewton ─────────── v1.8.0
   Installed SteadyStateDiffEq ─────────────────── v2.5.0
   Installed DocStringExtensions ───────────────── v0.9.5
   Installed Moshi ─────────────────────────────── v0.3.7
   Installed DifferentiationInterface ──────────── v0.7.7
   Installed ResettableStacks ──────────────────── v1.1.1
   Installed CompositionsBase ──────────────────── v0.1.2
   Installed FindFirstFunctions ────────────────── v1.4.1
   Installed CommonSolve ───────────────────────── v0.2.4
   Installed Rmath_jll ─────────────────────────── v0.5.1+0
   Installed OrdinaryDiffEqHighOrderRK ─────────── v1.5.0
   Installed ForwardDiff ───────────────────────── v0.10.38
   Installed SimpleUnPack ──────────────────────── v1.1.0
   Installed Ghostscript_jll ───────────────────── v9.55.1+0
   Installed Bijections ────────────────────────── v0.2.2
   Installed Unityper ──────────────────────────── v0.1.6
   Installed Sundials_jll ──────────────────────── v5.2.3+0
   Installed AliasTables ───────────────────────── v1.1.3
   Installed OrdinaryDiffEqStabilizedRK ────────── v1.4.0
   Installed BitTwiddlingConvenienceFunctions ──── v0.1.6
   Installed DynamicPolynomials ────────────────── v0.6.3
   Installed HashArrayMappedTries ──────────────── v0.2.0
   Installed LineSearch ────────────────────────── v0.1.4
   Installed BoundaryValueDiffEqMIRK ───────────── v1.9.0
   Installed Combinatorics ─────────────────────── v1.0.2
   Installed IteratorInterfaceExtensions ───────── v1.0.0
   Installed FunctionWrappersWrappers ──────────── v0.1.3
   Installed DomainSets ────────────────────────── v0.7.16
   Installed RecipesBase ───────────────────────── v1.3.4
   Installed SciMLOperators ────────────────────── v1.7.1
   Installed DataAPI ───────────────────────────── v1.16.0
   Installed OrdinaryDiffEq ────────────────────── v6.102.1
   Installed SciMLStructures ───────────────────── v1.7.0
   Installed OrdinaryDiffEqBDF ─────────────────── v1.10.1
   Installed Tokenize ──────────────────────────── v0.5.29
   Installed OrdinaryDiffEqSymplecticRK ────────── v1.7.0
   Installed StaticArrays ──────────────────────── v1.9.15
   Installed Krylov ────────────────────────────── v0.10.1
   Installed FastGaussQuadrature ───────────────── v1.0.2
   Installed TaskLocalValues ───────────────────── v0.1.3
   Installed StaticArraysCore ──────────────────── v1.4.3
   Installed MultivariatePolynomials ───────────── v0.5.9
   Installed SciMLPublic ───────────────────────── v1.0.0
   Installed Requires ──────────────────────────── v1.3.1
   Installed OrdinaryDiffEqLowStorageRK ────────── v1.7.0
   Installed Latexify ──────────────────────────── v0.16.10
   Installed Symbolics ─────────────────────────── v6.54.0
   Installed FunctionWrappers ──────────────────── v1.1.3
   Installed LogExpFunctions ───────────────────── v0.3.29
   Installed DiffRules ─────────────────────────── v1.15.1
   Installed OrdinaryDiffEqDifferentiation ─────── v1.16.0
   Installed OrdinaryDiffEqNonlinearSolve ──────── v1.14.1
   Installed ReactionDiffusion ─────────────────── v0.1.10
   Installed DifferentialEquations ─────────────── v7.16.1
   Installed OrdinaryDiffEqCore ────────────────── v1.33.0
   Installed SciMLBase ─────────────────────────── v2.117.1
   Installed Distributions ─────────────────────── v0.25.120
   Installed Rmath ─────────────────────────────── v0.8.0
   Installed FiniteDiff ────────────────────────── v2.28.1
   Installed NonlinearSolveFirstOrder ──────────── v1.7.0
   Installed FastClosures ──────────────────────── v0.3.2
   Installed CloseOpenIntervals ────────────────── v0.1.13
   Installed OrdinaryDiffEqExplicitRK ──────────── v1.4.0
   Installed Polyester ─────────────────────────── v0.7.18
   Installed StatsFuns ─────────────────────────── v1.5.0
   Installed Unitful ───────────────────────────── v1.24.0
   Installed BoundaryValueDiffEqAscher ─────────── v1.8.0
   Installed BoundaryValueDiffEqCore ───────────── v1.11.1
   Installed MutableArithmetics ────────────────── v1.6.4
   Installed JLLWrappers ───────────────────────── v1.7.1
   Installed TestItems ─────────────────────────── v1.0.0
   Installed OrdinaryDiffEqFeagin ──────────────── v1.4.0
   Installed SymbolicLimits ────────────────────── v0.2.2
   Installed Primes ────────────────────────────── v0.5.7
   Installed OrdinaryDiffEqIMEXMultistep ───────── v1.7.0
   Installed ThreadingUtilities ────────────────── v0.5.5
   Installed OrdinaryDiffEqSSPRK ───────────────── v1.7.0
   Installed OrdinaryDiffEqPDIRK ───────────────── v1.6.0
   Installed Accessors ─────────────────────────── v0.1.42
   Installed OrdinaryDiffEqSDIRK ───────────────── v1.7.0
   Installed JpegTurbo_jll ─────────────────────── v3.1.3+0
   Installed OrdinaryDiffEqDefault ─────────────── v1.8.0
   Installed Graphs ────────────────────────────── v1.13.1
   Installed JLD2 ──────────────────────────────── v0.5.15
   Installed RuntimeGeneratedFunctions ─────────── v0.5.15
   Installed Adapt ─────────────────────────────── v4.3.0
   Installed ConstructionBase ──────────────────── v1.6.0
   Installed OrdinaryDiffEqVerner ──────────────── v1.6.0
   Installed ExponentialUtilities ──────────────── v1.27.0
   Installed HypergeometricFunctions ───────────── v0.3.28
   Installed PoissonRandom ─────────────────────── v0.4.6
   Installed CSTParser ─────────────────────────── v3.4.3
   Installed SymbolicIndexingInterface ─────────── v0.3.43
   Installed Random123 ─────────────────────────── v1.7.1
   Installed FastAlmostBandedMatrices ──────────── v0.1.5
   Installed StrideArraysCore ──────────────────── v0.5.8
   Installed Compat ────────────────────────────── v4.18.0
   Installed PositiveFactorizations ────────────── v0.2.4
   Installed TranscodingStreams ────────────────── v0.11.3
   Installed Statistics ────────────────────────── v1.11.1
   Installed StochasticDiffEq ──────────────────── v6.82.0
   Installed ModelingToolkit ───────────────────── v9.68.1
   Installed StatsAPI ──────────────────────────── v1.7.1
   Installed ProgressMeter ─────────────────────── v1.11.0
   Installed TimerOutputs ──────────────────────── v0.5.29
   Installed StructArrays ──────────────────────── v0.7.1
   Installed OffsetArrays ──────────────────────── v1.17.0
   Installed PrecompileTools ───────────────────── v1.3.3
   Installed LazyArrays ────────────────────────── v2.6.2
   Installed ExproniconLite ────────────────────── v0.10.14
   Installed CPUSummary ────────────────────────── v0.2.7
   Installed IfElse ────────────────────────────── v0.1.1
   Installed ChainRulesCore ────────────────────── v1.26.0
   Installed Parameters ────────────────────────── v0.12.3
   Installed DiffEqNoiseProcess ────────────────── v5.24.1
   Installed NLsolve ───────────────────────────── v4.5.1
   Installed MatrixFactorizations ──────────────── v3.0.1
   Installed MuladdMacro ───────────────────────── v0.2.4
   Installed PtrArrays ─────────────────────────── v1.3.0
   Installed DelayDiffEq ───────────────────────── v5.60.0
   Installed IntervalSets ──────────────────────── v0.7.11
   Installed SimpleNonlinearSolve ──────────────── v2.7.0
   Installed SpecialFunctions ──────────────────── v2.5.1
   Installed LineSearches ──────────────────────── v7.4.0
   Installed PolyesterWeave ────────────────────── v0.2.2
   Installed CommonMark ────────────────────────── v0.8.16
   Installed OrdinaryDiffEqTsit5 ───────────────── v1.5.0
   Installed OrdinaryDiffEqFunctionMap ─────────── v1.5.0
  Installing 6 artifacts
   Installed artifact OpenSpecFun 194.9 KiB
   Installed artifact Rmath       121.9 KiB
   Installed artifact oneTBB      435.6 KiB
   Installed artifact JpegTurbo   1.4 MiB
   Installed artifact Sundials    2.1 MiB
   Installed artifact Ghostscript 31.4 MiB
    Updating `~/.julia/environments/v1.13/Project.toml`
  [dcda7c7e] + ReactionDiffusion v0.1.10
    Updating `~/.julia/environments/v1.13/Manifest.toml`
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  [66dad0bd] + AliasTables v1.1.3
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  [ec485272] + ArnoldiMethod v0.4.0
  [4fba245c] + ArrayInterface v7.20.0
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  [e2ed5e7c] + Bijections v0.2.2
  [62783981] + BitTwiddlingConvenienceFunctions v0.1.6
  [8e7c35d0] + BlockArrays v1.7.2
  [764a87c0] + BoundaryValueDiffEq v5.18.0
  [7227322d] + BoundaryValueDiffEqAscher v1.8.0
  [56b672f2] + BoundaryValueDiffEqCore v1.11.1
  [85d9eb09] + BoundaryValueDiffEqFIRK v1.9.0
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  [9255f1d6] + BoundaryValueDiffEqMIRKN v1.8.0
  [ed55bfe0] + BoundaryValueDiffEqShooting v1.9.0
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⌅ [479239e8] + Catalyst v14.4.1
  [d360d2e6] + ChainRulesCore v1.26.0
  [fb6a15b2] + CloseOpenIntervals v0.1.13
⌅ [861a8166] + Combinatorics v1.0.2
⌅ [a80b9123] + CommonMark v0.8.16
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⌅ [864edb3b] + DataStructures v0.18.22
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⌅ [033835bb] + JLD2 v0.5.15
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        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 18.9s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
   4686.3 ms  ✓ TestEnv
  1 dependency successfully precompiled in 5 seconds. 27 already precompiled.

Precompiling package dependencies...

======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile.
--trace-compile is enabled during profile collection.
======================================================================================

cmd: /opt/julia/bin/julia 251 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
wait at ./task.jl:1200
wait_forever at ./task.jl:1137
jfptr_wait_forever_61890.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4045 [inlined]
ijl_apply_generic at /source/src/gf.c:4258
jl_apply at /source/src/julia.h:2382 [inlined]
start_task at /source/src/task.c:1253
unknown function (ip: (nil)) at (unknown file)


==============================================================
Profile collected. A report will print at the next yield point.
Disabling --trace-compile
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362
Overhead ╎ [+additional indent] Count File:Line  Function
=========================================================
Thread 1 (default) Task 0x00007628de259a50 Total snapshots: 420. Utilization: 0%
   ╎420 @Base/task.jl:1137  wait_forever()
419╎ 420 @Base/task.jl:1200  wait()


======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile.
--trace-compile is enabled during profile collection.
======================================================================================

cmd: /opt/julia/bin/julia 1 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
wait at ./task.jl:1200
wait_forever at ./task.jl:1137
jfptr_wait_forever_61890.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4045 [inlined]
ijl_apply_generic at /source/src/gf.c:4258
jl_apply at /source/src/julia.h:2382 [inlined]
start_task at /source/src/task.c:1253
unknown function (ip: (nil)) at (unknown file)


==============================================================
Profile collected. A report will print at the next yield point.
Disabling --trace-compile
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362
Overhead ╎ [+additional indent] Count File:Line  Function
=========================================================
Thread 1 (default) Task 0x0000769a642f83d0 Total snapshots: 478. Utilization: 0%
   ╎478 @Base/task.jl:1137  wait_forever()
477╎ 478 @Base/task.jl:1200  wait()


[251] signal 15: Terminated
in expression starting at /PkgEval.jl/scripts/precompile.jl:37
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
wait at ./task.jl:1200
wait_forever at ./task.jl:1137
jfptr_wait_forever_61890.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4045 [inlined]
ijl_apply_generic at /source/src/gf.c:4258
jl_apply at /source/src/julia.h:2382 [inlined]
start_task at /source/src/task.c:1253
unknown function (ip: (nil)) at (unknown file)
Allocations: 11942489 (Pool: 11941286; Big: 1203); GC: 16

PkgEval terminated after 2731.08s: test duration exceeded the time limit