Package evaluation of ClimateModels on Julia 1.13.0-DEV.1095 (0679da10f9*) started at 2025-09-07T20:52:13.397 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.43s ################################################################################ # Installation # Installing ClimateModels... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [f6adb021] + ClimateModels v0.3.9 Updating `~/.julia/environments/v1.13/Manifest.toml` [d1d4a3ce] + BitFlags v0.1.9 [179af706] + CFTime v0.2.3 [336ed68f] + CSV v0.10.15 [0b6fb165] + ChunkCodecCore v1.0.0 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [f6adb021] + ClimateModels v0.3.9 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.18.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [124859b0] + DataDeps v0.7.13 [a93c6f00] + DataFrames v1.7.1 [864edb3b] + DataStructures v0.19.1 [e2d170a0] + DataValueInterfaces v1.0.0 [9c0b9be8] + Dataverse v0.2.7 [460bff9d] + ExceptionUnwrapping v0.1.11 [5789e2e9] + FileIO v1.17.0 [48062228] + FilePathsBase v0.9.24 [d7ba0133] + Git v1.5.0 [c27321d9] + Glob v1.3.1 [cd3eb016] + HTTP v1.10.17 [076d061b] + HashArrayMappedTries v0.2.0 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.6.1 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [e6f89c97] + LoggingExtras v1.1.0 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.9 [e1d29d7a] + Missings v1.2.0 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.5.0 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 ⌅ [08abe8d2] + PrettyTables v2.4.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e506255] + ScopedValues v1.5.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.2 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.1 [fd094767] + Suppressor v0.2.8 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [a5390f91] + ZipFile v0.10.1 [2e619515] + Expat_jll v2.7.1+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.51.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.6+2 [9bd350c2] + OpenSSH_jll v10.0.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.8.12 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.67.0+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.76s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:76 Precompiling package dependencies... Precompilation completed after 2522.21s ################################################################################ # Testing # Testing ClimateModels ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 1 of 1 signal (10): User defined signal 1 _ZN12_GLOBAL__N_114MachineCSEImpl16PerformSimplePREEPN4llvm20MachineDominatorTreeE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_114MachineCSEImpl3runERN4llvm15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_116MachineCSELegacy20runOnMachineFunctionERN4llvm15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1612 addModule at /source/src/jitlayers.cpp:2093 jl_compile_codeinst_now at /source/src/jitlayers.cpp:682 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:873 jl_compile_method_internal at /source/src/gf.c:3595 _jl_invoke at /source/src/gf.c:4053 [inlined] ijl_apply_generic at /source/src/gf.c:4258 #204 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2370 #mktempdir#21 at ./file.jl:899 unknown function (ip: 0x721b78b80371) at (unknown file) _jl_invoke at /source/src/gf.c:4061 [inlined] ijl_apply_generic at /source/src/gf.c:4258 mktempdir at ./file.jl:895 mktempdir at ./file.jl:895 #sandbox#200 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2352 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2342 unknown function (ip: 0x721b78b75a31) at (unknown file) _jl_invoke at /source/src/gf.c:4061 [inlined] ijl_apply_generic at /source/src/gf.c:4258 #test#211 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2616 test at /source/usr/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2522 [inlined] #test#170 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 test at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 unknown function (ip: 0x721b78b75681) at (unknown file) _jl_invoke at /source/src/gf.c:4061 [inlined] ijl_apply_generic at /source/src/gf.c:4258 #test#84 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 unknown function (ip: 0x721b78b7384a) at (unknown file) _jl_invoke at /source/src/gf.c:4061 [inlined] ijl_apply_generic at /source/src/gf.c:4258 test at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 #test#82 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 test at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [inlined] test at /source/usr/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 unknown function (ip: 0x721b78b6a459) at (unknown file) _jl_invoke at /source/src/gf.c:4061 [inlined] ijl_apply_generic at /source/src/gf.c:4258 jl_apply at /source/src/julia.h:2382 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:690 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:772 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 include_string at ./loading.jl:2918 _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 _include at ./loading.jl:2978 include at ./Base.jl:308 exec_options at ./client.jl:330 _start at ./client.jl:563 jfptr__start_57286.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4045 [inlined] ijl_apply_generic at /source/src/gf.c:4258 jl_apply at /source/src/julia.h:2382 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x721b949a9249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000721b7abfc010 Total snapshots: 5. Utilization: 100% ╎5 @Base/client.jl:563 _start() ╎ 5 @Base/client.jl:330 exec_options(opts::Base.JLOptions) ╎ 5 @Base/Base.jl:308 include(mod::Module, _path::String) ╎ 5 @Base/loading.jl:2978 _include(mapexpr::Function, mod::Module, _path::S… ╎ 5 @Base/loading.jl:2918 include_string(mapexpr::typeof(identity), mod::M… ╎ 5 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 5 @Pkg/src/API.jl:155 kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(… ╎ ╎ 5 @Pkg/src/API.jl:155 #test#81 ╎ ╎ 5 @Pkg/src/API.jl:156 test ╎ ╎ 5 @Pkg/src/API.jl:156 test(pkgs::Vector{String}; kwargs::Base.Pairs… ╎ ╎ 5 @Pkg/src/API.jl:157 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ ╎ 5 @Pkg/src/API.jl:168 test(pkgs::Vector{PackageSpec}; io::IOConte… ╎ ╎ ╎ 5 @Pkg/src/API.jl:515 kwcall(::@NamedTuple{julia_args::Cmd, io::… ╎ ╎ ╎ 5 @Pkg/src/API.jl:538 test(ctx::Pkg.Types.Context, pkgs::Vector… ╎ ╎ ╎ 5 @Pkg/…Operations.jl:2522 test ╎ ╎ ╎ 5 @Pkg/…perations.jl:2616 test(ctx::Pkg.Types.Context, pkgs::… ╎ ╎ ╎ ╎ 5 @Pkg/…perations.jl:2342 kwcall(::@NamedTuple{preferences::… ╎ ╎ ╎ ╎ 5 @Pkg/…perations.jl:2352 #sandbox#200 ╎ ╎ ╎ ╎ 5 @Base/file.jl:895 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 5 @Base/file.jl:895 mktempdir(fn::Function, parent::Strin… ╎ ╎ ╎ ╎ 5 @Base/file.jl:899 mktempdir(fn::Pkg.Operations.var"#20… ╎ ╎ ╎ ╎ ╎ 5 @Pkg/…rations.jl:2405 (::Pkg.Operations.var"#204#205"… ╎ ╎ ╎ ╎ ╎ 5 @Pkg/…rations.jl:2292 with_temp_env(fn::Pkg.Operatio… ╎ ╎ ╎ ╎ ╎ 5 @Pkg/…ations.jl:2421 (::Pkg.Operations.var"#208#209… ╎ ╎ ╎ ╎ ╎ 5 @Pkg/…rc/API.jl:441 resolve ╎ ╎ ╎ ╎ ╎ 5 @Pkg/…rc/API.jl:442 #resolve#167 ╎ ╎ ╎ ╎ ╎ ╎ 5 @Pkg/…c/API.jl:173 up ╎ ╎ ╎ ╎ ╎ ╎ 5 @Pkg/…c/API.jl:173 #up#49 ╎ ╎ ╎ ╎ ╎ ╎ 5 @Pkg/…c/API.jl:406 up ╎ ╎ ╎ ╎ ╎ ╎ 5 @Pkg/…/API.jl:436 up(ctx::Pkg.Types.Context, … ╎ ╎ ╎ ╎ ╎ ╎ 5 @Pkg/…ons.jl:2072 up ╎ ╎ ╎ ╎ ╎ ╎ ╎ 5 @Pkg/…ons.jl:2098 up(ctx::Pkg.Types.Context… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 5 @Pkg/…ons.jl:597 resolve_versions!(env::Pk… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…ons.jl:726 deps_graph(env::Pkg.Type… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…nce.jl:186 registry_info ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…nce.jl:190 init_package_info!(pkg… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ck.jl:376 macro expansion ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…nce.jl:205 macro expansion ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ct.jl:94 Dict{VersionNumber, … ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ct.jl:358 setindex!(h::Dict{… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ct.jl:276 ht_keyindex2_shor… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 1 @Base/…ct.jl:129 hashindex 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +2 1 @Base/…ng.jl:34 hash ╎ ╎ ╎ ╎ ╎ ╎ ╎ 4 @Pkg/…ons.jl:756 deps_graph(env::Pkg.Type… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…ons.jl:732 (::Pkg.Operations.var"#… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…nce.jl:67 isyanked ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ct.jl:478 getindex ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ct.jl:238 ht_keyindex(h::Dict{… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…ons.jl:751 (::Pkg.Operations.var"#… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ct.jl:227 merge!(d::Dict{UUID, P… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ct.jl:194 sizehint! ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ct.jl:201 #sizehint!#306 ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ct.jl:151 rehash!(h::Dict{UUI… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:588 GenericMemory ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…ons.jl:752 (::Pkg.Operations.var"#… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…et.jl:105 union!(s::Set{UUID}, i… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ct.jl:713 iterate ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ct.jl:714 iterate ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ct.jl:690 skip_deleted ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ge.jl:923 iterate 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…on.jl:637 == ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…nce.jl:158 compat_info ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…nce.jl:108 initialize_uncompresse… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…nce.jl:113 initialize_uncompress… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…nce.jl:91 uncompress(compressed… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ct.jl:478 getindex ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ct.jl:248 ht_keyindex(h::Dic… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ct.jl:134 isslotempty 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 1 @Base/…on.jl:637 == [719] signal 15: Terminated in expression starting at none:0 jl_read_reloclist at /source/src/staticdata.c:2292 jl_restore_system_image_from_stream_ at /source/src/staticdata.c:4027 jl_restore_system_image_from_stream at /source/src/staticdata.c:4548 [inlined] ijl_restore_system_image at /source/src/staticdata.c:4587 _finish_jl_init_ at /source/src/init.c:585 ijl_init_ at /source/src/init.c:784 jl_repl_entrypoint at /source/src/jlapi.c:1131 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7308cd099249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 0 (Pool: 0; Big: 0); GC: 0 [719] signal 11 (1): Segmentation fault in expression starting at none:0 jl_smallintset_lookup at /source/src/smallintset.c:123 jl_get_module_binding at /source/src/module.c:1528 jl_get_global_value at /source/src/module.c:1583 ijl_atexit_hook at /source/src/init.c:251 jl_exit_thread0_cb at /source/src/signals-unix.c:564 Allocations: 0 (Pool: 0; Big: 0); GC: 0 [719] signal 11 (1): Segmentation fault in expression starting at none:0 jl_smallintset_lookup at /source/src/smallintset.c:123 jl_get_module_binding at /source/src/module.c:1528 jl_get_global_value at /source/src/module.c:1583 ijl_atexit_hook at /source/src/init.c:251 jl_exit_thread0_cb at /source/src/signals-unix.c:564 Allocations: 0 (Pool: 0; Big: 0); GC: 0 PkgEval terminated after 2732.04s: test duration exceeded the time limit