Package evaluation of SOCRATESSingleColumnForcings on Julia 1.13.0-DEV.1080 (ed57414aec*) started at 2025-09-04T19:39:19.098


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 10.46s


################################################################################
# Installation
#

Installing SOCRATESSingleColumnForcings...
   Resolving package versions...
    Updating `~/.julia/environments/v1.13/Project.toml`
  [efca6b66] + SOCRATESSingleColumnForcings v0.13.4
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [79e6a3ab] + Adapt v4.3.0
  [a9b6321e] + Atomix v1.1.2
⌅ [179af706] + CFTime v0.1.4
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.18.0
⌅ [864edb3b] + DataStructures v0.18.22
  [8bb1440f] + DelimitedFiles v1.9.1
  [39dd38d3] + Dierckx v0.5.4
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [ffbed154] + DocStringExtensions v0.9.5
⌅ [f6369f11] + ForwardDiff v0.10.38
  [92d709cd] + IrrationalConstants v0.2.4
  [692b3bcd] + JLLWrappers v1.7.1
  [63c18a36] + KernelAbstractions v0.9.38
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [3da0fdf6] + MPIPreferences v0.1.11
  [1914dd2f] + MacroTools v0.5.16
⌅ [85f8d34a] + NCDatasets v0.11.9
  [77ba4419] + NaNMath v1.1.3
  [b7351bd1] + NonNegLeastSquares v0.4.1
  [bac558e1] + OrderedCollections v1.8.1
  [afe20452] + PCHIPInterpolation v0.2.1
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [ae029012] + Requires v1.3.1
⌅ [7181ea78] + RootSolvers v0.4.6
  [efca6b66] + SOCRATESSingleColumnForcings v0.13.4
  [276daf66] + SpecialFunctions v2.5.1
  [90137ffa] + StaticArrays v1.9.15
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
⌅ [b60c26fb] + Thermodynamics v0.11.7
  [013be700] + UnsafeAtomics v0.3.0
  [0b7ba130] + Blosc_jll v1.21.7+0
  [6e34b625] + Bzip2_jll v1.0.9+0
  [cd4c43a9] + Dierckx_jll v0.2.0+0
⌅ [0234f1f7] + HDF5_jll v1.14.3+3
  [e33a78d0] + Hwloc_jll v2.12.2+0
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [5ced341a] + Lz4_jll v1.10.1+0
  [7cb0a576] + MPICH_jll v4.3.1+0
  [f1f71cc9] + MPItrampoline_jll v5.5.4+0
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
⌅ [7243133f] + NetCDF_jll v400.902.211+1
⌅ [fe0851c0] + OpenMPI_jll v4.1.8+1
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
⌅ [02c8fc9c] + XML2_jll v2.13.6+1
  [ffd25f8a] + XZ_jll v5.8.1+0
  [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0
  [477f73a3] + libaec_jll v1.1.4+0
  [337d8026] + libzip_jll v1.11.3+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.13.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.15.0+1
  [e37daf67] + LibGit2_jll v1.9.1+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.8.12
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [458c3c95] + OpenSSL_jll v3.5.2+0
  [efcefdf7] + PCRE2_jll v10.46.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.13.1+0
  [8e850ede] + nghttp2_jll v1.67.0+0
  [3f19e933] + p7zip_jll v17.6.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 10.06s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

┌ Warning: Could not use exact versions of packages in manifest, re-resolving
└ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:76
Precompiling package dependencies...

Precompilation completed after 63.57s


################################################################################
# Testing
#

     Testing SOCRATESSingleColumnForcings
        Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function.
    Updating `/tmp/jl_6MxgPz/Project.toml`
⌅ [6eacf6c3] + CLIMAParameters v0.7.26
⌅ [b60c26fb] ↓ Thermodynamics v0.11.7 ⇒ v0.11.2
  [8dfed614] ~ Test ⇒ v1.11.0
    Updating `/tmp/jl_6MxgPz/Manifest.toml`
⌅ [6eacf6c3] + CLIMAParameters v0.7.26
⌅ [b60c26fb] ↓ Thermodynamics v0.11.7 ⇒ v0.11.2
  [8dfed614] ~ Test ⇒ v1.11.0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
        Test Successfully re-resolved
      Status `/tmp/jl_6MxgPz/Project.toml`
⌅ [6eacf6c3] CLIMAParameters v0.7.26
  [efca6b66] SOCRATESSingleColumnForcings v0.13.4
⌅ [b60c26fb] Thermodynamics v0.11.2
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_6MxgPz/Manifest.toml`
  [79e6a3ab] Adapt v4.3.0
  [a9b6321e] Atomix v1.1.2
⌅ [179af706] CFTime v0.1.4
⌅ [6eacf6c3] CLIMAParameters v0.7.26
  [bbf7d656] CommonSubexpressions v0.3.1
  [34da2185] Compat v4.18.0
⌅ [864edb3b] DataStructures v0.18.22
  [8bb1440f] DelimitedFiles v1.9.1
  [39dd38d3] Dierckx v0.5.4
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [ffbed154] DocStringExtensions v0.9.5
⌅ [f6369f11] ForwardDiff v0.10.38
  [92d709cd] IrrationalConstants v0.2.4
  [692b3bcd] JLLWrappers v1.7.1
  [63c18a36] KernelAbstractions v0.9.38
  [2ab3a3ac] LogExpFunctions v0.3.29
  [3da0fdf6] MPIPreferences v0.1.11
  [1914dd2f] MacroTools v0.5.16
⌅ [85f8d34a] NCDatasets v0.11.9
  [77ba4419] NaNMath v1.1.3
  [b7351bd1] NonNegLeastSquares v0.4.1
  [bac558e1] OrderedCollections v1.8.1
  [afe20452] PCHIPInterpolation v0.2.1
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.0
  [ae029012] Requires v1.3.1
⌅ [7181ea78] RootSolvers v0.4.6
  [efca6b66] SOCRATESSingleColumnForcings v0.13.4
  [276daf66] SpecialFunctions v2.5.1
  [90137ffa] StaticArrays v1.9.15
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
⌅ [b60c26fb] Thermodynamics v0.11.2
  [013be700] UnsafeAtomics v0.3.0
  [0b7ba130] Blosc_jll v1.21.7+0
  [6e34b625] Bzip2_jll v1.0.9+0
  [cd4c43a9] Dierckx_jll v0.2.0+0
⌅ [0234f1f7] HDF5_jll v1.14.3+3
  [e33a78d0] Hwloc_jll v2.12.2+0
  [94ce4f54] Libiconv_jll v1.18.0+0
  [5ced341a] Lz4_jll v1.10.1+0
  [7cb0a576] MPICH_jll v4.3.1+0
  [f1f71cc9] MPItrampoline_jll v5.5.4+0
  [9237b28f] MicrosoftMPI_jll v10.1.4+3
⌅ [7243133f] NetCDF_jll v400.902.211+1
⌅ [fe0851c0] OpenMPI_jll v4.1.8+1
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
⌅ [02c8fc9c] XML2_jll v2.13.6+1
  [ffd25f8a] XZ_jll v5.8.1+0
  [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0
  [477f73a3] libaec_jll v1.1.4+0
  [337d8026] libzip_jll v1.11.3+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.13.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.15.0+1
  [e37daf67] LibGit2_jll v1.9.1+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.8.12
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.7+0
  [458c3c95] OpenSSL_jll v3.5.2+0
  [efcefdf7] PCRE2_jll v10.46.0+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [83775a58] Zlib_jll v1.3.1+2
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850b90] libblastrampoline_jll v5.13.1+0
  [8e850ede] nghttp2_jll v1.67.0+0
  [3f19e933] p7zip_jll v17.6.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
┌ Warning: If you're on HPC, you should set `export OPENBLAS_NUM_THREADS=1` in your environment, or use `LinearAlgebra.BLAS.set_num_threads(1)` in your code to avoid performance issues.
└ @ Main ~/.julia/packages/SOCRATESSingleColumnForcings/1CAlM/test/runtests.jl:8
[ Info: SOCRATESSingleColumnForcings version: 0.13.4
[ Info: CLIMAParameters version: 0.7.26
[ Info: Thermodynamics version: 0.11.2
[ Info: Testing combination 1/2304: flight_number=1, forcing_type=obs_data, initial_condition=false, surface=nothing, use_LES_output_for_z=false, return_old_z=false, conservative_interp=false, enforce_positivity=false
┌ Warning: Base.download is deprecated; use Downloads.download instead
│   caller = download_atlas_les_outputs(; cases::Vector{Int64}, forcing_type::Symbol) at download_atlas_les_profiles.jl:113
└ @ Core ~/.julia/packages/SOCRATESSingleColumnForcings/1CAlM/Data/Atlas_LES_Profiles/download_atlas_les_profiles.jl:113
┌ Warning: Did not find https://atmos.uw.edu/~ratlas/RF01_output/obs/SOCRATES_128x128_100m_10s_rad10_vg_M2005_aj.nc
└ @ SOCRATESSingleColumnForcings ~/.julia/packages/SOCRATESSingleColumnForcings/1CAlM/Data/Atlas_LES_Profiles/download_atlas_les_profiles.jl:116

SOCRATESSingleColumnForcings: Error During Test at /home/pkgeval/.julia/packages/SOCRATESSingleColumnForcings/1CAlM/test/runtests.jl:10
  Got exception outside of a @test
  MethodError: no method matching getindex(::Nothing, ::String)
  The function `getindex` exists, but no method is defined for this combination of argument types.
  Stacktrace:
    [1] process_case(flight_number::Int64; forcing_type::Symbol, new_z::Nothing, initial_condition::Bool, thermo_params::Thermodynamics.Parameters.ThermodynamicsParameters{Float64}, surface::Nothing, use_LES_output_for_z::Bool, return_old_z::Bool, fail_on_missing_data::Bool, conservative_interp::Bool, conservative_interp_kwargs::@NamedTuple{preserve_monotonicity::Bool, enforce_positivity::Bool, nnls_alg::Symbol, nnls_tol::Float64, enforce_conservation::Bool, integrate_method::Symbol})
      @ SOCRATESSingleColumnForcings ~/.julia/packages/SOCRATESSingleColumnForcings/1CAlM/src/process_case.jl:317
    [2] kwcall(::@NamedTuple{forcing_type::Symbol, thermo_params::Thermodynamics.Parameters.ThermodynamicsParameters{Float64}, new_z::Nothing, initial_condition::Bool, surface::Nothing, use_LES_output_for_z::Bool, return_old_z::Bool, conservative_interp::Bool, conservative_interp_kwargs::@NamedTuple{preserve_monotonicity::Bool, enforce_positivity::Bool, nnls_alg::Symbol, nnls_tol::Float64, enforce_conservation::Bool, integrate_method::Symbol}, fail_on_missing_data::Bool}, ::typeof(SOCRATESSingleColumnForcings.process_case), flight_number::Int64)
      @ SOCRATESSingleColumnForcings ~/.julia/packages/SOCRATESSingleColumnForcings/1CAlM/src/process_case.jl:20
    [3] macro expansion
      @ ~/.julia/packages/SOCRATESSingleColumnForcings/1CAlM/test/runtests.jl:91 [inlined]
    [4] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1952 [inlined]
    [5] top-level scope
      @ ~/.julia/packages/SOCRATESSingleColumnForcings/1CAlM/test/runtests.jl:11
    [6] include(mapexpr::Function, mod::Module, _path::String)
      @ Base ./Base.jl:309
    [7] top-level scope
      @ none:6
    [8] eval(m::Module, e::Any)
      @ Core ./boot.jl:489
    [9] exec_options(opts::Base.JLOptions)
      @ Base ./client.jl:296
   [10] _start()
      @ Base ./client.jl:563
Test Summary:                | Error  Total     Time
SOCRATESSingleColumnForcings |     1      1  1m10.6s
RNG of the outermost testset: Random.Xoshiro(0xe482a0fbed54b5f7, 0x1d2fa80d6dd1b08c, 0x9d05f17d88de8ea2, 0x7665a1d332418b16, 0x89f6bd5e42ed5e5f)
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/SOCRATESSingleColumnForcings/1CAlM/test/runtests.jl:10

Testing failed after 105.77s

ERROR: LoadError: Package SOCRATESSingleColumnForcings errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2673
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2522 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:308
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:330
 [14] _start()
    @ Base ./client.jl:563
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 212.63s: package tests unexpectedly errored