Package evaluation of PointNeighbors on Julia 1.13.0-DEV.1080 (ed57414aec*) started at 2025-09-04T14:57:51.569 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.87s ################################################################################ # Installation # Installing PointNeighbors... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [1c4d5385] + PointNeighbors v0.6.3 Updating `~/.julia/environments/v1.13/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [4fba245c] + ArrayInterface v7.20.0 [a9b6321e] + Atomix v1.1.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] + CPUSummary v0.2.7 [fb6a15b2] + CloseOpenIntervals v0.1.13 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.0 [adafc99b] + CpuId v0.3.1 [46192b85] + GPUArraysCore v0.2.0 [615f187c] + IfElse v0.1.1 [63c18a36] + KernelAbstractions v0.9.38 [10f19ff3] + LayoutPointers v0.1.17 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [1c4d5385] + PointNeighbors v0.6.3 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [94e857df] + SIMDTypes v0.1.0 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [7792a7ef] + StrideArraysCore v0.5.8 [8290d209] + ThreadingUtilities v0.5.5 [013be700] + UnsafeAtomics v0.3.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Installation completed after 3.94s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 815.34s ################################################################################ # Testing # Testing PointNeighbors Status `/tmp/jl_RkkW4p/Project.toml` [6e4b80f9] BenchmarkTools v1.6.0 [91a5bcdd] Plots v1.40.19 [1c4d5385] PointNeighbors v0.6.3 [66699cd8] TrixiParticles v0.3.1 [0a316866] TrixiTest v0.1.3 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_RkkW4p/Manifest.toml` [47edcb42] ADTypes v1.17.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.20.0 [a9b6321e] Atomix v1.1.2 [6e4b80f9] BenchmarkTools v1.6.0 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.15 [3cb15238] ChangePrecision v1.1.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.30.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [38540f10] 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Testing Running tests... Precompiling packages... 1531.5 ms ✓ StaticArrays → StaticArraysStatisticsExt 1 dependency successfully precompiled in 2 seconds. 9 already precompiled. WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in pushat!(PointNeighbors.DynamicVectorOfVectors{T, ARRAY2D, ARRAY1D, L} where L where ARRAY1D where ARRAY2D where T, Any, Any) at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/src/vector_of_vectors.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in var"#update_grid!#71"(Any, Any, typeof(PointNeighbors.update_grid!), Union{PointNeighbors.GridNeighborhoodSearch{var"#s6", PointNeighbors.SemiParallelUpdate, CL, ELTYPE, PB, UB} where UB where PB where ELTYPE where CL where var"#s6", PointNeighbors.GridNeighborhoodSearch{var"#s7", PointNeighbors.SerialIncrementalUpdate, CL, ELTYPE, PB, UB} where UB where PB where ELTYPE where CL where var"#s7"}, AbstractArray{T, 2} where T) at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/src/nhs_grid.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in push_cell!(PointNeighbors.FullGridCellList{C, LI, MINC, MAXC} where MAXC where MINC where LI where C, Any, Any) at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/src/cell_lists/full_grid.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in var"#initialize_grid!#66"(Any, Any, typeof(PointNeighbors.initialize_grid!), PointNeighbors.GridNeighborhoodSearch{var"#s7", PointNeighbors.ParallelUpdate, CL, ELTYPE, PB, UB} where UB where PB where ELTYPE where CL where var"#s7", AbstractArray{T, 2} where T) at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/src/nhs_grid.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in var"#update_grid!#76"(Any, Any, typeof(PointNeighbors.update_grid!), PointNeighbors.GridNeighborhoodSearch{var"#s109", PointNeighbors.ParallelIncrementalUpdate, CL, ELTYPE, PB, UB} where UB where PB where ELTYPE where CL where var"#s109", AbstractArray{T, 2} where T) at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/src/nhs_grid.jl Precompiling packages... 3272.4 ms ✓ BenchmarkTools 1 dependency successfully precompiled in 3 seconds. 16 already precompiled. Precompiling packages... 84920.6 ms ✓ DataFrames 4270.6 ms ✓ RecursiveArrayTools 2908.3 ms ✓ KernelAbstractions → EnzymeExt 16735.3 ms ✓ StrideArrays 1444.3 ms ✓ RecursiveArrayTools → RecursiveArrayToolsTablesExt 2799.6 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 2652.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsKernelAbstractionsExt 1821.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 40524.4 ms ✓ SciMLBase 6024.2 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 14034.7 ms ✓ DiffEqBase 6684.1 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 12383.2 ms ✓ DiffEqCallbacks 49895.2 ms ✓ TrixiParticles 14 dependencies successfully precompiled in 248 seconds. 184 already precompiled. WARNING: Method definition point_cloud(Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/test/point_cloud.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Main.point_cloud), Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/test/point_cloud.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition perturb!(Any, Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/test/point_cloud.jl:22 overwritten on the same line (check for duplicate calls to `include`). Precompiling packages... 9151.0 ms ✓ StatsBase 6846.0 ms ✓ Latexify 9189.2 ms ✓ ColorSchemes 1734.4 ms ✓ Xorg_libICE_jll 1708.1 ms ✓ eudev_jll 1694.6 ms ✓ mtdev_jll 1895.5 ms ✓ fzf_jll 1455.5 ms ✓ EpollShim_jll 1777.6 ms ✓ libevdev_jll 1931.3 ms ✓ Dbus_jll 2376.0 ms ✓ Xorg_xcb_util_jll 1787.3 ms ✓ Xorg_libXfixes_jll 1754.2 ms ✓ Xorg_libxkbfile_jll 1853.8 ms ✓ Xorg_libXrandr_jll 1758.9 ms ✓ Xorg_libXinerama_jll 3602.8 ms ✓ FFMPEG_jll 2645.4 ms ✓ Latexify → SparseArraysExt 4993.6 ms ✓ UnitfulLatexify 16423.4 ms ✓ PlotUtils 1659.7 ms ✓ Xorg_libSM_jll 2474.5 ms ✓ JLFzf 1662.2 ms ✓ Wayland_jll 1562.2 ms ✓ libinput_jll 1632.6 ms ✓ Xorg_xcb_util_renderutil_jll 1603.7 ms ✓ Xorg_xcb_util_wm_jll 1614.4 ms ✓ Xorg_xcb_util_image_jll 1606.9 ms ✓ Xorg_xcb_util_keysyms_jll 1301.6 ms ✓ Xorg_libXcursor_jll 1271.5 ms ✓ Xorg_libXi_jll 1251.3 ms ✓ Xorg_xkbcomp_jll 1383.7 ms ✓ FFMPEG 6586.8 ms ✓ PlotThemes 6036.0 ms ✓ RecipesPipeline 1197.8 ms ✓ Xorg_xcb_util_cursor_jll 1031.9 ms ✓ Xorg_xkeyboard_config_jll 1178.8 ms ✓ xkbcommon_jll 1195.4 ms ✓ Vulkan_Loader_jll 1284.9 ms ✓ libdecor_jll 1423.1 ms ✓ Qt6Base_jll 1375.2 ms ✓ GLFW_jll 1399.3 ms ✓ Qt6ShaderTools_jll 1834.9 ms ✓ GR_jll 1544.4 ms ✓ Qt6Declarative_jll 1444.2 ms ✓ Qt6Wayland_jll 4913.6 ms ✓ GR 89580.4 ms ✓ Plots 17748.4 ms ✓ Plots → UnitfulExt 47 dependencies successfully precompiled in 235 seconds. 131 already precompiled. Precompiling packages... 3151.3 ms ✓ KernelAbstractions → SparseArraysExt 1 dependency successfully precompiled in 3 seconds. 34 already precompiled. Precompiling packages... 1775.4 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 1 dependency successfully precompiled in 2 seconds. 36 already precompiled. Precompiling packages... 1803.8 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 1 dependency successfully precompiled in 2 seconds. 23 already precompiled. Precompiling packages... 4587.5 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 1 dependency successfully precompiled in 6 seconds. 91 already precompiled. Precompiling packages... 1684.8 ms ✓ ColorVectorSpace → SpecialFunctionsExt 1 dependency successfully precompiled in 2 seconds. 51 already precompiled. Precompiling packages... 21106.3 ms ✓ Plots → FileIOExt 1 dependency successfully precompiled in 23 seconds. 180 already precompiled. WARNING: Method definition point_cloud(Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/test/point_cloud.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Main.point_cloud), Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/test/point_cloud.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition perturb!(Any, Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/test/point_cloud.jl:22 overwritten on the same line (check for duplicate calls to `include`). TrivialNeighborhoodSearch with 50 = 50 particles finished in 5.072 μs GridNeighborhoodSearch with 50 = 50 particles finished in 3.880 μs PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 1.058 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 64.200 μs GridNeighborhoodSearch with 200 = 200 particles finished in 16.039 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 4.181 μs TrivialNeighborhoodSearch with 50 = 50 particles finished in 6.740 μs GridNeighborhoodSearch with 50 = 50 particles finished in 4.894 μs PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 2.938 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 116.718 μs GridNeighborhoodSearch with 200 = 200 particles finished in 27.840 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 17.439 μs TrivialNeighborhoodSearch with 50 = 50 particles finished in 14.550 μs GridNeighborhoodSearch with 50 = 50 particles finished in 17.389 μs PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 15.370 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 175.459 μs GridNeighborhoodSearch with 200 = 200 particles finished in 72.820 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 62.230 μs TrivialNeighborhoodSearch with 50 = 50 particles finished in 15.580 μs GridNeighborhoodSearch with 50 = 50 particles finished in 17.110 μs PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 14.190 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 194.048 μs GridNeighborhoodSearch with 200 = 200 particles finished in 50.159 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 39.170 μs TrivialNeighborhoodSearch with 50 = 50 particles finished in 13.710 μs GridNeighborhoodSearch with 50 = 50 particles finished in 13.350 μs PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 9.110 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 147.139 μs GridNeighborhoodSearch with 200 = 200 particles finished in 50.419 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 35.050 μs TrivialNeighborhoodSearch with 50 = 50 particles finished in 4.189 ns GridNeighborhoodSearch with 50 = 50 particles finished in 3.146 μs PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 11.040 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 4.070 ns GridNeighborhoodSearch with 200 = 200 particles finished in 12.540 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 46.829 μs TrivialNeighborhoodSearch with 50 = 50 particles finished in 1.605 ns GridNeighborhoodSearch with 50 = 50 particles finished in 736.500 ns PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 9.090 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 1.665 ns GridNeighborhoodSearch with 200 = 200 particles finished in 2.878 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 35.785 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 25.429 μs GridNeighborhoodSearch with 10x10 = 100 particles finished in 32.339 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 10.789 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 586.204 μs GridNeighborhoodSearch with 20x20 = 400 particles finished in 233.898 μs PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 49.870 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 97.249 μs GridNeighborhoodSearch with 10x10 = 100 particles finished in 89.439 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 55.020 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 1.155 ms GridNeighborhoodSearch with 20x20 = 400 particles finished in 551.775 μs PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 193.128 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 147.078 μs GridNeighborhoodSearch with 10x10 = 100 particles finished in 190.318 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 168.059 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 1.764 ms GridNeighborhoodSearch with 20x20 = 400 particles finished in 1.014 ms PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 782.143 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 205.038 μs GridNeighborhoodSearch with 10x10 = 100 particles finished in 185.078 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 155.968 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 1.784 ms GridNeighborhoodSearch with 20x20 = 400 particles finished in 1.031 ms PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 762.453 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 171.468 μs GridNeighborhoodSearch with 10x10 = 100 particles finished in 169.909 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 176.568 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 1.176 ms GridNeighborhoodSearch with 20x20 = 400 particles finished in 928.101 μs PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 625.005 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 4.120 ns GridNeighborhoodSearch with 10x10 = 100 particles finished in 5.832 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 71.329 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 4.100 ns GridNeighborhoodSearch with 20x20 = 400 particles finished in 21.910 μs PrecomputedNeighborhoodSearch ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_44650.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2382 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000078a6d8cbaa40 Total snapshots: 437. Utilization: 0% ╎437 @Base/task.jl:1137 wait_forever() 436╎ 437 @Base/task.jl:1200 wait() with 20x20 = 400 particles finished in 464.475 μs [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_44650.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2382 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 24483236 (Pool: 24482549; Big: 687); GC: 24 PkgEval terminated after 2723.4s: test duration exceeded the time limit