Package evaluation of PEtabSelect on Julia 1.13.0-DEV.1080 (ed57414aec*) started at 2025-09-04T14:34:11.828 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.14s ################################################################################ # Installation # Installing PEtabSelect... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [6de2f99a] + PEtabSelect v0.1.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [992eb4ea] + CondaPkg v0.2.31 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [0f8b85d8] + JSON3 v1.14.3 [1914dd2f] + MacroTools v0.5.16 [0b3b1443] + MicroMamba v0.1.14 [bac558e1] + OrderedCollections v1.8.1 [6de2f99a] + PEtabSelect v0.1.0 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [6099a3de] + PythonCall v0.9.27 [ae029012] + Requires v1.3.1 [6c6a2e73] + Scratch v1.3.0 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [e17b2a0c] + UnsafePointers v1.0.0 ⌅ [f8abcde7] + micromamba_jll v1.5.12+0 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.8.12 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] + nghttp2_jll v1.67.0+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 1.24s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 79.54s ################################################################################ # Testing # Testing PEtabSelect Status `/tmp/jl_7N6Cbv/Project.toml` [4c88cf16] Aqua v0.8.14 [992eb4ea] CondaPkg v0.2.31 [6de2f99a] PEtabSelect v0.1.0 [6099a3de] PythonCall v0.9.27 [1bc83da4] SafeTestsets v0.1.0 [ddb6d928] YAML v0.4.14 [8dfed614] Test v1.11.0 Status `/tmp/jl_7N6Cbv/Manifest.toml` [4c88cf16] Aqua v0.8.14 [34da2185] Compat v4.18.0 [992eb4ea] CondaPkg v0.2.31 [9a962f9c] DataAPI v1.16.0 [e2d170a0] DataValueInterfaces v1.0.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [0f8b85d8] JSON3 v1.14.3 [1914dd2f] MacroTools v0.5.16 [0b3b1443] MicroMamba v0.1.14 [bac558e1] OrderedCollections v1.8.1 [6de2f99a] PEtabSelect v0.1.0 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [6099a3de] PythonCall v0.9.27 [ae029012] Requires v1.3.1 [1bc83da4] SafeTestsets v0.1.0 [6c6a2e73] Scratch v1.3.0 [69024149] StringEncodings v0.3.7 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [e17b2a0c] UnsafePointers v1.0.0 [ddb6d928] YAML v0.4.14 [94ce4f54] Libiconv_jll v1.18.0+0 ⌅ [f8abcde7] micromamba_jll v1.5.12+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.8.12 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850ede] nghttp2_jll v1.67.0+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... Info Given PEtabSelect was explicitly requested, output will be shown live   CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PEtabSelect/hK2Tm/CondaPkg.toml  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/IOKTD/CondaPkg.toml  CondaPkg Resolving changes  + openssl  + petab-select (pip)  + python  + uv  CondaPkg Initialising pixi  │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi  │ init  │ --format pixi  └ /tmp/jl_7N6Cbv/.CondaPkg ✔ Created /tmp/jl_7N6Cbv/.CondaPkg/pixi.toml  CondaPkg Wrote /tmp/jl_7N6Cbv/.CondaPkg/pixi.toml  │ [dependencies]  │ openssl = ">=3, <3.6"  │ uv = ">=0.4"  │  │ [dependencies.python]  │ version = ">=3.9,<4"  │ build = "*cp*"  │ channel = "conda-forge"  │  │ [pypi-dependencies]  │ petab-select = "*"  │  │ [project]  │ name = ".CondaPkg"  │ description = "automatically generated by CondaPkg.jl"  │ platforms = ["linux-64"]  │ channel-priority = "strict"  └ channels = ["conda-forge"]  CondaPkg Installing packages  │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi  │ install  └ --manifest-path /tmp/jl_7N6Cbv/.CondaPkg/pixi.toml ✔ The default environment has been installed. 82470.6 ms ✓ PEtabSelect 1 dependency successfully precompiled in 83 seconds. 54 already precompiled. 1 dependency had output during precompilation: ┌ PEtabSelect │ [Output was shown above] └ Test Summary: | Pass Total Time Aqua Quality Check | 10 10 4m51.4s Precompiling packages... 4577.3 ms ✓ StringEncodings 2528.2 ms ✓ YAML 2 dependencies successfully precompiled in 7 seconds. 8 already precompiled. Test Summary: | Pass Total Time Problem import | 9 9 29.7s Testing PEtabSelect tests passed Testing completed after 268.67s PkgEval succeeded after 467.98s