Package evaluation of KSVD on Julia 1.13.0-DEV.1080 (ed57414aec*) started at 2025-09-04T19:51:39.676 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.03s ################################################################################ # Installation # Installing KSVD... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [778123d0] + KSVD v1.13.5 Updating `~/.julia/environments/v1.13/Manifest.toml` [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.20.0 [198e06fe] + BangBang v0.4.4 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] + CPUSummary v0.2.7 [ae650224] + ChunkSplitters v3.1.2 [fb6a15b2] + CloseOpenIntervals v0.1.13 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [e2ba6199] + ExprTools v0.1.10 [1a297f60] + FillArrays v1.13.0 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [22cec73e] + InitialValues v0.3.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.1 [778123d0] + KSVD v1.13.5 ⌅ [0b1a1467] + KrylovKit v0.9.5 [10f19ff3] + LayoutPointers v0.1.17 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [e1d29d7a] + Missings v1.2.0 [67456a42] + OhMyThreads v0.8.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [65ce6f38] + PackageExtensionCompat v1.0.2 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [94e857df] + SIMDTypes v0.1.0 [7e506255] + ScopedValues v1.5.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [91464d47] + StableTasks v0.1.7 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [7792a7ef] + StrideArraysCore v0.5.8 [9449cd9e] + TSVD v0.4.4 [ed4db957] + TaskLocalValues v0.1.3 [3d91a4ae] + ThreadedDenseSparseMul v0.5.1 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [409d34a3] + VectorInterface v0.5.0 ⌅ [68821587] + Arpack_jll v3.5.1+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.8.12 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.67.0+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.91s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: ReTest Failed to precompile ReTest [e0db7c4e-2690-44b9-bad6-7687da720f89] to "/home/pkgeval/.julia/compiled/v1.13/ReTest/jl_8koBIC" (ProcessExited(1)). WARNING: Imported binding Test.pop_testset was undeclared at import time during import to Testset. WARNING: Imported binding Test.push_testset was undeclared at import time during import to Testset. ┌ Error: Precompilation failed, this is the captured stdout (114 chars): └ @ ReTest ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:36 Pass | Time / Compile / GC | Alloc ΔRSS | ReTest._ReTestPrecompileTests: ┌ Error: And this is the captured stderr (0 chars): └ @ ReTest ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:39 ERROR: LoadError: TaskFailedException Stacktrace: [1] #wait#585 @ ./task.jl:363 [inlined] [2] wait @ ./task.jl:360 [inlined] [3] retest(::Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}, ::Vararg{Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}}; dry::Bool, stats::Bool, shuffle::Bool, group::Bool, verbose::Bool, recursive::Bool, id::Nothing, strict::Bool, dup::Bool, static::Nothing, load::Bool, seed::Bool, marks::Bool, tag::Vector{Symbol}, spin::Bool, clear::Bool) @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1186 [4] kwcall(::@NamedTuple{recursive::Bool, stats::Bool, spin::Bool}, ::typeof(InlineTest.retest), ::Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}, ::Vararg{Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}}) @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:750 [5] #137 @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:26 [inlined] [6] redirect_stdio(f::ReTest.var"#137#138"; stdin::Nothing, stderr::Pipe, stdout::Pipe) @ Base ./stream.jl:1443 [7] kwcall(::@NamedTuple{stderr::Pipe, stdout::Pipe}, ::typeof(redirect_stdio), f::Function) @ Base ./stream.jl:1406 [8] macro expansion @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:25 [inlined] [9] macro expansion @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined] [10] macro expansion @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:23 [inlined] [11] macro expansion @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:121 [inlined] [12] top-level scope @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:118 [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:309 [14] top-level scope @ ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1751 [15] include(mod::Module, _path::String) @ Base ./Base.jl:308 [16] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3019 [17] top-level scope @ stdin:5 [18] eval(m::Module, e::Any) @ Core ./boot.jl:489 [19] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2865 [20] include_string @ ./loading.jl:2875 [inlined] [21] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [22] _start() @ Base ./client.jl:563 nested task error: TaskFailedException nested task error: UndefVarError: `push_testset` not defined in `ReTest.Testset` Suggestion: this global was defined as `Test.push_testset` but not assigned a value. Stacktrace: [1] top-level scope @ ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:517 [2] macro expansion @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:12 [inlined] [3] macro expansion @ ~/.julia/packages/ReTest/3Ikse/src/testset.jl:517 [inlined] [4] eval(m::Module, e::Any) @ Core ./boot.jl:489 [5] (::ReTest.var"#110#111"{ReTest.Testset.Format})(mod::Module, ts::ReTest.TestsetExpr, pat::ReTest.And, chan::@NamedTuple{out::Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, compute::Channel{Nothing}, preview::Nothing}) @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1154 [6] #local_remotecall_thunk##0 @ /opt/julia/share/julia/stdlib/v1.13/Distributed/src/remotecall.jl:425 [inlined] [7] run_work_thunk(thunk::Distributed.var"#local_remotecall_thunk##0#local_remotecall_thunk##1"{ReTest.var"#110#111"{ReTest.Testset.Format}, Tuple{Module, ReTest.TestsetExpr, ReTest.And, @NamedTuple{out::Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, compute::Channel{Nothing}, preview::Nothing}}, @Kwargs{}}, print_error::Bool) @ Distributed /opt/julia/share/julia/stdlib/v1.13/Distributed/src/process_messages.jl:70 [8] remotecall_fetch(::Function, ::Distributed.LocalProcess, ::Module, ::Vararg{Any}; kwargs::@Kwargs{}) @ Distributed /opt/julia/share/julia/stdlib/v1.13/Distributed/src/remotecall.jl:450 [9] remotecall_fetch @ /opt/julia/share/julia/stdlib/v1.13/Distributed/src/remotecall.jl:449 [inlined] [10] remotecall_fetch @ /opt/julia/share/julia/stdlib/v1.13/Distributed/src/remotecall.jl:492 [inlined] [11] (::ReTest.var"#106#107"{Int64, ReTest.Testset.Format, Nothing, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})() @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1151 Stacktrace: [1] remotecall_fetch(::Function, ::Distributed.LocalProcess, ::Module, ::Vararg{Any}; kwargs::@Kwargs{}) @ Distributed /opt/julia/share/julia/stdlib/v1.13/Distributed/src/remotecall.jl:451 [2] remotecall_fetch @ /opt/julia/share/julia/stdlib/v1.13/Distributed/src/remotecall.jl:449 [inlined] [3] remotecall_fetch @ /opt/julia/share/julia/stdlib/v1.13/Distributed/src/remotecall.jl:492 [inlined] [4] (::ReTest.var"#106#107"{Int64, ReTest.Testset.Format, Nothing, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})() @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1151 Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:601 [2] macro expansion @ ./task.jl:634 [inlined] [3] (::ReTest.var"#96#97"{Bool, ReTest.Testset.Format, Bool, Base.RefValue{Int64}, Bool, ReTest.var"#take_latest!#91", Nothing, ReentrantLock, Bool, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Base.RefValue{Exception}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})() @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1104 in expression starting at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/precompile.jl:19 in expression starting at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 108.54s ################################################################################ # Testing # Testing KSVD Status `/tmp/jl_DCudVb/Project.toml` [ec485272] ArnoldiMethod v0.4.0 [7d9fca2a] Arpack v0.5.4 ⌅ [864edb3b] DataStructures v0.18.22 [31c24e10] Distributions v0.25.120 [778123d0] KSVD v1.13.5 ⌅ [0b1a1467] KrylovKit v0.9.5 [67456a42] OhMyThreads v0.8.3 [aea7be01] PrecompileTools v1.3.3 [92933f4c] ProgressMeter v1.11.0 [e0db7c4e] ReTest v0.3.4 [2913bbd2] StatsBase v0.34.6 [9449cd9e] TSVD v0.4.4 [3d91a4ae] ThreadedDenseSparseMul v0.5.1 [a759f4b9] TimerOutputs v0.5.29 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_DCudVb/Manifest.toml` [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.20.0 [198e06fe] BangBang v0.4.4 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] CPUSummary v0.2.7 [ae650224] ChunkSplitters v3.1.2 [fb6a15b2] CloseOpenIntervals v0.1.13 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.13.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [22cec73e] InitialValues v0.3.1 [bd334432] InlineTest v0.2.0 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.1 [778123d0] KSVD v1.13.5 ⌅ [0b1a1467] KrylovKit v0.9.5 [10f19ff3] LayoutPointers v0.1.17 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [e1d29d7a] Missings v1.2.0 [67456a42] OhMyThreads v0.8.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [65ce6f38] PackageExtensionCompat v1.0.2 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [e0db7c4e] ReTest v0.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [94e857df] SIMDTypes v0.1.0 [7e506255] ScopedValues v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.5.1 [91464d47] StableTasks v0.1.7 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [7792a7ef] StrideArraysCore v0.5.8 [9449cd9e] TSVD v0.4.4 [ed4db957] TaskLocalValues v0.1.3 [3d91a4ae] ThreadedDenseSparseMul v0.5.1 [8290d209] ThreadingUtilities v0.5.5 [a759f4b9] TimerOutputs v0.5.29 [409d34a3] VectorInterface v0.5.0 ⌅ [68821587] Arpack_jll v3.5.1+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.8.12 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.0+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 4768.7 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 6 seconds. 49 already precompiled. Test Summary: | Pass Broken Total Time Test ksvd algo | 53 16 69 5m15.8s Test Summary: | Pass Total Time Test matching pursuit algo | 64 64 1m35.9s Test Summary: | Pass Total Time Run the whole thing | 1 1 5.3s Test Summary: | Pass Total Time Test utils | 5 5 3.1s Testing KSVD tests passed Testing completed after 442.38s PkgEval succeeded after 576.62s