Package evaluation of CellularPotts on Julia 1.13.0-DEV.1080 (ed57414aec*) started at 2025-09-05T01:52:56.924 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.16s ################################################################################ # Installation # Installing CellularPotts... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [11b7dee7] + CellularPotts v0.3.6 Updating `~/.julia/environments/v1.13/Manifest.toml` [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [11b7dee7] + CellularPotts v0.3.6 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.30.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [ffbed154] + DocStringExtensions v0.9.5 [e30172f5] + Documenter v1.14.1 [460bff9d] + ExceptionUnwrapping v0.1.11 [c87230d0] + FFMPEG v0.4.4 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [28b8d3ca] + GR v0.73.17 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LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.8.12 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.67.0+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.69s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:76 Precompiling package dependencies... Precompilation completed after 1395.94s ################################################################################ # Testing # Testing CellularPotts Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_NIggZr/Project.toml` [6e4b80f9] + BenchmarkTools v1.6.0 [11b7dee7] + CellularPotts v0.3.6 [0c46a032] + DifferentialEquations v7.16.1 Updating `/tmp/jl_NIggZr/Manifest.toml` [47edcb42] + ADTypes v1.17.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [a95523ee] + AlmostBlockDiagonals v0.1.10 [4fba245c] + ArrayInterface v7.20.0 [4c555306] + ArrayLayouts v1.11.2 [aae01518] + BandedMatrices v1.9.4 [6e4b80f9] + BenchmarkTools v1.6.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [764a87c0] + BoundaryValueDiffEq v5.18.0 [7227322d] + BoundaryValueDiffEqAscher v1.8.0 [56b672f2] + BoundaryValueDiffEqCore v1.11.1 [85d9eb09] + BoundaryValueDiffEqFIRK v1.9.0 [1a22d4ce] + BoundaryValueDiffEqMIRK v1.9.0 [9255f1d6] + BoundaryValueDiffEqMIRKN v1.8.0 [ed55bfe0] + BoundaryValueDiffEqShooting v1.9.0 [70df07ce] + BracketingNonlinearSolve v1.3.0 [2a0fbf3d] + CPUSummary v0.2.7 [11b7dee7] + CellularPotts v0.3.6 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + 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[856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [fb77eaff] + Sundials_jll v5.2.3+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [9fa8497b] + Future v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [9abbd945] + Profile v1.11.0 [4607b0f0] + SuiteSparse Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_NIggZr/Project.toml` [6e4b80f9] BenchmarkTools v1.6.0 [11b7dee7] CellularPotts v0.3.6 [35d6a980] ColorSchemes v3.30.0 [5ae59095] Colors v0.13.1 [0c46a032] DifferentialEquations v7.16.1 [e30172f5] Documenter v1.14.1 [86223c79] Graphs v1.13.1 [98b081ad] Literate v2.20.1 [2679e427] Metis v1.5.0 [6fe1bfb0] OffsetArrays v1.17.0 [91a5bcdd] Plots v1.40.19 ⌅ [08abe8d2] PrettyTables v2.4.0 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.6 [37e2e46d] LinearAlgebra v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_NIggZr/Manifest.toml` [47edcb42] ADTypes v1.17.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [a95523ee] AlmostBlockDiagonals v0.1.10 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.20.0 [4c555306] ArrayLayouts v1.11.2 [aae01518] BandedMatrices v1.9.4 [6e4b80f9] BenchmarkTools v1.6.0 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [764a87c0] BoundaryValueDiffEq v5.18.0 [7227322d] BoundaryValueDiffEqAscher v1.8.0 [56b672f2] BoundaryValueDiffEqCore v1.11.1 [85d9eb09] BoundaryValueDiffEqFIRK v1.9.0 [1a22d4ce] BoundaryValueDiffEqMIRK v1.9.0 [9255f1d6] BoundaryValueDiffEqMIRKN v1.8.0 [ed55bfe0] BoundaryValueDiffEqShooting v1.9.0 [70df07ce] BracketingNonlinearSolve v1.3.0 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [11b7dee7] CellularPotts v0.3.6 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.30.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [bcd4f6db] DelayDiffEq v5.59.0 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.188.0 [459566f4] DiffEqCallbacks v4.9.0 [77a26b50] DiffEqNoiseProcess v5.24.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [0c46a032] DifferentialEquations v7.16.1 [a0c0ee7d] DifferentiationInterface v0.7.7 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.14.1 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.13 [460bff9d] ExceptionUnwrapping v0.1.11 [7d51a73a] ExplicitImports v1.13.2 [d4d017d3] ExponentialUtilities v1.27.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [c87230d0] FFMPEG v0.4.4 [9d29842c] FastAlmostBandedMatrices v0.1.5 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.0.2 [a4df4552] FastPower v1.1.3 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.28.1 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.1.0 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [28b8d3ca] GR v0.73.17 [c145ed77] GenericSchur v0.5.5 [d7ba0133] Git v1.5.0 [86223c79] Graphs v1.13.1 [42e2da0e] Grisu v1.0.2 [cd3eb016] HTTP v1.10.17 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [1019f520] JLFzf v0.1.11 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 [ccbc3e58] JumpProcesses v9.17.0 [ba0b0d4f] Krylov v0.10.1 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.9 [10f19ff3] LayoutPointers v0.1.17 [0e77f7df] LazilyInitializedFields v1.3.0 [5078a376] LazyArrays v2.6.2 [2d8b4e74] LevyArea v1.0.0 [87fe0de2] LineSearch v0.1.4 [d3d80556] LineSearches v7.4.0 ⌃ [7ed4a6bd] LinearSolve v3.28.0 [98b081ad] Literate v2.20.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [d0879d2d] MarkdownAST v0.1.2 [a3b82374] MatrixFactorizations v3.0.1 [bb5d69b7] MaybeInplace v0.1.4 [739be429] MbedTLS v1.1.9 [442fdcdd] Measures v0.3.2 [2679e427] Metis v1.5.0 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 [d41bc354] NLSolversBase v7.10.0 [2774e3e8] NLsolve v4.5.1 [77ba4419] NaNMath v1.1.3 [8913a72c] NonlinearSolve v4.10.0 [be0214bd] NonlinearSolveBase v1.14.0 [5959db7a] NonlinearSolveFirstOrder v1.7.0 [9a2c21bd] NonlinearSolveQuasiNewton v1.8.0 [26075421] NonlinearSolveSpectralMethods v1.3.0 [6fe1bfb0] OffsetArrays v1.17.0 [4d8831e6] OpenSSL v1.5.0 [429524aa] Optim v1.13.2 [bac558e1] OrderedCollections v1.8.1 [1dea7af3] OrdinaryDiffEq v6.102.0 [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.5.0 [6ad6398a] OrdinaryDiffEqBDF v1.10.1 [bbf590c4] OrdinaryDiffEqCore v1.32.0 [50262376] OrdinaryDiffEqDefault v1.8.0 [4302a76b] OrdinaryDiffEqDifferentiation v1.15.0 [9286f039] OrdinaryDiffEqExplicitRK v1.4.0 [e0540318] OrdinaryDiffEqExponentialRK v1.8.0 [becaefa8] OrdinaryDiffEqExtrapolation v1.9.0 [5960d6e9] OrdinaryDiffEqFIRK v1.16.0 [101fe9f7] OrdinaryDiffEqFeagin v1.4.0 [d3585ca7] OrdinaryDiffEqFunctionMap v1.5.0 [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.5.0 [9f002381] OrdinaryDiffEqIMEXMultistep v1.7.0 [521117fe] OrdinaryDiffEqLinear v1.6.0 [1344f307] OrdinaryDiffEqLowOrderRK v1.6.0 [b0944070] OrdinaryDiffEqLowStorageRK v1.6.0 [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.14.1 [c9986a66] OrdinaryDiffEqNordsieck v1.4.0 [5dd0a6cf] OrdinaryDiffEqPDIRK v1.6.0 [5b33eab2] OrdinaryDiffEqPRK v1.4.0 [04162be5] OrdinaryDiffEqQPRK v1.4.0 [af6ede74] OrdinaryDiffEqRKN v1.5.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.17.0 [2d112036] OrdinaryDiffEqSDIRK v1.7.0 [669c94d9] OrdinaryDiffEqSSPRK v1.6.0 [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.6.0 [358294b1] OrdinaryDiffEqStabilizedRK v1.4.0 [fa646aed] OrdinaryDiffEqSymplecticRK v1.7.0 [b1df2697] OrdinaryDiffEqTsit5 v1.5.0 [79d7bb75] OrdinaryDiffEqVerner v1.6.0 [90014a1f] PDMats v0.11.35 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [ccf2f8ad] PlotThemes v3.3.0 [995b91a9] PlotUtils v1.4.3 [91a5bcdd] Plots v1.40.19 [e409e4f3] PoissonRandom v0.4.6 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [85a6dd25] PositiveFactorizations v0.2.4 [d236fae5] PreallocationTools v0.4.34 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 ⌅ [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [74087812] Random123 v1.7.1 [e6cf234a] RandomNumbers v1.6.0 [3cdcf5f2] 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StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [9672c7b4] SteadyStateDiffEq v2.5.0 [789caeaf] StochasticDiffEq v6.81.0 [7792a7ef] StrideArraysCore v0.5.8 [892a3eda] StringManipulation v0.4.1 [c3572dad] Sundials v4.28.0 [2efcf032] SymbolicIndexingInterface v0.3.43 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [8290d209] ThreadingUtilities v0.5.5 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [781d530d] TruncatedStacktraces v1.4.0 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [1cfade01] UnicodeFun v0.4.1 [1986cc42] Unitful v1.24.0 [45397f5d] UnitfulLatexify v1.7.0 [41fe7b60] Unzip v0.2.0 [6e34b625] Bzip2_jll v1.0.9+0 [83423d85] Cairo_jll v1.18.5+0 [ee1fde0b] Dbus_jll v1.16.2+0 [2702e6a9] EpollShim_jll v0.0.20230411+1 [2e619515] Expat_jll v2.7.1+0 [b22a6f82] FFMPEG_jll v7.1.1+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] 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[c0090381] Qt6Base_jll v6.8.2+1 [629bc702] Qt6Declarative_jll v6.8.2+1 [ce943373] Qt6ShaderTools_jll v6.8.2+1 [e99dba38] Qt6Wayland_jll v6.8.2+1 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [fb77eaff] Sundials_jll v5.2.3+0 [a44049a8] Vulkan_Loader_jll v1.3.243+0 [a2964d1f] Wayland_jll v1.24.0+0 [ffd25f8a] XZ_jll v5.8.1+0 [f67eecfb] Xorg_libICE_jll v1.1.2+0 [c834827a] Xorg_libSM_jll v1.2.6+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [935fb764] Xorg_libXcursor_jll v1.2.4+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [d091e8ba] Xorg_libXfixes_jll v6.0.1+0 [a51aa0fd] Xorg_libXi_jll v1.8.3+0 [d1454406] Xorg_libXinerama_jll v1.1.6+0 [ec84b674] Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [cc61e674] Xorg_libxkbfile_jll v1.1.3+0 [e920d4aa] Xorg_xcb_util_cursor_jll v0.1.5+0 [12413925] Xorg_xcb_util_image_jll v0.4.1+0 [2def613f] Xorg_xcb_util_jll v0.4.1+0 [975044d2] Xorg_xcb_util_keysyms_jll v0.4.1+0 [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.10+0 [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.2+0 [35661453] Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [35ca27e7] eudev_jll v3.2.14+0 [214eeab7] fzf_jll v0.61.1+0 [a4ae2306] libaom_jll v3.12.1+0 [0ac62f75] libass_jll v0.17.4+0 [1183f4f0] libdecor_jll v0.2.2+0 [2db6ffa8] libevdev_jll v1.13.4+0 [f638f0a6] libfdk_aac_jll v2.0.4+0 [36db933b] libinput_jll v1.28.1+0 [b53b4c65] libpng_jll v1.6.50+0 [f27f6e37] libvorbis_jll v1.3.8+0 [009596ad] mtdev_jll v1.1.7+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [1270edf5] x264_jll v10164.0.1+0 [dfaa095f] x265_jll v4.1.0+0 [d8fb68d0] xkbcommon_jll v1.9.2+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.8.12 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.0+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Spaces or graphs, who's to say? | 3 3 4.3s Test Summary: | Pass Total Time Periodic grids | 8 8 0.2s Test Summary: | Pass Total Time Neighborhoods | 2 2 0.0s Test Summary: | Pass Total Time Lonely cells | 2 2 8.3s Test Summary: | Pass Total Time Testing positions keyword | 2 2 1.7s Test Summary: | Pass Total Time Adding Cell Properties | 6 6 1.0s Test Summary: | Pass Total Time Add/Delete Cells | 2 2 0.5s Test Summary: | Pass Total Time Penalty tests | 1 1 0.9s Test Summary: | Pass Total Time General Fragment Test | 1 1 3.5s Test Summary: | Pass Total Time Euler Characteristic | 2 2 2.0s Test Summary: | Pass Total Time Show me the CPM | 1 1 0.5s Test Summary: | Pass Total Time Hello World | 1 1 3.6s Test Summary: | Pass Total Time Going 3D | 1 1 4.8s Test Summary: | Pass Total Time Lets Get Moving | 1 1 5.3s Test Summary: | Pass Total Time OnPatrol | 1 1 13.2s Test Summary: | Pass Total Time Over Here | 1 1 3.4s Precompiling packages... 4137.1 ms ✓ MatrixFactorizations 5286.5 ms ✓ FastGaussQuadrature 1736.9 ms ✓ LevyArea 25464.7 ms ✓ SciMLBase 9236.5 ms ✓ ForwardDiff 11062.5 ms ✓ Distributions 3036.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 4096.7 ms ✓ MatrixFactorizations → MatrixFactorizationsBandedMatricesExt 3994.9 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 8618.7 ms ✓ SciMLJacobianOperators 4594.3 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 3437.3 ms ✓ FastPower → FastPowerForwardDiffExt 2182.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 2076.6 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 2293.9 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 7219.5 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 6312.4 ms ✓ Distributions → DistributionsChainRulesCoreExt 8559.0 ms ✓ SciMLBase → SciMLBaseDistributionsExt 7120.9 ms ✓ DiffEqBase 25137.5 ms ✓ FastAlmostBandedMatrices 17533.4 ms ✓ LinearSolve 8542.5 ms ✓ LineSearch 56605.9 ms ✓ NonlinearSolveBase 4876.1 ms ✓ NLSolversBase 5047.5 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 4948.3 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 6939.1 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 25009.4 ms ✓ OrdinaryDiffEqCore 10608.0 ms ✓ DiffEqCallbacks 8703.3 ms ✓ LinearSolve → LinearSolveBandedMatricesExt 7266.7 ms ✓ LinearSolve → LinearSolveEnzymeExt 11480.3 ms ✓ LinearSolve → LinearSolveSparseArraysExt 10842.3 ms ✓ LinearSolve → LinearSolveForwardDiffExt 10384.6 ms ✓ LinearSolve → LinearSolveFastAlmostBandedMatricesExt 5418.9 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 4698.2 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 25295.3 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 4086.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 6774.7 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 4656.6 ms ✓ NonlinearSolveBase → NonlinearSolveBaseDiffEqBaseExt 6665.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseBandedMatricesExt 9381.9 ms ✓ BracketingNonlinearSolve 6852.4 ms ✓ LineSearches 24181.7 ms ✓ Sundials 5016.1 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 23744.9 ms ✓ JumpProcesses 22606.7 ms ✓ NonlinearSolveSpectralMethods 34987.1 ms ✓ NonlinearSolveQuasiNewton 8882.9 ms ✓ SteadyStateDiffEq 48311.8 ms ✓ NonlinearSolveFirstOrder 16403.6 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 5348.8 ms ✓ NLsolve 11758.4 ms ✓ Optim 4896.0 ms ✓ LineSearch → LineSearchLineSearchesExt 9171.0 ms ✓ OrdinaryDiffEqStabilizedRK 6955.0 ms ✓ OrdinaryDiffEqFunctionMap 64997.8 ms ✓ OrdinaryDiffEqVerner 7314.9 ms ✓ OrdinaryDiffEqQPRK 7743.7 ms ✓ OrdinaryDiffEqSymplecticRK 10278.3 ms ✓ OrdinaryDiffEqLowOrderRK 8124.3 ms ✓ OrdinaryDiffEqFeagin 9925.9 ms ✓ OrdinaryDiffEqSSPRK 7799.4 ms ✓ OrdinaryDiffEqRKN 8463.6 ms ✓ OrdinaryDiffEqHighOrderRK 7126.0 ms ✓ OrdinaryDiffEqExplicitRK 15194.3 ms ✓ OrdinaryDiffEqTsit5 18615.5 ms ✓ OrdinaryDiffEqLinear 7971.5 ms ✓ OrdinaryDiffEqPRK 10097.4 ms ✓ OrdinaryDiffEqLowStorageRK 30341.9 ms ✓ OrdinaryDiffEqDifferentiation 5901.8 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 11144.0 ms ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 33420.8 ms ✓ BoundaryValueDiffEqCore 4905.6 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 23044.4 ms ✓ SimpleNonlinearSolve 15160.3 ms ✓ DiffEqNoiseProcess 21305.3 ms ✓ OrdinaryDiffEqAdamsBashforthMoulton 24492.2 ms ✓ OrdinaryDiffEqNordsieck 9390.9 ms ✓ OrdinaryDiffEqDifferentiation → OrdinaryDiffEqDifferentiationSparseArraysExt 19331.8 ms ✓ BoundaryValueDiffEqAscher ✗ BoundaryValueDiffEqFIRK ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 335 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_44650.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2382 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_44650.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2382 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007e5e2d7c41f0 Total snapshots: 119. Utilization: 0% ╎119 @Base/task.jl:1137 wait_forever() 118╎ 119 @Base/task.jl:1200 wait() ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000713c27ebfee0 Total snapshots: 441. Utilization: 0% ╎441 @Base/task.jl:1137 wait_forever() 440╎ 441 @Base/task.jl:1200 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 [335] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/CellularPotts/EuGHg/docs/src/ExampleGallery/BringingODEsToLife/BringingODEsToLife.jl:6 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_44650.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2382 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 57277622 (Pool: 57276491; Big: 1131); GC: 46 jfptr_wait_forever_44650.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2382 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 40030808 (Pool: 40030074; Big: 734); GC: 33 PkgEval terminated after 2737.66s: test duration exceeded the time limit