Package evaluation of CatColabInterop on Julia 1.13.0-DEV.1080 (ed57414aec*) started at 2025-09-05T04:15:59.985 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.12s ################################################################################ # Installation # Installing CatColabInterop... Resolving package versions... Installed Conda ─────────── v1.10.2 Installed CatColabInterop ─ v0.1.1 Installed IJulia ────────── v1.30.3 ┌ Warning: tarball content does not match git-tree-sha1 └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:846 Cloning [227ef7b5-1206-438b-ac65-934d6da304b8] ACSets from https://github.com/AlgebraicJulia/ACSets.jl.git Installed ACSets ────────── v0.2.24 Updating `~/.julia/environments/v1.13/Project.toml` [9ecda8fb] + CatColabInterop v0.1.1 Updating `~/.julia/environments/v1.13/Manifest.toml` [227ef7b5] + ACSets v0.2.24 [47edcb42] + ADTypes v1.17.0 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [23cfdc9f] + AlgebraicInterfaces v0.1.4 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.20.0 [4c555306] + ArrayLayouts v1.11.2 [a9b6321e] + Atomix v1.1.2 [e2ed5e7c] + Bijections v0.2.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] + BracketingNonlinearSolve v1.3.0 [2a0fbf3d] + CPUSummary v0.2.7 [9ecda8fb] + CatColabInterop v0.1.1 ⌅ [134e5e36] + Catlab v0.16.20 [082447d4] + ChainRules v1.72.5 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 ⌅ [b1c52339] + CombinatorialSpaces v0.7.9 ⌅ [861a8166] + Combinatorics v1.0.2 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [0fb5dd42] + CompTime v0.1.2 [34da2185] + Compat v4.18.0 [b0b7db55] + ComponentArrays v0.15.29 [a81c6b42] + Compose v0.9.6 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [8f4d0f93] + Conda v1.10.2 [187b0558] + ConstructionBase v1.6.0 [b46f11dc] + CoordRefSystems v0.18.10 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [679ab3ea] + Decapodes v0.6.3 [6f00c28b] + DiagrammaticEquations v0.2.0 [2b5f629d] + DiffEqBase v6.188.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.7 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [7c1d4256] + DynamicPolynomials v0.6.3 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.13 [7d51a73a] + ExplicitImports v1.13.2 [d4d017d3] + ExponentialUtilities v1.27.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [411431e0] + Extents v0.1.6 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.0.2 [a4df4552] + FastPower v1.1.3 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.28.1 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.1.0 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 ⌅ [f0ffcf3b] + GATlab v0.1.6 [46192b85] + GPUArraysCore v0.2.0 [6b9d7cbe] + GeneralizedGenerated v0.3.3 [c145ed77] + GenericSchur v0.5.5 [5c1252a2] + GeometryBasics v0.5.10 [34004b35] + HypergeometricFunctions v0.3.28 [7073ff75] + IJulia v1.30.3 [7869d1d1] + IRTools v0.4.15 [615f187c] + IfElse v0.1.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [ae98c720] + Jieko v0.2.1 [b14d175d] + JuliaVariables v0.2.4 [63c18a36] + KernelAbstractions v0.9.38 [ba0b0d4f] + Krylov v0.10.1 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.6.2 [9c8b4983] + LightXML v0.9.2 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.0 [7ed4a6bd] + LinearSolve v3.39.2 [2ab3a3ac] + LogExpFunctions v0.3.29 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [442fdcdd] + Measures v0.3.2 [7269a6da] + MeshIO v0.5.3 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 ⌃ [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.6.4 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [71a1bf82] + NameResolution v0.1.5 [8913a72c] + NonlinearSolve v4.10.0 [be0214bd] + NonlinearSolveBase v1.14.0 [5959db7a] + NonlinearSolveFirstOrder v1.7.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.8.0 [26075421] + NonlinearSolveSpectralMethods v1.3.0 [bac558e1] + OrderedCollections v1.8.1 [1dea7af3] + OrdinaryDiffEq v6.102.0 [89bda076] + OrdinaryDiffEqAdamsBashforthMoulton v1.5.0 [6ad6398a] + OrdinaryDiffEqBDF v1.10.1 [bbf590c4] + OrdinaryDiffEqCore v1.32.0 [50262376] + OrdinaryDiffEqDefault v1.8.0 [4302a76b] + OrdinaryDiffEqDifferentiation v1.15.0 [9286f039] + OrdinaryDiffEqExplicitRK v1.4.0 [e0540318] + OrdinaryDiffEqExponentialRK v1.8.0 [becaefa8] + OrdinaryDiffEqExtrapolation v1.9.0 [5960d6e9] + OrdinaryDiffEqFIRK v1.16.0 [101fe9f7] + OrdinaryDiffEqFeagin v1.4.0 [d3585ca7] + OrdinaryDiffEqFunctionMap v1.5.0 [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.5.0 [9f002381] + OrdinaryDiffEqIMEXMultistep v1.7.0 [521117fe] + OrdinaryDiffEqLinear v1.6.0 [1344f307] + OrdinaryDiffEqLowOrderRK v1.6.0 [b0944070] + OrdinaryDiffEqLowStorageRK v1.6.0 [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.14.1 [c9986a66] + OrdinaryDiffEqNordsieck v1.4.0 [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.6.0 [5b33eab2] + OrdinaryDiffEqPRK v1.4.0 [04162be5] + OrdinaryDiffEqQPRK v1.4.0 [af6ede74] + OrdinaryDiffEqRKN v1.5.0 [43230ef6] + OrdinaryDiffEqRosenbrock v1.17.0 [2d112036] + OrdinaryDiffEqSDIRK v1.7.0 [669c94d9] + OrdinaryDiffEqSSPRK v1.6.0 [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.6.0 [358294b1] + OrdinaryDiffEqStabilizedRK v1.4.0 [fa646aed] + OrdinaryDiffEqSymplecticRK v1.7.0 [b1df2697] + OrdinaryDiffEqTsit5 v1.5.0 [79d7bb75] + OrdinaryDiffEqVerner v1.6.0 [90014a1f] + PDMats v0.11.35 [12d937ae] + PEG v1.0.4 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [2ae35dd2] + Permutations v0.4.23 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [8162dcfd] + PrettyPrint v0.2.0 ⌅ [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [94ee1d12] + Quaternions v0.7.6 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.37.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [6038ab10] + Rotations v1.7.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.116.3 [19f34311] + SciMLJacobianOperators v0.1.11 [c0aeaf25] + SciMLOperators v1.7.1 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.7.0 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [dc90abb0] + SparseInverseSubset v0.1.2 [0a514795] + SparseMatrixColorings v0.4.21 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [7792a7ef] + StrideArraysCore v0.5.8 [892a3eda] + StringManipulation v0.4.1 [09ab397b] + StructArrays v0.7.1 [6ec83bb0] + StructEquality v2.1.0 [856f2bd8] + StructTypes v1.11.0 [2efcf032] + SymbolicIndexingInterface v0.3.43 [d1185830] + SymbolicUtils v3.32.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [c5d3f3f7] + TetGen v2.0.0 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.24.0 [a7c27f48] + Unityper v0.1.6 [013be700] + UnsafeAtomics v0.3.0 [81def892] + VersionParsing v1.3.0 [c2297ded] + ZMQ v1.4.1 [e88e6eb3] + Zygote v0.7.10 [700de1a5] + ZygoteRules v0.2.7 [5ae413db] + EarCut_jll v2.2.4+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [b47fdcd6] + TetGen_jll v1.5.3+0 [02c8fc9c] + XML2_jll v2.14.4+0 [8f1865be] + ZeroMQ_jll v4.3.6+0 [a9144af2] + libsodium_jll v1.0.21+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.8.12 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.67.0+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log` Building IJulia → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/00a9cbc52b819846e89ef5b221227c33b110d8e0/build.log` Installation completed after 14.79s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 2108.75s ################################################################################ # Testing # Testing CatColabInterop Status `/tmp/jl_hle78h/Project.toml` [227ef7b5] ACSets v0.2.24 [9ecda8fb] CatColabInterop v0.1.1 ⌅ [b1c52339] CombinatorialSpaces v0.7.9 [b0b7db55] ComponentArrays v0.15.29 [679ab3ea] Decapodes v0.6.3 [6f00c28b] DiagrammaticEquations v0.2.0 [0f8b85d8] JSON3 v1.14.3 [d8e11817] MLStyle v0.4.17 [1dea7af3] OrdinaryDiffEq v6.102.0 [90137ffa] StaticArrays v1.9.15 [37e2e46d] LinearAlgebra v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_hle78h/Manifest.toml` [227ef7b5] ACSets v0.2.24 [47edcb42] ADTypes v1.17.0 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [23cfdc9f] AlgebraicInterfaces v0.1.4 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.20.0 [4c555306] ArrayLayouts v1.11.2 [a9b6321e] Atomix v1.1.2 [e2ed5e7c] Bijections v0.2.2 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.3.0 [2a0fbf3d] CPUSummary v0.2.7 [9ecda8fb] CatColabInterop v0.1.1 ⌅ [134e5e36] Catlab v0.16.20 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 ⌅ [b1c52339] CombinatorialSpaces v0.7.9 ⌅ [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [0fb5dd42] CompTime v0.1.2 [34da2185] Compat v4.18.0 [b0b7db55] ComponentArrays v0.15.29 [a81c6b42] Compose v0.9.6 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [8f4d0f93] Conda v1.10.2 [187b0558] ConstructionBase v1.6.0 [b46f11dc] CoordRefSystems v0.18.10 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [679ab3ea] Decapodes v0.6.3 [6f00c28b] DiagrammaticEquations v0.2.0 [2b5f629d] DiffEqBase v6.188.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.7 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [7c1d4256] DynamicPolynomials v0.6.3 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.13 [7d51a73a] ExplicitImports v1.13.2 [d4d017d3] ExponentialUtilities v1.27.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [411431e0] Extents v0.1.6 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.0.2 [a4df4552] FastPower v1.1.3 [5789e2e9] FileIO v1.17.0 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.28.1 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.1.0 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.5.2 ⌅ [f0ffcf3b] GATlab v0.1.6 [46192b85] GPUArraysCore v0.2.0 [6b9d7cbe] GeneralizedGenerated v0.3.3 [c145ed77] GenericSchur v0.5.5 [5c1252a2] GeometryBasics v0.5.10 [34004b35] HypergeometricFunctions v0.3.28 [7073ff75] IJulia v1.30.3 [7869d1d1] IRTools v0.4.15 [615f187c] IfElse v0.1.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [ae98c720] Jieko v0.2.1 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.38 [ba0b0d4f] Krylov v0.10.1 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [5078a376] LazyArrays v2.6.2 [9c8b4983] LightXML v0.9.2 [87fe0de2] LineSearch v0.1.4 [d3d80556] LineSearches v7.4.0 [7ed4a6bd] LinearSolve v3.39.2 [2ab3a3ac] LogExpFunctions v0.3.29 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [bb5d69b7] MaybeInplace v0.1.4 [442fdcdd] Measures v0.3.2 [7269a6da] MeshIO v0.5.3 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 ⌃ [102ac46a] MultivariatePolynomials v0.5.9 [d8a4904e] MutableArithmetics v1.6.4 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [71a1bf82] NameResolution v0.1.5 [8913a72c] NonlinearSolve v4.10.0 [be0214bd] NonlinearSolveBase v1.14.0 [5959db7a] NonlinearSolveFirstOrder v1.7.0 [9a2c21bd] NonlinearSolveQuasiNewton v1.8.0 [26075421] NonlinearSolveSpectralMethods v1.3.0 [bac558e1] OrderedCollections v1.8.1 [1dea7af3] OrdinaryDiffEq v6.102.0 [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.5.0 [6ad6398a] OrdinaryDiffEqBDF v1.10.1 [bbf590c4] OrdinaryDiffEqCore v1.32.0 [50262376] OrdinaryDiffEqDefault v1.8.0 [4302a76b] OrdinaryDiffEqDifferentiation v1.15.0 [9286f039] OrdinaryDiffEqExplicitRK v1.4.0 [e0540318] OrdinaryDiffEqExponentialRK v1.8.0 [becaefa8] OrdinaryDiffEqExtrapolation v1.9.0 [5960d6e9] OrdinaryDiffEqFIRK v1.16.0 [101fe9f7] OrdinaryDiffEqFeagin v1.4.0 [d3585ca7] OrdinaryDiffEqFunctionMap v1.5.0 [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.5.0 [9f002381] OrdinaryDiffEqIMEXMultistep v1.7.0 [521117fe] OrdinaryDiffEqLinear v1.6.0 [1344f307] OrdinaryDiffEqLowOrderRK v1.6.0 [b0944070] OrdinaryDiffEqLowStorageRK v1.6.0 [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.14.1 [c9986a66] OrdinaryDiffEqNordsieck v1.4.0 [5dd0a6cf] OrdinaryDiffEqPDIRK v1.6.0 [5b33eab2] OrdinaryDiffEqPRK v1.4.0 [04162be5] OrdinaryDiffEqQPRK v1.4.0 [af6ede74] OrdinaryDiffEqRKN v1.5.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.17.0 [2d112036] OrdinaryDiffEqSDIRK v1.7.0 [669c94d9] OrdinaryDiffEqSSPRK v1.6.0 [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.6.0 [358294b1] OrdinaryDiffEqStabilizedRK v1.4.0 [fa646aed] OrdinaryDiffEqSymplecticRK v1.7.0 [b1df2697] OrdinaryDiffEqTsit5 v1.5.0 [79d7bb75] OrdinaryDiffEqVerner v1.6.0 [90014a1f] PDMats v0.11.35 [12d937ae] PEG v1.0.4 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [2ae35dd2] Permutations v0.4.23 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [d236fae5] PreallocationTools v0.4.34 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [8162dcfd] PrettyPrint v0.2.0 ⌅ [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [94ee1d12] Quaternions v0.7.6 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.37.1 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [6038ab10] Rotations v1.7.1 [7e49a35a] RuntimeGeneratedFunctions v0.5.15 [94e857df] SIMDTypes v0.1.0 [0bca4576] SciMLBase v2.116.3 [19f34311] SciMLJacobianOperators v0.1.11 [c0aeaf25] SciMLOperators v1.7.1 [53ae85a6] SciMLStructures v1.7.0 [efcf1570] Setfield v1.1.2 [727e6d20] SimpleNonlinearSolve v2.7.0 [ce78b400] SimpleUnPack v1.1.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [0a514795] SparseMatrixColorings v0.4.21 [276daf66] SpecialFunctions v2.5.1 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [7792a7ef] StrideArraysCore v0.5.8 [892a3eda] StringManipulation v0.4.1 [09ab397b] StructArrays v0.7.1 [6ec83bb0] StructEquality v2.1.0 [856f2bd8] StructTypes v1.11.0 [2efcf032] SymbolicIndexingInterface v0.3.43 [d1185830] SymbolicUtils v3.32.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [ed4db957] TaskLocalValues v0.1.3 [8ea1fca8] TermInterface v2.0.0 [c5d3f3f7] TetGen v2.0.0 [8290d209] ThreadingUtilities v0.5.5 [a759f4b9] TimerOutputs v0.5.29 [781d530d] TruncatedStacktraces v1.4.0 [3a884ed6] UnPack v1.0.2 [1986cc42] Unitful v1.24.0 [a7c27f48] Unityper v0.1.6 [013be700] UnsafeAtomics v0.3.0 [81def892] VersionParsing v1.3.0 [c2297ded] ZMQ v1.4.1 [e88e6eb3] Zygote v0.7.10 [700de1a5] ZygoteRules v0.2.7 [5ae413db] EarCut_jll v2.2.4+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [856f044c] MKL_jll v2025.2.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [b47fdcd6] TetGen_jll v1.5.3+0 [02c8fc9c] XML2_jll v2.14.4+0 [8f1865be] ZeroMQ_jll v4.3.6+0 [a9144af2] libsodium_jll v1.0.21+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.8.12 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.0+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Text-to-Pode | 10 10 3.1s Test Summary: | Pass Total Time Validating the JSON object | 3 3 0.3s Test Summary: | Pass Total Time Validate model | 1 1 0.6s Test Summary: | Pass Total Time Diagram - Inverse Laplacian | 1 1 1.4s Test Summary: | Pass Total Time Analysis - Inverse Laplacian | 2 2 5m10.0s Test Summary: | Pass Total Time Diagram - Inverse Laplacian - Longtrip | 1 1 0.0s ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 493 running 1 of 1 signal (10): User defined signal 1 unknown function (ip: 0x79d6595ccfac) at /lib/x86_64-linux-gnu/libc.so.6 malloc at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) posix_memalign at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) aligned_alloc at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/new_opa.cc:78 [inlined] operator new at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/new_opa.cc:149 operator new at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/new_opant.cc:36 _ZN4llvm15allocate_bufferEmm at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm8DenseMapIPKNS_4SCEVENS_11SmallPtrSetIS3_Lj8EEENS_12DenseMapInfoIS3_vEENS_6detail12DenseMapPairIS3_S5_EEE4growEj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution12registerUserEPKNS_4SCEVENS_8ArrayRefIS3_EE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution13getMinMaxExprENS_9SCEVTypesERNS_15SmallVectorImplIPKNS_4SCEVEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm18SCEVRewriteVisitorIZNKS_15ScalarEvolution10LoopGuards7rewriteEPKNS_4SCEVEE21SCEVLoopGuardRewriterE5visitES5_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm18SCEVRewriteVisitorIZNKS_15ScalarEvolution10LoopGuards7rewriteEPKNS_4SCEVEE21SCEVLoopGuardRewriterE5visitES5_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZNK4llvm15ScalarEvolution10LoopGuards7rewriteEPKNS_4SCEVE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution10LoopGuards16collectFromBlockERS0_RS1_PKNS_10BasicBlockES6_RNS_15SmallPtrSetImplIS6_EEj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution15applyLoopGuardsEPKNS_4SCEVEPKNS_4LoopE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution16howManyLessThansEPKNS_4SCEVES3_PKNS_4LoopEbbb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution24computeExitLimitFromICmpEPKNS_4LoopENS_12CmpPredicateEPKNS_4SCEVES7_bb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution24computeExitLimitFromICmpEPKNS_4LoopEPNS_8ICmpInstEbbb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution28computeExitLimitFromCondImplERNS0_14ExitLimitCacheEPKNS_4LoopEPNS_5ValueEbbb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution30computeExitLimitFromCondCachedERNS0_14ExitLimitCacheEPKNS_4LoopEPNS_5ValueEbbb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution24computeExitLimitFromCondEPKNS_4LoopEPNS_5ValueEbbb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution16computeExitLimitEPKNS_4LoopEPNS_10BasicBlockEbb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution25computeBackedgeTakenCountEPKNS_4LoopEb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution20getBackedgeTakenInfoEPKNS_4LoopE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution11getRangeRefEPKNS_4SCEVENS0_13RangeSignHintEj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZL21StrengthenNoWrapFlagsPN4llvm15ScalarEvolutionENS_9SCEVTypesENS_8ArrayRefIPKNS_4SCEVEEENS4_11NoWrapFlagsE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution10getAddExprERNS_15SmallVectorImplIPKNS_4SCEVEEENS2_11NoWrapFlagsEj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution10createSCEVEPNS_5ValueE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution14createSCEVIterEPNS_5ValueE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution27createNodeFromSelectLikePHIEPNS_7PHINodeE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution16createNodeForPHIEPNS_7PHINodeE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution14createSCEVIterEPNS_5ValueE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution24createSimpleAffineAddRecEPNS_7PHINodeEPNS_5ValueES4_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution19createAddRecFromPHIEPNS_7PHINodeE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution16createNodeForPHIEPNS_7PHINodeE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15ScalarEvolution14createSCEVIterEPNS_5ValueE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15getPointersDiffEPNS_4TypeEPNS_5ValueES1_S3_RKNS_10DataLayoutERNS_15ScalarEvolutionEbb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15sortPtrAccessesENS_8ArrayRefIPNS_5ValueEEEPNS_4TypeERKNS_10DataLayoutERNS_15ScalarEvolutionERNS_15SmallVectorImplIjEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZNK4llvm13slpvectorizer7BoUpSLP17canVectorizeLoadsENS_8ArrayRefIPNS_5ValueEEEPKS3_RNS_15SmallVectorImplIjEERNS8_IS4_EEPjb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13slpvectorizer7BoUpSLP13buildTree_recENS_8ArrayRefIPNS_5ValueEEEjRKNS1_8EdgeInfoEj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm17SLPVectorizerPass18tryToVectorizeListENS_8ArrayRefIPNS_5ValueEEERNS_13slpvectorizer7BoUpSLPEb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm17SLPVectorizerPass14tryToVectorizeEPNS_11InstructionERNS_13slpvectorizer7BoUpSLPE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm17SLPVectorizerPass14tryToVectorizeENS_8ArrayRefINS_14WeakTrackingVHEEERNS_13slpvectorizer7BoUpSLPE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm17SLPVectorizerPass24vectorizeRootInstructionEPNS_7PHINodeEPNS_11InstructionEPNS_10BasicBlockERNS_13slpvectorizer7BoUpSLPE.constprop.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm17SLPVectorizerPass22vectorizeChainsInBlockEPNS_10BasicBlockERNS_13slpvectorizer7BoUpSLPE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm17SLPVectorizerPass7runImplERNS_8FunctionEPNS_15ScalarEvolutionEPNS_19TargetTransformInfoEPNS_17TargetLibraryInfoEPNS_9AAResultsEPNS_8LoopInfoEPNS_13DominatorTreeEPNS_15AssumptionCacheEPNS_12DemandedBitsEPNS_25OptimizationRemarkEmitterE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm17SLPVectorizerPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:791 operator() at /source/src/jitlayers.cpp:1510 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1471 [inlined] operator() at /source/src/jitlayers.cpp:1623 [inlined] addModule at /source/src/jitlayers.cpp:2080 jl_compile_codeinst_now at /source/src/jitlayers.cpp:682 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:873 jl_compile_method_internal at /source/src/gf.c:3535 _jl_invoke at /source/src/gf.c:3993 [inlined] ijl_apply_generic at /source/src/gf.c:4198 run_sim at /home/pkgeval/.julia/packages/CatColabInterop/jac9E/src/decapodes-service/analysis/simulation.jl:98 unknown function (ip: 0x79d5e3d762b5) at (unknown file) _jl_invoke at /source/src/gf.c:4001 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2382 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:772 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 include_string at ./loading.jl:2865 _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 _include at ./loading.jl:2925 include at ./Base.jl:309 IncludeInto at ./Base.jl:310 jfptr_IncludeInto_36079.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2382 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:690 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:772 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 exec_options at ./client.jl:296 _start at ./client.jl:563 jfptr__start_63312.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2382 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x79d65955c249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_44650.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2382 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007ec2ea0c0a60 Total snapshots: 437. Utilization: 0% ╎437 @Base/task.jl:1137 wait_forever() 436╎ 437 @Base/task.jl:1200 wait() [493] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/CatColabInterop/jac9E/test/runtests.jl:100 lookup_type_setvalue at /source/src/jltypes.c:1067 [inlined] lookup_typevalue at /source/src/jltypes.c:1139 lookup_arg_type_tuple at /source/src/gf.c:3070 [inlined] jl_lookup_generic_ at /source/src/gf.c:4128 [inlined] ijl_apply_generic at /source/src/gf.c:4194 StaticArray at /home/pkgeval/.julia/packages/StaticArrays/DsPgf/src/convert.jl:173 #state_at_time##0 at ./none (unknown line) iterate at ./generator.jl:48 [inlined] collect_to! at ./array.jl:861 collect_to_with_first! at ./array.jl:839 unknown function (ip: 0x79d5e3da75dc) at (unknown file) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 collect at ./array.jl:813 state_at_time at /home/pkgeval/.julia/packages/CatColabInterop/jac9E/src/decapodes-service/analysis/simulation.jl:144 [inlined] state_at_time at /home/pkgeval/.julia/packages/CatColabInterop/jac9E/src/decapodes-service/analysis/simulation.jl:136 #state_entire_sim##0 at /home/pkgeval/.julia/packages/CatColabInterop/jac9E/src/decapodes-service/analysis/simulation.jl:128 [inlined] iterate at ./generator.jl:48 [inlined] collect_to! at ./array.jl:861 collect_to_with_first! at ./array.jl:839 unknown function (ip: 0x79d5e3daa7f9) at (unknown file) _jl_invoke at /source/src/gf.c:4001 [inlined] ijl_apply_generic at /source/src/gf.c:4198 _collect at ./array.jl:833 collect_similar at ./array.jl:738 [inlined] map at ./abstractarray.jl:3386 [inlined] state_entire_sim at /home/pkgeval/.julia/packages/CatColabInterop/jac9E/src/decapodes-service/analysis/simulation.jl:127 [inlined] #variables_state##6 at ./none (unknown line) iterate at ./generator.jl:48 [inlined] collect at ./array.jl:803 variables_state at /home/pkgeval/.julia/packages/CatColabInterop/jac9E/src/decapodes-service/analysis/simulation.jl:121 SimResult at /home/pkgeval/.julia/packages/CatColabInterop/jac9E/src/decapodes-service/analysis/simulation.jl:112 unknown function (ip: 0x79d5e3da3640) at (unknown file) _jl_invoke at /source/src/gf.c:4001 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2382 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:772 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 include_string at ./loading.jl:2865 _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 _include at ./loading.jl:2925 include at ./Base.jl:309 IncludeInto at ./Base.jl:310 jfptr_IncludeInto_36079.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2382 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:690 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:772 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 exec_options at ./client.jl:296 _start at ./client.jl:563 jfptr__start_63312.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2382 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x79d65955c249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 521161796 (Pool: 521159566; Big: 2230); GC: 126 PkgEval terminated after 2722.61s: test duration exceeded the time limit