Package evaluation of VariogramAnalysis on Julia 1.13.0-DEV.1072 (de815ed1fa*) started at 2025-09-04T04:04:30.396 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.55s ################################################################################ # Installation # Installing VariogramAnalysis... Resolving package versions... Installed Conda ───────────── v1.10.2 Installed PyCall ──────────── v1.96.4 Installed VariogramAnalysis ─ v0.2.0 Updating `~/.julia/environments/v1.13/Project.toml` [07dc4704] + VariogramAnalysis v0.2.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.17.0 [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 ⌅ [c75e803d] + AdaptiveRejectionSampling v0.1.2 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.20.0 [d1d4a3ce] + BitFlags v0.1.9 [a134a8b2] + BlackBoxOptim v0.6.3 [a9c8d775] + CPUTime v1.0.0 [082447d4] + ChainRules v1.72.5 [d360d2e6] + ChainRulesCore v1.26.0 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.30.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.0.3 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + 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v0.3.10+0 [c22f9ab0] + Xorg_xcb_util_wm_jll v0.4.2+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [35ca27e7] + eudev_jll v3.2.14+0 [214eeab7] + fzf_jll v0.61.1+0 [a4ae2306] + libaom_jll v3.12.1+0 [0ac62f75] + libass_jll v0.17.4+0 [1183f4f0] + libdecor_jll v0.2.2+0 [2db6ffa8] + libevdev_jll v1.13.4+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [36db933b] + libinput_jll v1.28.1+0 [b53b4c65] + libpng_jll v1.6.50+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [009596ad] + mtdev_jll v1.1.7+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [d8fb68d0] + xkbcommon_jll v1.9.2+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.8.12 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.66.0+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda ────────────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log` Building PyCall ───────────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Building VariogramAnalysis → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/a451ab065c75ce2cabb6d2bf22e5d1fd72b49fad/build.log` Installation completed after 103.86s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 497.22s ################################################################################ # Testing # Testing VariogramAnalysis Status `/tmp/jl_hdS5Ye/Project.toml` [a134a8b2] BlackBoxOptim v0.6.3 [861a8166] Combinatorics v1.0.3 [8f4d0f93] Conda v1.10.2 [a93c6f00] DataFrames v1.7.1 [31c24e10] Distributions v0.25.120 [19dc6840] HCubature v1.7.0 [de52edbc] Integrals v4.7.0 [429524aa] Optim v1.13.2 [bac558e1] OrderedCollections v1.8.1 [91a5bcdd] Plots v1.40.19 [92933f4c] ProgressMeter v1.11.0 [438e738f] PyCall v1.96.4 [8a4e6c94] QuasiMonteCarlo v0.3.3 [f2b01f46] Roots v2.2.10 [10745b16] Statistics v1.11.1 ⌅ [6fc51010] Surrogates v6.11.0 [50679fc6] SurrogatesPolyChaos v0.1.1 [07dc4704] VariogramAnalysis v0.2.0 [37e2e46d] LinearAlgebra v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_hdS5Ye/Manifest.toml` [47edcb42] ADTypes v1.17.0 [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 ⌅ [c75e803d] AdaptiveRejectionSampling v0.1.2 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.20.0 [d1d4a3ce] BitFlags v0.1.9 [a134a8b2] BlackBoxOptim v0.6.3 [a9c8d775] CPUTime v1.0.0 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.26.0 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.30.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.0.3 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [8f4d0f93] Conda v1.10.2 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] 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Testing Running tests... Including test helpers... /home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/varstool/__init__.py:2: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. from pkg_resources import get_distribution, DistributionNotFound Running Ishigami comparison tests... Precompiling packages... 82315.5 ms ✓ Zygote 7490.1 ms ✓ SciMLBase → SciMLBasePyCallExt 5585.3 ms ✓ AdaptiveRejectionSampling 26786.7 ms ✓ BlackBoxOptim → BlackBoxOptimRealtimePlotServerExt 23386.6 ms ✓ Integrals → IntegralsForwardDiffExt 104134.5 ms ✓ Zygote → ZygoteColorsExt 5618.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceZygoteExt 73368.3 ms ✓ RecursiveArrayTools → RecursiveArrayToolsZygoteExt 12543.8 ms ✓ SciMLBase → SciMLBaseZygoteExt 142431.0 ms ✓ Surrogates 96776.7 ms ✓ Integrals → IntegralsZygoteExt 23507.9 ms ✓ PolyChaos 7293.2 ms ✓ SurrogatesPolyChaos 496022.8 ms ✓ VariogramAnalysis 14 dependencies successfully precompiled in 1124 seconds. 354 already precompiled. Precompiling packages... 10340.8 ms ✓ SciMLBase → SciMLBasePyCallExt 1 dependency successfully precompiled in 12 seconds. 70 already precompiled. [TEST HELPER] Patching Python methods... Ishigami test: Python helper functions defined successfully. --- Ishigami Function VARS/G-VARS Comparison: Julia vs. Python --- [TEST HELPER] Restoring original Python methods. Ishigami Comparison: Error During Test at /home/pkgeval/.julia/packages/VariogramAnalysis/xmy1H/test/runtests.jl:10 Got exception outside of a @test LoadError: UndefVarError: `sampler_exp1` not defined in `Main` The binding may be too new: running in world age 39412, while current world is 39469. Stacktrace: [1] (::var"#8#9")() @ Main ~/.julia/packages/VariogramAnalysis/xmy1H/test/ishigami_comparison_test.jl:122 [2] with_patched_varstool(f::var"#8#9") @ Main ~/.julia/packages/VariogramAnalysis/xmy1H/test/test_helpers.jl:104 [3] top-level scope @ ~/.julia/packages/VariogramAnalysis/xmy1H/test/ishigami_comparison_test.jl:11 [4] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:309 [5] top-level scope @ ~/.julia/packages/VariogramAnalysis/xmy1H/test/runtests.jl:5 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1945 [inlined] [7] macro expansion @ ~/.julia/packages/VariogramAnalysis/xmy1H/test/runtests.jl:11 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1945 [inlined] [9] macro expansion @ ~/.julia/packages/VariogramAnalysis/xmy1H/test/runtests.jl:11 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:309 [11] top-level scope @ none:6 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [14] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/VariogramAnalysis/xmy1H/test/ishigami_comparison_test.jl:11 Running Sobol-G comparison tests... [TEST HELPER] Patching Python methods... Sobol-G test: Python helper functions defined successfully. --- VARS Bootstrap Analysis (Sobol-G): Julia vs. Python vs. Analytical --- ================================================================================ --- RUNNING COMPARISON FOR d = 4 --- ================================================================================ Step 1: Running Julia Analysis... Step 2: Running Python Analysis... --- VARS Bootstrap Analysis Results (Sobol-G, d=4, 50 replicates) --- Parameter | Julia Mean ST | Python Mean ST | Analytical ST ----------------------------------------------------------------- x1 | 0.6400 | 0.5935 | 0.6902 x2 | 0.3351 | 0.3166 | 0.3562 x3 | 0.0503 | 0.0506 | 0.0563 x4 | 0.0083 | 0.0084 | 0.0092 ================================================================================ --- RUNNING COMPARISON FOR d = 10 --- ================================================================================ Step 1: Running Julia Analysis... Step 2: Running Python Analysis... --- VARS Bootstrap Analysis Results (Sobol-G, d=10, 50 replicates) --- Parameter | Julia Mean ST | Python Mean ST | Analytical ST ----------------------------------------------------------------- x1 | 0.6610 | 0.6224 | 0.6899 x2 | 0.3469 | 0.3280 | 0.3561 x3 | 0.0520 | 0.0511 | 0.0563 x4 | 0.0085 | 0.0082 | 0.0092 x5 | 0.0001 | 0.0001 | 0.0001 x6 | 0.0001 | 0.0001 | 0.0001 x7 | 0.0001 | 0.0001 | 0.0001 x8 | 0.0001 | 0.0001 | 0.0001 x9 | 0.0001 | 0.0001 | 0.0001 x10 | 0.0001 | 0.0001 | 0.0001 ================================================================================ --- RUNNING COMPARISON FOR d = 20 --- ================================================================================ Step 1: Running Julia Analysis... Step 2: Running Python Analysis... --- VARS Bootstrap Analysis Results (Sobol-G, d=20, 50 replicates) --- Parameter | Julia Mean ST | Python Mean ST | Analytical ST ----------------------------------------------------------------- x1 | 0.6707 | 0.6050 | 0.6895 x2 | 0.3504 | 0.3128 | 0.3559 x3 | 0.0527 | 0.0513 | 0.0563 x4 | 0.0086 | 0.0083 | 0.0092 x5 | 0.0001 | 0.0001 | 0.0001 x6 | 0.0001 | 0.0001 | 0.0001 x7 | 0.0001 | 0.0001 | 0.0001 x8 | 0.0001 | 0.0001 | 0.0001 x9 | 0.0001 | 0.0001 | 0.0001 x10 | 0.0001 | 0.0001 | 0.0001 x11 | 0.0001 | 0.0001 | 0.0001 x12 | 0.0001 | 0.0001 | 0.0001 x13 | 0.0001 | 0.0001 | 0.0001 x14 | 0.0001 | 0.0001 | 0.0001 x15 | 0.0001 | 0.0001 | 0.0001 x16 | 0.0001 | 0.0001 | 0.0001 x17 | 0.0001 | 0.0001 | 0.0001 x18 | 0.0001 | 0.0001 | 0.0001 x19 | 0.0001 | 0.0001 | 0.0001 x20 | 0.0001 | 0.0001 | 0.0001 --- All Sobol-G Comparisons Complete --- [TEST HELPER] Restoring original Python methods. Running D-VARS tests... Building and optimizing Anisotropic Kriging surrogate... ┌ Warning: `IntegralProblem{iip}(f::AbstractIntegralFunction, lb::Union{Number, AbstractVector{<:Number}}, ub::Union{Number, AbstractVector{<:Number}}, p = NullParameters(); kwargs...) where iip` is deprecated, use `IntegralProblem{iip}(f, (lb, ub), p; kwargs...)` instead. │ caller = ip:0x0 └ @ Core :-1 --- D-VARS Results --- Output Variance: 0.0274 Optimized Hyperparameters (phi): [5.8785, 5.9007, 5.8944] Sensitivity Indices (Gamma): [0.0174, 0.0174, 0.0174] Sensitivity Ratios (%): [33.31, 33.35, 33.34] Test Summary: | Pass Error Total Time VariogramAnalysis.jl | 39 1 40 26m14.8s Ishigami Comparison | 1 1 19m41.0s Sobol-G Comparison | 34 34 5m39.5s D-VARS Tests | 5 5 37.1s RNG of the outermost testset: Xoshiro(0xcf47be1d153d727e, 0xc2a8c79f85130368, 0xfdf04fb5156dae1c, 0xfcb959d6a87ab275, 0xf6051863aaf5c475) ERROR: LoadError: Some tests did not pass: 39 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/VariogramAnalysis/xmy1H/test/runtests.jl:3 Testing failed after 1573.08s ERROR: LoadError: Package VariogramAnalysis errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2673 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2522 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:308 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:330 [14] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 2235.03s: package tests unexpectedly errored