Package evaluation of VariantCallFormat on Julia 1.13.0-DEV.1072 (de815ed1fa*) started at 2025-09-03T11:45:19.564 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.53s ################################################################################ # Installation # Installing VariantCallFormat... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [28eba6e3] + VariantCallFormat v0.5.7 Updating `~/.julia/environments/v1.13/Manifest.toml` [67c07d97] + Automa v1.1.0 [28d598bf] + BGZFStreams v0.3.2 [47718e42] + BioGenerics v0.1.5 [e1450e63] + BufferedStreams v1.2.2 [944b1d66] + CodecZlib v0.7.8 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [fdea26ae] + SIMD v3.7.1 [3bb67fe8] + TranscodingStreams v0.11.3 [28eba6e3] + VariantCallFormat v0.5.7 [ade2ca70] + Dates v1.11.0 [8f399da3] + Libdl v1.11.0 [de0858da] + Printf v1.11.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [83775a58] + Zlib_jll v1.3.1+2 Installation completed after 1.13s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 36.92s ################################################################################ # Testing # Testing VariantCallFormat Status `/tmp/jl_teGoM5/Project.toml` [67c07d97] Automa v1.1.0 [28d598bf] BGZFStreams v0.3.2 [47718e42] BioGenerics v0.1.5 [e1450e63] BufferedStreams v1.2.2 [28eba6e3] VariantCallFormat v0.5.7 [ddb6d928] YAML v0.4.14 [8dfed614] Test v1.11.0 Status `/tmp/jl_teGoM5/Manifest.toml` [67c07d97] Automa v1.1.0 [28d598bf] BGZFStreams v0.3.2 [47718e42] BioGenerics v0.1.5 [e1450e63] BufferedStreams v1.2.2 [944b1d66] CodecZlib v0.7.8 [692b3bcd] JLLWrappers v1.7.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [fdea26ae] SIMD v3.7.1 [69024149] StringEncodings v0.3.7 [3bb67fe8] TranscodingStreams v0.11.3 [28eba6e3] VariantCallFormat v0.5.7 [ddb6d928] YAML v0.4.14 [94ce4f54] Libiconv_jll v1.18.0+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [4ec0a83e] Unicode v1.11.0 [83775a58] Zlib_jll v1.3.1+2 Testing Running tests... Precompiling packages... 5513.6 ms ✓ StringEncodings 2634.5 ms ✓ YAML 2 dependencies successfully precompiled in 8 seconds. 8 already precompiled. VCF: Test Failed at /home/pkgeval/.julia/packages/VariantCallFormat/DDn3I/test/vcf.jl:97 Expression: VCF.infokeys(record) == ["DP", "AA", "DB"] Evaluated: ["AA", "DP", "DB"] == ["DP", "AA", "DB"] Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:744 [inlined] [2] macro expansion @ ~/.julia/packages/VariantCallFormat/DDn3I/test/vcf.jl:97 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1945 [inlined] [4] top-level scope @ ~/.julia/packages/VariantCallFormat/DDn3I/test/vcf.jl:2 Test Summary: | Pass Fail Total Time VCF | 194 1 195 48.8s RNG of the outermost testset: Random.Xoshiro(0x6848bcce801e2fa5, 0x4bf34fefe6acafd1, 0x94cd484f159e3501, 0xd32b068935cd243e, 0xfa5243ea18d745cf) ERROR: LoadError: Some tests did not pass: 194 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/VariantCallFormat/DDn3I/test/vcf.jl:1 in expression starting at /home/pkgeval/.julia/packages/VariantCallFormat/DDn3I/test/runtests.jl:1 Testing failed after 80.02s ERROR: LoadError: Package VariantCallFormat errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2673 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2522 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:308 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:330 [14] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 143.65s: package has test failures