Package evaluation of NeighborhoodApproximationIndex on Julia 1.13.0-DEV.1072 (de815ed1fa*) started at 2025-09-03T19:08:28.580 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.25s ################################################################################ # Installation # Installing NeighborhoodApproximationIndex... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [73dc1408] + NeighborhoodApproximationIndex v0.4.1 Updating `~/.julia/environments/v1.13/Manifest.toml` ⌅ [324d7699] + CategoricalArrays v0.10.8 [34da2185] + Compat v4.18.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [842dd82b] + InlineStrings v1.4.5 ⌅ [6d0fbc77] + Intersections v0.2.8 ⌅ [b20bd276] + InvertedFiles v0.2.2 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [5d8de97f] + KCenters v0.6.1 [b964fa9f] + LaTeXStrings v1.4.0 ⌅ [7f8f8fb0] + LearnBase v0.3.0 [2ab3a3ac] + LogExpFunctions v0.3.29 ⌃ [9920b226] + MLDataPattern v0.5.4 [cc2ba9b6] + MLDataUtils v0.5.4 [66a33bbf] + MLLabelUtils v0.5.7 [dbb5928d] + MappedArrays v0.4.2 [e1d29d7a] + Missings v1.2.0 [73dc1408] + NeighborhoodApproximationIndex v0.4.1 [bac558e1] + OrderedCollections v1.8.1 [d96e819e] + Parameters v0.12.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 ⌅ [08abe8d2] + PrettyTables v2.4.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 ⌅ [0e966ebe] + SearchModels v0.3.3 [91c51154] + SentinelArrays v1.4.8 ⌅ [053f045d] + SimilaritySearch v0.8.20 [a2af1166] + SortingAlgorithms v1.2.2 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3a884ed6] + UnPack v1.0.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 3.9s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 200.49s ################################################################################ # Testing # Testing NeighborhoodApproximationIndex Status `/tmp/jl_cSOPIR/Project.toml` ⌅ [6d0fbc77] Intersections v0.2.8 ⌅ [b20bd276] InvertedFiles v0.2.2 ⌅ [5d8de97f] KCenters v0.6.1 [73dc1408] NeighborhoodApproximationIndex v0.4.1 [d96e819e] Parameters v0.12.3 ⌅ [0e966ebe] SearchModels v0.3.3 ⌅ [053f045d] SimilaritySearch v0.8.20 ⌅ [2913bbd2] StatsBase v0.33.21 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_cSOPIR/Manifest.toml` ⌅ [324d7699] CategoricalArrays v0.10.8 [34da2185] Compat v4.18.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [842dd82b] InlineStrings v1.4.5 ⌅ [6d0fbc77] Intersections v0.2.8 ⌅ [b20bd276] InvertedFiles v0.2.2 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [5d8de97f] KCenters v0.6.1 [b964fa9f] LaTeXStrings v1.4.0 ⌅ [7f8f8fb0] LearnBase v0.3.0 [2ab3a3ac] LogExpFunctions v0.3.29 ⌃ [9920b226] MLDataPattern v0.5.4 [cc2ba9b6] MLDataUtils v0.5.4 [66a33bbf] MLLabelUtils v0.5.7 [dbb5928d] MappedArrays v0.4.2 [e1d29d7a] Missings v1.2.0 [73dc1408] NeighborhoodApproximationIndex v0.4.1 [bac558e1] OrderedCollections v1.8.1 [d96e819e] Parameters v0.12.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 ⌅ [08abe8d2] PrettyTables v2.4.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 ⌅ [0e966ebe] SearchModels v0.3.3 [91c51154] SentinelArrays v1.4.8 ⌅ [053f045d] SimilaritySearch v0.8.20 [a2af1166] SortingAlgorithms v1.2.2 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 ⌅ [2913bbd2] StatsBase v0.33.21 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3a884ed6] UnPack v1.0.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... [ Info: ********************* JIT warming ********************* [ Info: creating gold standard 0.308119 seconds (279.50 k allocations: 15.376 MiB, 99.93% compilation time) SearchModels> search params iter=0, tol=-1.0, initialpopulation=16, maxpopulation=16, bsize=4, mutbsize=16, crossbsize=8 SearchModels iteration 1> population: 12, bsize: 4, queue: 14, observed: 26, best-error: (visited = (7.0, 9.666666666666666, 10.0), radius = (4.037323474884033, 7.794575797186957, 12.36225414276123), recall = 0.9666666666666666, searchtime = 0.03131804) worst-error: (visited = (7.0, 8.444444444444445, 10.0), radius = (3.5447793006896973, 7.088892565833198, 12.36225414276123), recall = 0.8444444444444446, searchtime = 2.2932222222222223e-6) SearchModels iteration 2> population: 16, bsize: 4, queue: 12, observed: 38, best-error: (visited = (9.0, 9.555555555555555, 10.0), radius = (4.037323474884033, 7.794575797186957, 12.36225414276123), recall = 0.9555555555555557, searchtime = 2.2932222222222223e-6) worst-error: (visited = (10.0, 10.0, 10.0), radius = (4.037323474884033, 7.794575797186957, 12.36225414276123), recall = 1.0, searchtime = 2.428888888888889e-6) SearchModels iteration 3> population: 16, bsize: 4, queue: 13, observed: 51, best-error: (visited = (9.0, 9.555555555555555, 10.0), radius = (4.037323474884033, 7.794575797186957, 12.36225414276123), recall = 0.9555555555555557, searchtime = 2.2932222222222223e-6) worst-error: (visited = (9.0, 9.777777777777779, 10.0), radius = (3.5447793006896973, 7.652858946058485, 12.36225414276123), recall = 0.9777777777777779, searchtime = 2.063333333333333e-6) SearchModels iteration 4> population: 16, bsize: 4, queue: 3, observed: 54, best-error: (visited = (9.0, 9.555555555555555, 10.0), radius = (4.037323474884033, 7.794575797186957, 12.36225414276123), recall = 0.9555555555555557, searchtime = 2.2932222222222223e-6) worst-error: (visited = (9.0, 9.777777777777779, 10.0), radius = (3.5447793006896973, 7.652858946058485, 12.36225414276123), recall = 0.9777777777777779, searchtime = 2.1688888888888887e-6) SearchModels iteration 5> population: 16, bsize: 4, queue: 1, observed: 55, best-error: (visited = (8.0, 9.555555555555555, 10.0), radius = (4.037323474884033, 7.5866786109076605, 12.36225414276123), recall = 0.9555555555555557, searchtime = 2.2444444444444445e-6) worst-error: (visited = (9.0, 9.777777777777779, 10.0), radius = (3.5447793006896973, 7.652858946058485, 12.36225414276123), recall = 0.9777777777777779, searchtime = 2.1688888888888887e-6) SearchModels iteration 6> population: 16, bsize: 4, queue: 4, observed: 59, best-error: (visited = (9.0, 9.555555555555555, 10.0), radius = (4.037323474884033, 7.794575797186957, 12.36225414276123), recall = 0.9555555555555557, searchtime = 2.2932222222222223e-6) worst-error: (visited = (9.0, 9.777777777777779, 10.0), radius = (3.5447793006896973, 7.652858946058485, 12.36225414276123), recall = 0.9777777777777779, searchtime = 2.1688888888888887e-6) SearchModels iteration 7> population: 16, bsize: 4, queue: 0, observed: 59, best-error: (visited = (8.0, 9.555555555555555, 10.0), radius = (4.037323474884033, 7.5866786109076605, 12.36225414276123), recall = 0.9555555555555557, searchtime = 2.2444444444444445e-6) worst-error: (visited = (9.0, 9.777777777777779, 10.0), radius = (4.037323474884033, 7.794575797186957, 12.36225414276123), recall = 0.9777777777777779, searchtime = 2.266666666666667e-6) SearchModels iteration 8> population: 16, bsize: 4, queue: 1, observed: 60, best-error: (visited = (9.0, 9.555555555555555, 10.0), radius = (4.037323474884033, 7.23060941696167, 12.36225414276123), recall = 0.9555555555555557, searchtime = 2.0766666666666665e-6) worst-error: (visited = (9.0, 9.777777777777779, 10.0), radius = (4.037323474884033, 7.794575797186957, 12.36225414276123), recall = 0.9777777777777779, searchtime = 2.266666666666667e-6) SearchModels iteration 9> population: 16, bsize: 4, queue: 0, observed: 60, best-error: (visited = (8.0, 9.555555555555555, 10.0), radius = (4.037323474884033, 7.794575797186957, 12.36225414276123), recall = 0.9555555555555557, searchtime = 2.0744444444444444e-6) worst-error: (visited = (9.0, 9.777777777777779, 10.0), radius = (4.037323474884033, 7.794575797186957, 12.36225414276123), recall = 0.9777777777777779, searchtime = 2.266666666666667e-6) SearchModels iteration 10> population: 16, bsize: 4, queue: 0, observed: 60, best-error: (visited = (8.0, 9.555555555555555, 10.0), radius = (4.037323474884033, 7.794575797186957, 12.36225414276123), recall = 0.9555555555555557, searchtime = 2.0744444444444444e-6) worst-error: (visited = (9.0, 9.777777777777779, 10.0), radius = (4.037323474884033, 7.794575797186957, 12.36225414276123), recall = 0.9777777777777779, searchtime = 2.266666666666667e-6) SearchModels iteration 11> population: 16, bsize: 4, queue: 0, observed: 60, best-error: (visited = (9.0, 9.555555555555555, 10.0), radius = (4.037323474884033, 7.794575797186957, 12.36225414276123), recall = 0.9555555555555557, searchtime = 2.2932222222222223e-6) worst-error: (visited = (9.0, 9.777777777777779, 10.0), radius = (4.037323474884033, 7.794575797186957, 12.36225414276123), recall = 0.9777777777777779, searchtime = 2.266666666666667e-6) SearchModels iteration 12> population: 16, bsize: 4, queue: 0, observed: 60, best-error: (visited = (8.0, 9.555555555555555, 10.0), radius = (4.037323474884033, 7.5866786109076605, 12.36225414276123), recall = 0.9555555555555557, searchtime = 2.2444444444444445e-6) worst-error: (visited = (9.0, 9.777777777777779, 10.0), radius = (4.037323474884033, 7.794575797186957, 12.36225414276123), recall = 0.9777777777777779, searchtime = 2.266666666666667e-6) SearchModels iteration 13> population: 16, bsize: 4, queue: 0, observed: 60, best-error: (visited = (8.0, 9.555555555555555, 10.0), radius = (4.037323474884033, 7.794575797186957, 12.36225414276123), recall = 0.9555555555555557, searchtime = 2.0744444444444444e-6) worst-error: (visited = (9.0, 9.777777777777779, 10.0), radius = (4.037323474884033, 7.794575797186957, 12.36225414276123), recall = 0.9777777777777779, searchtime = 2.266666666666667e-6) SearchModels iteration 14> population: 16, bsize: 4, queue: 0, observed: 60, best-error: (visited = (9.0, 9.555555555555555, 10.0), radius = (4.037323474884033, 7.794575797186957, 12.36225414276123), recall = 0.9555555555555557, searchtime = 2.2932222222222223e-6) worst-error: (visited = (9.0, 9.777777777777779, 10.0), radius = (4.037323474884033, 7.794575797186957, 12.36225414276123), recall = 0.9777777777777779, searchtime = 2.266666666666667e-6) SearchModels iteration 15> population: 16, bsize: 4, queue: 1, observed: 61, best-error: (visited = (8.0, 9.555555555555555, 10.0), radius = (4.037323474884033, 7.5866786109076605, 12.36225414276123), recall = 0.9555555555555557, searchtime = 2.2444444444444445e-6) worst-error: (visited = (9.0, 9.777777777777779, 10.0), radius = (4.037323474884033, 7.794575797186957, 12.36225414276123), recall = 0.9777777777777779, searchtime = 2.266666666666667e-6) SearchModels> reached maximum number of iterations 16 NeighborhoodApproximationIndex.jl: Error During Test at /home/pkgeval/.julia/packages/NeighborhoodApproximationIndex/YRR6k/test/runtests.jl:55 Got exception outside of a @test MethodError: no method matching InvertedFiles.BinaryInvertedFile(::Int64, ::JaccardDistance, ::Type{Int32}) The type `InvertedFiles.BinaryInvertedFile` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: InvertedFiles.BinaryInvertedFile(::Any, ::Any, ::Any, !Matched::Any) @ InvertedFiles ~/.julia/packages/InvertedFiles/rOBOm/src/binvfile.jl:19 InvertedFiles.BinaryInvertedFile(::Integer, ::Any) @ InvertedFiles ~/.julia/packages/InvertedFiles/rOBOm/src/binvfile.jl:44 InvertedFiles.BinaryInvertedFile(::Integer) @ InvertedFiles ~/.julia/packages/InvertedFiles/rOBOm/src/binvfile.jl:44 ... Stacktrace: [1] KnrIndex(dist::SqL2Distance, db::MatrixDatabase{Matrix{Float32}}; invfiletype::Type{InvertedFiles.BinaryInvertedFile}, invfiledist::JaccardDistance, refs::MatrixDatabase{Matrix{Float32}}, centers::Nothing, kbuild::Int64, ksearch::Int64, centersrecall::Float64, ordering::DistanceOrdering, pools::Nothing, parallel_block::Int64, verbose::Bool) @ NeighborhoodApproximationIndex ~/.julia/packages/NeighborhoodApproximationIndex/YRR6k/src/knr.jl:244 [2] kwcall(::@NamedTuple{kbuild::Int64, ksearch::Int64, parallel_block::Int64, centersrecall::Float64, refs::MatrixDatabase{Matrix{Float32}}, ordering::DistanceOrdering}, ::Type{KnrIndex}, dist::SqL2Distance, db::MatrixDatabase{Matrix{Float32}}) @ NeighborhoodApproximationIndex ~/.julia/packages/NeighborhoodApproximationIndex/YRR6k/src/knr.jl:215 [3] macro expansion @ ./timing.jl:461 [inlined] [4] runtest(; dim::Int64, n::Int64, m::Int64, numcenters::Int64, k::Int64, centersrecall::Float64, kbuild::Int64, ksearch::Int64, parallel_block::Int64, ordering::DistanceOrdering, minrecall::Float64) @ Main ~/.julia/packages/NeighborhoodApproximationIndex/YRR6k/test/runtests.jl:17 [5] kwcall(::@NamedTuple{dim::Int64, n::Int64, m::Int64, numcenters::Int64, k::Int64, centersrecall::Float64}, ::typeof(runtest)) @ Main ~/.julia/packages/NeighborhoodApproximationIndex/YRR6k/test/runtests.jl:5 [6] top-level scope @ ~/.julia/packages/NeighborhoodApproximationIndex/YRR6k/test/runtests.jl:56 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1945 [inlined] [8] macro expansion @ ~/.julia/packages/NeighborhoodApproximationIndex/YRR6k/test/runtests.jl:58 [inlined] [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:309 [10] top-level scope @ none:6 [11] eval(m::Module, e::Any) @ Core ./boot.jl:489 [12] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [13] _start() @ Base ./client.jl:563 Test Summary: | Error Total Time NeighborhoodApproximationIndex.jl | 1 1 23.5s RNG of the outermost testset: Random.Xoshiro(0x00d7cbda68824e9c, 0x106f186f73408e39, 0x3cf4797c5680ee42, 0xe11f2894763694a2, 0x8ac590a5ae46b0ff) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/NeighborhoodApproximationIndex/YRR6k/test/runtests.jl:55 Testing failed after 52.29s ERROR: LoadError: Package NeighborhoodApproximationIndex errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2673 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2522 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:308 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:330 [14] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 287.72s: package tests unexpectedly errored