Package evaluation of MixedModels on Julia 1.13.0-DEV.1072 (de815ed1fa*) started at 2025-09-03T21:31:06.326 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.39s ################################################################################ # Installation # Installing MixedModels... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [ff71e718] + MixedModels v5.0.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.2 [69666777] + Arrow v2.8.0 [31f734f8] + ArrowTypes v2.3.0 [093aae92] + BSplineKit v0.19.0 [aae01518] + BandedMatrices v1.9.4 [c3b6d118] + BitIntegers v0.3.5 [fa961155] + CEnum v0.5.0 [5ba52731] + CodecLz4 v0.4.6 [6b39b394] + CodecZstd v0.8.6 [861a8166] + Combinatorics v1.0.3 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [85a47980] + Dictionaries v0.4.5 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [442a2c76] + FastGaussQuadrature v1.0.2 [1a297f60] + FillArrays v1.13.0 [f6369f11] + ForwardDiff v1.1.0 [38e38edf] + GLM v1.9.0 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [313cdc1a] + Indexing v1.1.1 [842dd82b] + InlineStrings v1.4.5 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [0f8b85d8] + JSON3 v1.14.3 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [ff71e718] + MixedModels v5.0.2 [7e9fb7ac] + MixedModelsDatasets v0.1.2 [78c3b35d] + Mocking v0.8.1 [76087f3c] + NLopt v1.2.1 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [545c379f] + RegressionFormulae v0.1.4 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [03a91e81] + SplitApplyCombine v1.2.3 [aedffcd0] + Static v1.2.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [3eaba693] + StatsModels v0.7.6 [354b36f9] + StringViews v1.3.5 [856f2bd8] + StructTypes v1.11.0 [dc5dba14] + TZJData v1.5.0+2025b [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [f269a46b] + TimeZones v1.22.0 [3bb67fe8] + TranscodingStreams v0.11.3 [9d95f2ec] + TypedTables v1.4.6 [5ced341a] + Lz4_jll v1.10.1+0 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.8.12 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.66.0+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.73s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 98.25s ################################################################################ # Testing # Testing MixedModels Status `/tmp/jl_vTFivO/Project.toml` [4c88cf16] Aqua v0.8.14 [69666777] Arrow v2.8.0 [093aae92] BSplineKit v0.19.0 [324d7699] CategoricalArrays v1.0.1 [34da2185] Compat v4.18.0 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.1 [31c24e10] Distributions v0.25.120 [7d51a73a] ExplicitImports v1.13.2 [6a86dc24] FiniteDiff v2.28.1 [f6369f11] ForwardDiff v1.1.0 [38e38edf] GLM v1.9.0 [0f8b85d8] JSON3 v1.14.3 [ff71e718] MixedModels v5.0.2 [7e9fb7ac] MixedModelsDatasets v0.1.2 [76087f3c] NLopt v1.2.1 [0a7d04aa] PRIMA v0.2.4 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [92933f4c] ProgressMeter v1.11.0 [545c379f] RegressionFormulae v0.1.4 [860ef19b] StableRNGs v1.0.3 [90137ffa] StaticArrays v1.9.15 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [3eaba693] StatsModels v0.7.6 [856f2bd8] StructTypes v1.11.0 [fd094767] Suppressor v0.2.8 [bd369af6] Tables v1.12.1 [9d95f2ec] TypedTables v1.4.6 [b77e0a4c] InteractiveUtils v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_vTFivO/Manifest.toml` [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [4fba245c] ArrayInterface v7.20.0 [4c555306] ArrayLayouts v1.11.2 [69666777] Arrow v2.8.0 [31f734f8] ArrowTypes v2.3.0 [093aae92] BSplineKit v0.19.0 [aae01518] BandedMatrices v1.9.4 [c3b6d118] BitIntegers v0.3.5 [fa961155] CEnum v0.5.0 [324d7699] CategoricalArrays v1.0.1 [5ba52731] CodecLz4 v0.4.6 [6b39b394] CodecZstd v0.8.6 [861a8166] Combinatorics v1.0.3 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [85a47980] Dictionaries v0.4.5 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [7d51a73a] ExplicitImports v1.13.2 [e2ba6199] ExprTools v0.1.10 [442a2c76] FastGaussQuadrature v1.0.2 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.28.1 [f6369f11] ForwardDiff v1.1.0 [38e38edf] GLM v1.9.0 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [313cdc1a] Indexing v1.1.1 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [ff71e718] MixedModels v5.0.2 [7e9fb7ac] MixedModelsDatasets v0.1.2 [78c3b35d] Mocking v0.8.1 [76087f3c] NLopt v1.2.1 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [0a7d04aa] PRIMA v0.2.4 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 ⌅ [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [545c379f] RegressionFormulae v0.1.4 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.5.1 [03a91e81] SplitApplyCombine v1.2.3 [860ef19b] StableRNGs v1.0.3 [aedffcd0] Static v1.2.0 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [3eaba693] StatsModels v0.7.6 [892a3eda] StringManipulation v0.4.1 [354b36f9] StringViews v1.3.5 [856f2bd8] StructTypes v1.11.0 [fd094767] Suppressor v0.2.8 [dc5dba14] TZJData v1.5.0+2025b [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [f269a46b] TimeZones v1.22.0 [3bb67fe8] TranscodingStreams v0.11.3 [c3b1956e] TypeUtils v1.10.0 [9d95f2ec] TypedTables v1.4.6 [5ced341a] Lz4_jll v1.10.1+0 [079eb43e] NLopt_jll v2.10.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [eead6e0c] PRIMA_jll v0.7.1+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.8.12 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.66.0+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 18645.5 ms ✓ StatsModels 14085.7 ms ✓ GLM 2 dependencies successfully precompiled in 37 seconds. 53 already precompiled. Precompiling packages... 5241.3 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 7 seconds. 49 already precompiled. Precompiling packages... 1257.0 ms ✓ ArrowTypes 1048.8 ms ✓ InlineStrings → ParsersExt 14690.3 ms ✓ JSON3 1922.0 ms ✓ CodecLz4 111217.0 ms ✓ BSplineKit 3408.0 ms ✓ RegressionFormulae 872.4 ms ✓ InlineStrings → ArrowTypesExt 1284.8 ms ✓ JSON3 → JSON3ArrowExt 16910.6 ms ✓ Arrow 10251.6 ms ✓ MixedModelsDatasets 135583.2 ms ✓ MixedModels 31522.2 ms ✓ MixedModels → MixedModelsForwardDiffExt 12 dependencies successfully precompiled in 332 seconds. 127 already precompiled. 1 dependency had output during precompilation: ┌ Arrow │ WARNING: Constructor for type "Type" was extended in `Flatbuf` without explicit qualification or import. │ NOTE: Assumed "Type" refers to `Base.Type`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Type end`. │ Hint: To silence the warning, qualify `Type` as `Base.Type` in the method signature or explicitly `import Base: Type`. └ ┌ Info: Julia Version 1.13.0-DEV.1072 │ Commit de815ed1fa* (2025-09-01 18:55 UTC) │ Platform Info: │ OS: Linux (x86_64-linux-gnu) │ CPU: 128 × AMD EPYC 7502 32-Core Processor │ WORD_SIZE: 64 │ LLVM: libLLVM-20.1.8 (ORCJIT, znver2) │ GC: Built with stock GC │ Threads: 1 default, 0 interactive, 1 GC (on 1 virtual cores) │ Environment: │ JULIA_CPU_THREADS = 1 │ JULIA_NUM_PRECOMPILE_TASKS = 1 │ JULIA_PKG_PRECOMPILE_AUTO = 0 │ JULIA_PKGEVAL = true │ JULIA_DEPOT_PATH = /home/pkgeval/.julia:/usr/local/share/julia: │ JULIA_NUM_THREADS = 1 └ JULIA_LOAD_PATH = @:/tmp/jl_vTFivO [ Info: LBTConfig([ILP64] libopenblas64_.so) Test Summary: | Pass Total Time Aqua | 9 9 4m13.6s Test Summary: | Pass Total Time ExplicitImports | 2 2 1m10.9s Test Summary: | Pass Total Time average | 1 1 0.1s Test Summary: | Pass Total Time densify | 3 3 2.5s Test Summary: | Pass Total Time isconstant | 13 13 2.6s Test Summary: | Pass Total Time PCA | 3 3 48.0s Test Summary: | Pass Total Time formula | 2 2 37.4s Test Summary: | Pass Total Time formula misspecification | 8 8 18.7s Test Summary: | Pass Total Time non-unicode function aliases for exports | 2 2 0.0s Test Summary: | Pass Total Time fullranknumeric | 1 1 1.4s Test Summary: | Pass Total Time fullrankcategorical | 2 2 5.8s Test Summary: | Pass Total Time dependentcolumn | 4 4 1.2s Test Summary: | Pass Total Time qr missing cells | 2 2 0.1s Test Summary: | Pass Total Time zero columns in X | 2 2 0.0s Test Summary: | Pass Total Time UBlk | 24 24 18.5s Test Summary: | Pass Total Time mul! | 36 36 2.1s Test Summary: | Pass Total Time reweight! | 2 2 11.7s Test Summary: | Pass Total Time rankupdate! | 2 2 4.6s Test Summary: | Pass Total Time lmulλ! | 1 1 14.2s Test Summary: | Pass Total Time Xymat | 10 10 1.3s Test Summary: | Pass Broken Total Time XymatSparse | 12 1 13 1m03.9s Precompiling packages... 27693.2 ms ✓ PrettyTables 67746.1 ms ✓ DataFrames 2 dependencies successfully precompiled in 97 seconds. 33 already precompiled. Test Summary: | Pass Total Time scalarReMat | 39 39 16.9s Test Summary: | Pass Total Time RandomEffectsTerm | 18 18 26.8s Test Summary: | Pass Total Time random effects term syntax | 24 24 35.2s Precompiling packages... 1489.5 ms ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 5734.3 ms ✓ CategoricalArrays → CategoricalArraysArrowExt 2 dependencies successfully precompiled in 7 seconds. 53 already precompiled. Precompiling packages... 1296.7 ms ✓ CategoricalArrays → CategoricalArraysStructTypesExt 1 dependency successfully precompiled in 1 seconds. 14 already precompiled. Precompiling packages... 3097.3 ms ✓ CategoricalArrays → CategoricalArraysStatsBaseExt 1 dependency successfully precompiled in 4 seconds. 32 already precompiled. Test Summary: | Pass Total Time Grouping | 1 1 0.6s Test Summary: | Pass Total Time Grouping pseudo-contrasts | 10 10 17.6s Test Summary: | Pass Broken Total Time Auto application of Grouping() | 36 3 39 17.5s Test Summary: | Pass Total Time LMM from MixedModel | 3 3 5.6s Test Summary: | Pass Total Time offset | 2 2 0.8s Test Summary: | Pass Total Time Dyestuff | 82 82 1m10.7s ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/VAn4y/src/MixedModelsNLoptExt.jl:132 ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/VAn4y/src/MixedModelsNLoptExt.jl:132 ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/VAn4y/src/MixedModelsNLoptExt.jl:132 ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/VAn4y/src/MixedModelsNLoptExt.jl:132 ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/VAn4y/src/MixedModelsNLoptExt.jl:132 ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/VAn4y/src/MixedModelsNLoptExt.jl:132 Test Summary: | Pass Total Time Dyestuff2 | 11 11 7.2s Test Summary: | Pass Total Time penicillin | 26 26 6.7s Test Summary: | Pass Total Time pastes | 22 22 7.7s Test Summary: | Pass Total Time InstEval | 21 21 3.9s ┌ Warning: optsum was saved with an older version of MixedModels.jl: consider resaving. └ @ MixedModels ~/.julia/packages/MixedModels/VAn4y/src/serialization.jl:124 ┌ Warning: optsum was saved with an older version of MixedModels.jl: consider resaving. └ @ MixedModels ~/.julia/packages/MixedModels/VAn4y/src/serialization.jl:124 ┌ Warning: optsum was saved with an older version of MixedModels.jl: consider resaving. └ @ MixedModels ~/.julia/packages/MixedModels/VAn4y/src/serialization.jl:124 ┌ Warning: optsum was saved with an older version of MixedModels.jl: consider resaving. └ @ MixedModels ~/.julia/packages/MixedModels/VAn4y/src/serialization.jl:124 Test Summary: | Pass Total Time sleep | 135 135 1m33.4s Test Summary: | Pass Total Time d3 | 6 6 24.5s Test Summary: | Pass Total Time kb07 | 6 6 23.2s Test Summary: | Pass Total Time oxide | 1 1 12.9s Test Summary: | Pass Total Time Rank deficient | 7 7 5.5s Test Summary: | Pass Total Time coeftable | 1 1 0.0s Test Summary: | Pass Total Time wts | 3 3 3.5s Test Summary: | Pass Total Time unifying ReMat eltypes | 3 3 4.0s Test Summary: | Pass Total Time recovery from misscaling | 2 2 10.2s Test Summary: | Pass Total Time methods we don't define | 4 4 0.7s Test Summary: | Pass Total Time GLMM from MixedModel | 2 2 13.9s Test Summary: | Pass Total Time Type for instance | 9 9 0.4s Test Summary: | Pass Total Time contra | 41 41 19.8s Test Summary: | Pass Total Time cbpp | 19 19 23.1s Test Summary: | Pass Total Time verbagg | 4 4 18.2s Test Summary: | Pass Total Time grouseticks | 8 8 2m39.5s Test Summary: | Pass Total Time dispersion | 3 3 16.3s Test Summary: | Pass Total Time mmec | 4 4 4.2s Test Summary: | Pass Total Time GLMM saveoptsum | 6 6 3.0s Test Summary: | Pass Total Time Bad initial value | 2 2 14.8s Test Summary: | Pass Total Time GHnorm | 5 5 0.4s Test Summary: | Pass Total Time linear, and lmm wrapper | 8 8 0.8s Test Summary: | Pass Total Time generalized | 1 1 13.6s Test Summary: | Pass Total Time Normal-IdentityLink | 2 2 0.2s Test Summary: | Pass Total Time Normal Distribution GLMM | 1 1 2.4s Test Summary: | Pass Total Time Missing Omit | 2 2 4.4s Test Summary: | Pass Total Time isnested | 5 5 8.7s Test Summary: | Pass Total Time likelihoodratio test | 22 22 33.5s Test Summary: | Pass Total Time simulate!(::MixedModel) | 9 9 24.5s ┌ Warning: Fixed-effects matrix is rank deficient └ @ MixedModels ~/.julia/packages/MixedModels/VAn4y/src/Xymat.jl:41 Test Summary: | Pass Total Time bootstrap | 52 52 2m56.0s Test Summary: | Pass Total Time show and summary | 7 7 14.0s Test Summary: | Pass Total Time markdown | 10 10 11.6s Test Summary: | Pass Total Time html | 3 3 0.4s Test Summary: | Pass Total Time latex | 7 7 0.4s Test Summary: | Pass Total Time opt limits | 6 6 1.6s Test Summary: | Pass Total Time simulate[!](::AbstractVector) | 11 11 26.2s Test Summary: | Pass Total Time predict | 52 52 1m26.8s Test Summary: | Pass Total Time fixed sigma | 8 8 3.9s Precompiling packages... 1523.6 ms ✓ PRIMA_jll 1645.1 ms ✓ PRIMA 2 dependencies successfully precompiled in 3 seconds. 9 already precompiled. Precompiling packages... 34245.5 ms ✓ MixedModels → MixedModelsPRIMAExt 1 dependency successfully precompiled in 38 seconds. 142 already precompiled. Test Summary: | Pass Total Time PRIMA | 25 25 1m24.4s Test Summary: | Pass Total Time ForwardDiff | 6 6 1m45.3s Precompiling packages... 3803.5 ms ✓ ArrayInterface → ArrayInterfaceBandedMatricesExt 1 dependency successfully precompiled in 4 seconds. 17 already precompiled. Precompiling packages... 1533.3 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 3761.3 ms ✓ FiniteDiff → FiniteDiffBandedMatricesExt Info Given MixedModelsFiniteDiffExt was explicitly requested, output will be shown live   ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ======================================================================================  cmd: /opt/julia/bin/julia 199 running 1 of 1  signal (10): User defined signal 1 jl_svecref at /source/src/julia.h:1288 [inlined] obvious_subtype at /source/src/subtype.c:2131 ijl_subtype_env at /source/src/subtype.c:2269 intersect at /source/src/subtype.c:4150 intersect_tuple at /source/src/subtype.c:3694 intersect at /source/src/subtype.c:4215 intersect_all at /source/src/subtype.c:4357 jl_type_intersection_env_s at /source/src/subtype.c:4605 jl_typemap_intersection_node_visitor at /source/src/typemap.c:543 jl_typemap_intersection_visitor at /source/src/typemap.c:805 jl_typemap_intersection_visitor at /source/src/typemap.c:791 jl_typemap_intersection_visitor at /source/src/typemap.c:791 jl_typemap_intersection_visitor at /source/src/typemap.c:726 ml_matches at /source/src/gf.c:4812 ml_matches at /source/src/gf.c:4722 [inlined] ijl_matching_methods at /source/src/gf.c:3124 [inlined] ijl_matching_methods at /source/src/gf.c:3111 _methods_by_ftype at ./runtime_internals.jl:1595 [inlined] verify_call at ./../usr/share/julia/Compiler/src/reinfer.jl:568 verify_method at ./../usr/share/julia/Compiler/src/reinfer.jl:241 verify_method_graph at ./../usr/share/julia/Compiler/src/reinfer.jl:115 _insert_backedges at ./../usr/share/julia/Compiler/src/reinfer.jl:88 _insert_backedges at ./../usr/share/julia/Compiler/src/reinfer.jl:85 [inlined] insert_backedges at ./../usr/share/julia/Compiler/src/reinfer.jl:78 _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2382 [inlined] ijl_call_in_typeinf_world at /source/src/gf.c:555 insert_backedges_typeinf at ./../usr/share/julia/Compiler/src/reinfer.jl:651 [inlined] #_include_from_serialized#880 at ./loading.jl:1291 _include_from_serialized at ./loading.jl:1247 [inlined] #_require_search_from_serialized#899 at ./loading.jl:2105 _require_search_from_serialized at ./loading.jl:1999 [inlined] __require_prelocked at ./loading.jl:2618 _require_prelocked at ./loading.jl:2484 macro expansion at ./loading.jl:2412 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2376 jfptr___require_69642.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2382 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:902 require at ./loading.jl:2352 [inlined] eval_import_path at ./module.jl:36 [inlined] eval_import_path_all at ./module.jl:60 _eval_import at ./module.jl:101 _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2382 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:690 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:772 jl_eval_module_expr at /source/src/toplevel.c:195 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:657 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 include_string at ./loading.jl:2865 _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 _include at ./loading.jl:2925 include at ./Base.jl:308 include_package_for_output at ./loading.jl:3019 jfptr_include_package_for_output_73106.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2382 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:690 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:772 jl_toplevel_eval_flex at /source/src/toplevel.c:712 ijl_toplevel_eval at /source/src/toplevel.c:784 ijl_toplevel_eval_in at /source/src/toplevel.c:829 eval at ./boot.jl:489 include_string at ./loading.jl:2865 include_string at ./loading.jl:2875 [inlined] exec_options at ./client.jl:328 _start at ./client.jl:563 jfptr__start_68106.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2382 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x70f25d695249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file)   ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ==============================================================  32665.9 ms ✓ MixedModels → MixedModelsFiniteDiffExt 3 dependencies successfully precompiled in 41 seconds. 149 already precompiled. 1 dependency had output during precompilation: ┌ MixedModels → MixedModelsFiniteDiffExt │ [Output was shown above] └ Test Summary: | Pass Total Time FiniteDiff | 5 5 47.7s Testing MixedModels tests passed Testing completed after 2580.13s PkgEval terminated after 2713.44s: test duration exceeded the time limit