Package evaluation of Crispulator on Julia 1.13.0-DEV.1072 (de815ed1fa*) started at 2025-09-03T21:20:29.466 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 11.07s ################################################################################ # Installation # Installing Crispulator... Resolving package versions... Installed CompositionsBase ──────────── v0.1.2 Installed MacroTools ────────────────── v0.5.16 Installed FilePathsBase ─────────────── v0.9.24 Installed ColorBrewer ───────────────── v0.4.1 Installed FillArrays ────────────────── v1.13.0 Installed Rmath_jll ─────────────────── v0.4.3+0 Installed CommonSolve ───────────────── v0.2.4 Installed DataStructures ────────────── v0.18.22 Installed InlineStrings ─────────────── v1.4.5 Installed Adapt ─────────────────────── v4.3.0 Installed ConstructionBase ──────────── v1.6.0 Installed HypergeometricFunctions ───── v0.3.28 Installed KernelDensity ─────────────── v0.6.10 Installed AliasTables ───────────────── v1.1.3 Installed LazyGrids ─────────────────── v0.5.0 Installed MKL_jll ───────────────────── v2025.2.0+0 Installed OrderedCollections ────────── v1.8.1 Installed oneTBB_jll ────────────────── v2022.0.0+0 Installed CodecZlib ─────────────────── v0.7.8 Installed TranscodingStreams ────────── v0.11.3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed DataAPI ───────────────────── v1.16.0 Installed Compat ────────────────────── v4.18.0 Installed Combinatorics ─────────────── v1.0.3 Installed StatsBase ─────────────────── v0.33.21 Installed Statistics ────────────────── v1.11.1 Installed InvertedIndices ───────────── v1.3.1 Installed HypothesisTests ───────────── v0.10.13 Installed IntelOpenMP_jll ───────────── v2025.2.0+0 Installed StatsAPI ──────────────────── v1.7.1 Installed PrecompileTools ───────────── v1.3.3 Installed StringEncodings ───────────── v0.3.7 Installed DataValueInterfaces ───────── v1.0.0 Installed ProgressMeter ─────────────── v1.11.0 Installed Colors ────────────────────── v0.13.1 Installed OffsetArrays ──────────────── v1.17.0 Installed CoupledFields ─────────────── v0.3.0 Installed Loess ─────────────────────── v0.6.4 Installed Measures ──────────────────── v0.3.2 Installed SentinelArrays ────────────── v1.4.8 Installed StaticArraysCore ──────────── v1.4.3 Installed TextWrap ──────────────────── v1.0.2 Installed IrrationalConstants ───────── v0.2.4 Installed Distances ─────────────────── v0.10.12 Installed AbstractFFTs ──────────────── v1.5.0 Installed StaticArrays ──────────────── v1.9.15 Installed QuadGK ────────────────────── v2.11.2 Installed ChainRulesCore ────────────── v1.26.0 Installed ColorTypes ────────────────── v0.12.1 Installed Contour ───────────────────── v0.6.3 Installed Ratios ────────────────────── v0.4.5 Installed AxisAlgorithms ────────────── v1.1.0 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Requires ──────────────────── v1.3.1 Installed StringManipulation ────────── v0.4.1 Installed YAML ──────────────────────── v0.4.14 Installed ArgParse ──────────────────── v1.2.0 Installed LogExpFunctions ───────────── v0.3.29 Installed JSON ──────────────────────── v0.21.4 Installed Roots ─────────────────────── v2.2.10 Installed PrettyTables ──────────────── v2.4.0 Installed Parsers ───────────────────── v2.8.3 Installed Interpolations ────────────── v0.16.2 Installed StatsFuns ─────────────────── v1.5.0 Installed Rmath ─────────────────────── v0.7.1 Installed WoodburyMatrices ──────────── v1.0.0 Installed Distributions ─────────────── v0.25.120 Installed Tables ────────────────────── v1.12.1 Installed PtrArrays ─────────────────── v1.3.0 Installed Reexport ──────────────────── v1.2.2 Installed SpecialFunctions ──────────── v2.5.1 Installed Missings ──────────────────── v1.2.0 Installed FixedPointNumbers ─────────── v0.8.5 Installed InverseFunctions ──────────── v0.1.17 Installed Preferences ───────────────── v1.5.0 Installed DataFrames ────────────────── v1.7.1 Installed Showoff ───────────────────── v1.0.3 Installed WeakRefStrings ────────────── v1.4.2 Installed PooledArrays ──────────────── v1.4.3 Installed FFTW_jll ──────────────────── v3.3.11+0 Installed JLLWrappers ───────────────── v1.7.1 Installed FFTW ──────────────────────── v1.9.0 Installed TableTraits ───────────────── v1.0.1 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed LaTeXStrings ──────────────── v1.4.0 Installed PDMats ────────────────────── v0.11.35 Installed Crayons ───────────────────── v4.1.1 Installed IndirectArrays ────────────── v1.0.0 Installed SortingAlgorithms ─────────── v1.2.2 Installed Hexagons ──────────────────── v0.2.0 Installed IterTools ─────────────────── v1.10.0 Installed CSV ───────────────────────── v0.10.15 Installed Grisu ─────────────────────── v1.0.2 Installed CategoricalArrays ─────────── v0.10.8 Installed WorkerUtilities ───────────── v1.6.1 Installed DocStringExtensions ───────── v0.9.5 Installed Accessors ─────────────────── v0.1.42 Installed Gadfly ────────────────────── v1.4.1 Installed Compose ───────────────────── v0.9.6 Installed Crispulator ───────────────── v0.5.1 Installing 5 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Rmath 119.6 KiB Installed artifact oneTBB 435.6 KiB Installed artifact FFTW 2.2 MiB Installed artifact Libiconv 1.9 MiB Updating `~/.julia/environments/v1.13/Project.toml` [39046a72] + Crispulator v0.5.1 Updating `~/.julia/environments/v1.13/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [c7e460c6] + ArgParse v1.2.0 [13072b0f] + AxisAlgorithms v1.1.0 [336ed68f] + CSV v0.10.15 ⌅ [324d7699] + CategoricalArrays v0.10.8 [d360d2e6] + ChainRulesCore v1.26.0 [944b1d66] + CodecZlib v0.7.8 [a2cac450] + ColorBrewer v0.4.1 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.0.3 [38540f10] + CommonSolve v0.2.4 [34da2185] + Compat v4.18.0 [a81c6b42] + Compose v0.9.6 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [7ad07ef1] + CoupledFields v0.3.0 [a8cc5b0e] + Crayons v4.1.1 [39046a72] + Crispulator v0.5.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [7a1cc6ca] + FFTW v1.9.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 [c91e804a] + Gadfly v1.4.1 [42e2da0e] + Grisu v1.0.2 [a1b4810d] + Hexagons v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 ⌅ [09f84164] + HypothesisTests v0.10.13 [9b13fd28] + IndirectArrays v1.0.0 [842dd82b] + InlineStrings v1.4.5 [a98d9a8b] + Interpolations v0.16.2 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v0.21.4 [5ab0869b] + KernelDensity v0.6.10 [b964fa9f] + LaTeXStrings v1.4.0 ⌅ [7031d0ef] + LazyGrids v0.5.0 [4345ca2d] + Loess v0.6.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [442fdcdd] + Measures v0.3.2 [e1d29d7a] + Missings v1.2.0 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 ⌅ [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 ⌅ [79098fc4] + Rmath v0.7.1 [f2b01f46] + Roots v2.2.10 [91c51154] + SentinelArrays v1.4.8 [992d4aef] + Showoff v1.0.3 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.0 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [b718987f] + TextWrap v1.0.2 [3bb67fe8] + TranscodingStreams v0.11.3 [ea10d353] + WeakRefStrings v1.4.2 [efce3f68] + WoodburyMatrices v1.0.0 [76eceee3] + WorkerUtilities v1.6.1 [ddb6d928] + YAML v0.4.14 [f5851436] + FFTW_jll v3.3.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [f50d1b31] + Rmath_jll v0.4.3+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.8.12 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.66.0+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 11.03s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4595.5 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompilation completed after 523.66s ################################################################################ # Testing # Testing Crispulator Status `/tmp/jl_GejV4e/Project.toml` [c7e460c6] ArgParse v1.2.0 [336ed68f] CSV v0.10.15 [a2cac450] ColorBrewer v0.4.1 [39046a72] Crispulator v0.5.1 [a93c6f00] DataFrames v1.7.1 ⌅ [864edb3b] DataStructures v0.18.22 [31c24e10] Distributions v0.25.120 [c91e804a] Gadfly v1.4.1 [c8e1da08] IterTools v1.10.0 [92933f4c] ProgressMeter v1.11.0 ⌅ [2913bbd2] StatsBase v0.33.21 [8ba89e20] Distributed v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_GejV4e/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [c7e460c6] ArgParse v1.2.0 [13072b0f] AxisAlgorithms v1.1.0 [336ed68f] CSV v0.10.15 ⌅ [324d7699] CategoricalArrays v0.10.8 [d360d2e6] ChainRulesCore v1.26.0 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.1 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.0.3 [38540f10] CommonSolve v0.2.4 [34da2185] Compat v4.18.0 [a81c6b42] Compose v0.9.6 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [7ad07ef1] CoupledFields v0.3.0 [a8cc5b0e] Crayons v4.1.1 [39046a72] Crispulator v0.5.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [7a1cc6ca] FFTW v1.9.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [53c48c17] FixedPointNumbers v0.8.5 [c91e804a] Gadfly v1.4.1 [42e2da0e] Grisu v1.0.2 [a1b4810d] Hexagons v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [09f84164] HypothesisTests v0.10.13 [9b13fd28] IndirectArrays v1.0.0 [842dd82b] InlineStrings v1.4.5 [a98d9a8b] Interpolations v0.16.2 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [5ab0869b] KernelDensity v0.6.10 [b964fa9f] LaTeXStrings v1.4.0 ⌅ [7031d0ef] LazyGrids v0.5.0 [4345ca2d] Loess v0.6.4 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [442fdcdd] Measures v0.3.2 [e1d29d7a] Missings v1.2.0 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 ⌅ [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c84ed2f1] Ratios v0.4.5 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 ⌅ [79098fc4] Rmath v0.7.1 [f2b01f46] Roots v2.2.10 [91c51154] SentinelArrays v1.4.8 [992d4aef] Showoff v1.0.3 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.0 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [b718987f] TextWrap v1.0.2 [3bb67fe8] TranscodingStreams v0.11.3 [ea10d353] WeakRefStrings v1.4.2 [efce3f68] WoodburyMatrices v1.0.0 [76eceee3] WorkerUtilities v1.6.1 [ddb6d928] YAML v0.4.14 [f5851436] FFTW_jll v3.3.11+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [856f044c] MKL_jll v2025.2.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 ⌅ [f50d1b31] Rmath_jll v0.4.3+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.8.12 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.66.0+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time kdrelationships.jl | 8 8 3.2s Test Summary: | Pass Total Time qualitymetrics.jl | 24 24 17.3s Test Summary: | Pass Total Time diffcrisprtransfection.jl | 2 2 12.6s Test Summary: | Pass Total Time processing.jl | 6 6 40.8s Test Summary: | Pass Total Time growth.jl | 2 2 3.4s Test Summary: | Pass Total Time selectionmethods.jl | 6 6 13.9s Test Summary: | Pass Total Time cmdline.jl | 4 4 5.3s [ Info: Constructing CSV Test Summary: | Total Time compare_methods.jl | 0 39.5s Test Summary: | Total Time facs_binning.jl | 0 9.0s Test Summary: | Total Time facs_binning_snr.jl | 0 2.1s Test Summary: | Total Time gen_plots.jl | 0 2m24.3s Test Summary: | Total Time growth_bottleneck_snr.jl | 0 4.8s Test Summary: | Total Time growth_bottlenecks.jl | 0 6.1s Test Summary: | Total Time growth_representation.jl | 0 3.5s [ Info: Constructing CSV Test Summary: | Total Time growth_sensitivity_library.jl | 0 5.7s Test Summary: | Total Time scan_rep_space.jl | 0 8.6s Testing Crispulator tests passed Testing completed after 350.32s PkgEval succeeded after 913.59s