Package evaluation of CTFlows on Julia 1.13.0-DEV.1072 (de815ed1fa*) started at 2025-09-03T14:38:16.857 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.55s ################################################################################ # Installation # Installing CTFlows... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [1c39547c] + CTFlows v0.8.8 Updating `~/.julia/environments/v1.13/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [13072b0f] + AxisAlgorithms v1.1.0 [54762871] + CTBase v0.16.4 [1c39547c] + CTFlows v0.8.8 [34c4fa32] + CTModels v0.6.5 [d360d2e6] + ChainRulesCore v1.26.0 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.5 [f6369f11] + ForwardDiff v1.1.0 [a98d9a8b] + Interpolations v0.16.2 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [d96e819e] + Parameters v0.12.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [ae029012] + Requires v1.3.1 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [3a884ed6] + UnPack v1.0.2 [efce3f68] + WoodburyMatrices v1.0.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Installation completed after 5.57s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 1373.03s ################################################################################ # Testing # Testing CTFlows Status `/tmp/jl_amnea6/Project.toml` [4c88cf16] Aqua v0.8.14 [54762871] CTBase v0.16.4 [1c39547c] CTFlows v0.8.8 [34c4fa32] CTModels v0.6.5 ⌅ [32681960] CTParser v0.5.1 [1dea7af3] OrdinaryDiffEq v6.102.0 [91a5bcdd] Plots v1.40.19 [37e2e46d] LinearAlgebra v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_amnea6/Manifest.toml` [47edcb42] ADTypes v1.17.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [4fba245c] ArrayInterface v7.20.0 [4c555306] ArrayLayouts v1.11.2 [13072b0f] AxisAlgorithms v1.1.0 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.3.0 [2a0fbf3d] CPUSummary v0.2.7 [54762871] CTBase v0.16.4 [1c39547c] CTFlows v0.8.8 [34c4fa32] CTModels v0.6.5 ⌅ [32681960] CTParser v0.5.1 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.30.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.187.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.7 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.12 [460bff9d] ExceptionUnwrapping v0.1.11 [7d51a73a] ExplicitImports v1.13.2 [d4d017d3] ExponentialUtilities v1.27.0 [e2ba6199] ExprTools v0.1.10 [55351af7] 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[d3d80556] LineSearches v7.4.0 [7ed4a6bd] LinearSolve v3.39.2 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [bb5d69b7] MaybeInplace v0.1.4 [739be429] MbedTLS v1.1.9 [442fdcdd] Measures v0.3.2 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [8913a72c] NonlinearSolve v4.10.0 [be0214bd] NonlinearSolveBase v1.14.0 [5959db7a] NonlinearSolveFirstOrder v1.7.0 [9a2c21bd] NonlinearSolveQuasiNewton v1.8.0 [26075421] NonlinearSolveSpectralMethods v1.3.0 [6fe1bfb0] OffsetArrays v1.17.0 [4d8831e6] OpenSSL v1.5.0 [bac558e1] OrderedCollections v1.8.1 [1dea7af3] OrdinaryDiffEq v6.102.0 [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.5.0 [6ad6398a] OrdinaryDiffEqBDF v1.10.1 [bbf590c4] OrdinaryDiffEqCore v1.32.0 [50262376] OrdinaryDiffEqDefault v1.8.0 [4302a76b] OrdinaryDiffEqDifferentiation v1.15.0 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v5.13.1+0 [8e850ede] nghttp2_jll v1.66.0+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 14602.9 ms ✓ CTModels 3114.5 ms ✓ Interpolations → InterpolationsForwardDiffExt 44594.6 ms ✓ CTFlows 3 dependencies successfully precompiled in 63 seconds. 52 already precompiled. Precompiling packages... 6356.7 ms ✓ Setfield 1762.1 ms ✓ TruncatedStacktraces 11657.3 ms ✓ SparseMatrixColorings 2007.7 ms ✓ PreallocationTools 39920.9 ms ✓ ExponentialUtilities 2716.6 ms ✓ SymbolicIndexingInterface 897.5 ms ✓ ADTypes → ADTypesChainRulesCoreExt 937.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 870.1 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 1688.5 ms ✓ Accessors → StaticArraysExt 8045.1 ms ✓ StaticArrayInterface 1249.5 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 52911.6 ms ✓ ExplicitImports 5080.5 ms ✓ FastGaussQuadrature 6313.3 ms ✓ LazyArrays 3371.5 ms ✓ FastPower → FastPowerForwardDiffExt 1633.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1898.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseMatrixColoringsExt 1395.4 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 5379.3 ms ✓ ExponentialUtilities → ExponentialUtilitiesStaticArraysExt 3914.0 ms ✓ RecursiveArrayTools 1885.0 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1156.4 ms ✓ CloseOpenIntervals 1335.9 ms ✓ LayoutPointers 3660.3 ms ✓ LazyArrays → LazyArraysStaticArraysExt 4494.0 ms ✓ NLSolversBase 1924.6 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 1861.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 24898.7 ms ✓ SciMLBase 1950.5 ms ✓ StrideArraysCore 6407.6 ms ✓ LineSearches 3490.1 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 6352.7 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 8512.5 ms ✓ SciMLJacobianOperators 2370.0 ms ✓ Polyester 20107.9 ms ✓ LinearSolve 10936.1 ms ✓ LineSearch 15654.1 ms ✓ NonlinearSolveBase 2613.7 ms ✓ FastBroadcast 6254.2 ms ✓ LinearSolve → LinearSolveEnzymeExt 10891.9 ms ✓ LinearSolve → LinearSolveSparseArraysExt 10253.8 ms ✓ LinearSolve → LinearSolveForwardDiffExt 3860.0 ms ✓ LineSearch → LineSearchLineSearchesExt 4083.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 4058.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 6970.9 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 4778.3 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 6090.9 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 8733.8 ms ✓ BracketingNonlinearSolve 2691.9 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 4348.0 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 6883.3 ms ✓ DiffEqBase 3955.7 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 20960.3 ms ✓ SimpleNonlinearSolve 4165.5 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 4271.5 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 5976.0 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 9928.4 ms ✓ OrdinaryDiffEqCore 3668.2 ms ✓ NonlinearSolveBase → NonlinearSolveBaseDiffEqBaseExt 4563.3 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveDiffEqBaseExt 4185.7 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 4182.8 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 16133.6 ms ✓ NonlinearSolveSpectralMethods 30224.4 ms ✓ NonlinearSolveQuasiNewton 47266.1 ms ✓ NonlinearSolveFirstOrder 8112.4 ms ✓ OrdinaryDiffEqStabilizedRK 5778.7 ms ✓ OrdinaryDiffEqFunctionMap 64567.6 ms ✓ OrdinaryDiffEqVerner 6367.4 ms ✓ OrdinaryDiffEqQPRK 6956.8 ms ✓ OrdinaryDiffEqSymplecticRK 10704.6 ms ✓ OrdinaryDiffEqLowOrderRK 7458.1 ms ✓ OrdinaryDiffEqFeagin 8943.3 ms ✓ OrdinaryDiffEqSSPRK 7848.9 ms ✓ OrdinaryDiffEqRKN 7642.9 ms ✓ OrdinaryDiffEqHighOrderRK 6675.3 ms ✓ OrdinaryDiffEqExplicitRK 15018.2 ms ✓ OrdinaryDiffEqTsit5 9400.8 ms ✓ OrdinaryDiffEqLinear 6938.5 ms ✓ OrdinaryDiffEqPRK 9982.8 ms ✓ OrdinaryDiffEqLowStorageRK 16095.8 ms ✓ OrdinaryDiffEqDifferentiation 4741.5 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 11329.6 ms ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 7434.3 ms ✓ OrdinaryDiffEqAdamsBashforthMoulton 6130.3 ms ✓ OrdinaryDiffEqNordsieck 7684.1 ms ✓ OrdinaryDiffEqDifferentiation → OrdinaryDiffEqDifferentiationSparseArraysExt 33675.9 ms ✓ NonlinearSolve 15966.4 ms ✓ OrdinaryDiffEqExtrapolation 45661.4 ms ✓ OrdinaryDiffEqRosenbrock 16862.8 ms ✓ OrdinaryDiffEqExponentialRK 16699.0 ms ✓ OrdinaryDiffEqNonlinearSolve 54155.1 ms ✓ OrdinaryDiffEqFIRK 14948.3 ms ✓ OrdinaryDiffEqIMEXMultistep 17282.5 ms ✓ OrdinaryDiffEqStabilizedIRK 16527.0 ms ✓ OrdinaryDiffEqPDIRK 17820.2 ms ✓ OrdinaryDiffEqSDIRK 34124.2 ms ✓ OrdinaryDiffEqBDF 72629.9 ms ✓ OrdinaryDiffEqDefault 22159.1 ms ✓ OrdinaryDiffEq 99 dependencies successfully precompiled in 1135 seconds. 141 already precompiled. Precompiling packages... 4256.0 ms ✓ SciMLBase → SciMLBaseMLStyleExt 1 dependency successfully precompiled in 5 seconds. 54 already precompiled. Precompiling packages... 1246.1 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1 dependency successfully precompiled in 1 seconds. 18 already precompiled. Precompiling packages... 28187.8 ms ✓ CTFlows → CTFlowsODE 1 dependency successfully precompiled in 30 seconds. 255 already precompiled. Precompiling packages... 5372.3 ms ✓ UnitfulLatexify 5366.9 ms ✓ StatsBase ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 411 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_41662.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2382 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_41662.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2382 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007e8b1803eb30 Total snapshots: 377. Utilization: 0% ╎377 @Base/task.jl:1137 wait_forever() 376╎ 377 @Base/task.jl:1200 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_41662.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2382 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 27581941 (Pool: 27581233; Big: 708); GC: 26 [411] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/CTFlows/3WJgr/test/runtests.jl:7 _ZN4llvm5Value12setValueNameEPNS_14StringMapEntryIPS0_EE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm5Value11deleteValueEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm11Instruction15eraseFromParentEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_14SROA7runSROAERN4llvm8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm8SROAPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:791 operator() at /source/src/jitlayers.cpp:1510 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1471 [inlined] operator() at /source/src/jitlayers.cpp:1623 [inlined] addModule at /source/src/jitlayers.cpp:2080 jl_compile_codeinst_now at /source/src/jitlayers.cpp:682 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:873 jl_compile_method_internal at /source/src/gf.c:3535 _jl_invoke at /source/src/gf.c:3993 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2382 [inlined] jl_f_invokelatest at /source/src/builtins.c:883 profile_printing_listener at ./Base.jl:336 #start_profile_listener##0 at ./Base.jl:354 jfptr_YY.start_profile_listenerYY.YY.0_1480.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2382 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 22368258 (Pool: 22366961; Big: 1297); GC: 52 PkgEval terminated after 2737.55s: test duration exceeded the time limit