Package evaluation of TaijaInteroperability on Julia 1.13.0-DEV.1039 (6568124d5b*) started at 2025-08-26T11:49:56.333 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.54s ################################################################################ # Installation # Installing TaijaInteroperability... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8949ac52] + TaijaInteroperability v1.0.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [65ce6f38] + PackageExtensionCompat v1.0.2 [8949ac52] + TaijaInteroperability v1.0.2 Installation completed after 3.95s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: PyTorchModelExt Failed to precompile PyTorchModelExt [fd2607c3-329f-507f-9083-4486ea6badd9] to "/home/pkgeval/.julia/compiled/v1.13/PyTorchModelExt/jl_k1B20R" (ProcessExited(1)). CondaPkg Found dependencies: /home/pkgeval/.julia/packages/TaijaInteroperability/tpgxD/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/IOKTD/CondaPkg.toml CondaPkg Resolving changes + numpy + openssl + python + pytorch CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_jatavX/.CondaPkg ✔ Created /tmp/jl_jatavX/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_jatavX/.CondaPkg/pixi.toml │ [dependencies] │ numpy = "*" │ openssl = ">=3, <3.6" │ pytorch = "*" │ │ [dependencies.python] │ version = ">=3.9,<4" │ build = "*cp*" │ channel = "conda-forge" │ │ [project] │ name = ".CondaPkg" │ description = "automatically generated by CondaPkg.jl" │ platforms = ["linux-64"] │ channel-priority = "strict" └ channels = ["conda-forge", "pytorch"] CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_jatavX/.CondaPkg/pixi.toml ✔ The default environment has been installed. ERROR: LoadError: UndefVarError: `AbstractDifferentiableModel` not defined in `PyTorchModelExt` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/TaijaInteroperability/tpgxD/ext/PyTorchModelExt/models.jl:3 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:309 [3] top-level scope @ ~/.julia/packages/TaijaInteroperability/tpgxD/ext/PyTorchModelExt/PyTorchModelExt.jl:9 [4] include(mod::Module, _path::String) @ Base ./Base.jl:308 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3017 [6] top-level scope @ stdin:5 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2863 [9] include_string @ ./loading.jl:2873 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [11] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/TaijaInteroperability/tpgxD/ext/PyTorchModelExt/models.jl:3 in expression starting at /home/pkgeval/.julia/packages/TaijaInteroperability/tpgxD/ext/PyTorchModelExt/PyTorchModelExt.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 2313.94s ################################################################################ # Testing # Testing TaijaInteroperability Status `/tmp/jl_5J1wo9/Project.toml` [4c88cf16] Aqua v0.8.14 [992eb4ea] CondaPkg v0.2.30 [2f13d31b] CounterfactualExplanations v1.4.5 ⌅ [587475ba] Flux v0.14.25 [c52c1a26] LaplaceRedux v1.2.0 [65ce6f38] PackageExtensionCompat v1.0.2 [6099a3de] PythonCall v0.9.27 [9d524318] TaijaData v1.1.7 [8949ac52] TaijaInteroperability v1.0.2 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_5J1wo9/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors 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LibCURL_jll v8.15.0+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.8.12 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.66.0+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... WARNING: Method definition _dummy_backedge() in module Memoization at /home/pkgeval/.julia/packages/Memoization/ON3Za/src/Memoization.jl:49 overwritten at /home/pkgeval/.julia/packages/Memoization/ON3Za/src/Memoization.jl:65. CondaPkg Found dependencies: /home/pkgeval/.julia/packages/TaijaInteroperability/tpgxD/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/IOKTD/CondaPkg.toml CondaPkg Resolving changes + numpy + openssl + python + pytorch CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_5J1wo9/.CondaPkg ✔ Created /tmp/jl_5J1wo9/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_5J1wo9/.CondaPkg/pixi.toml │ [dependencies] │ numpy = "*" │ openssl = ">=3, <3.6" │ pytorch = "*" │ │ [dependencies.python] │ version = ">=3.9,<4" │ build = "*cp*" │ channel = "conda-forge" │ │ [project] │ name = ".CondaPkg" │ description = "automatically generated by CondaPkg.jl" │ platforms = ["linux-64"] │ channel-priority = "strict" └ channels = ["conda-forge", "pytorch"] CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_5J1wo9/.CondaPkg/pixi.toml ✔ The default environment has been installed. Precompiling packages... 4831.3 ms ✓ CategoricalArrays → CategoricalArraysStructTypesExt 1 dependency successfully precompiled in 5 seconds. 11 already precompiled. Precompiling packages... 8673.6 ms ✓ Colors 2293.8 ms ✓ Accessors → UnitfulExt 1498.3 ms ✓ Chemfiles_jll 6187.7 ms ✓ AtomsBase 31091.7 ms ✓ CSV 1509.1 ms ✓ ColorVectorSpace → SpecialFunctionsExt 5729.1 ms ✓ Pickle HTTP Waiting for background task / IO / timer. [pid 1492] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1139 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_74938.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_74938.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007a76bcc95690 Total snapshots: 419. Utilization: 0% ╎419 @Base/task.jl:1137 wait_forever() 418╎ 419 @Base/task.jl:1200 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_74938.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 25268961 (Pool: 25268384; Big: 577); GC: 29 [1139] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/TaijaInteroperability/tpgxD/test/runtests.jl:8 getindex at ./essentials.jl:967 [inlined] getindex at ./../usr/share/julia/Compiler/src/ssair/ir.jl:319 [inlined] process_node! at ./../usr/share/julia/Compiler/src/ssair/ir.jl:1460 iterate_compact at ./../usr/share/julia/Compiler/src/ssair/ir.jl:1949 iterate at ./../usr/share/julia/Compiler/src/ssair/ir.jl:1871 [inlined] compact! at ./../usr/share/julia/Compiler/src/ssair/ir.jl:2148 compact! at ./../usr/share/julia/Compiler/src/ssair/ir.jl:2146 [inlined] run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1035 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1048 [inlined] optimize at ./../usr/share/julia/Compiler/src/optimize.jl:1021 jfptr_optimize_86544.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 finish_nocycle at ./../usr/share/julia/Compiler/src/typeinfer.jl:232 jfptr_finish_nocycle_84337.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4528 const_prop_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:1348 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:898 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:868 [inlined] handle1 at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:178 infercalls at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:252 abstract_call_gf_by_type at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:338 abstract_call_known at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2796 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2903 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2896 [inlined] abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3056 abstract_eval_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3074 [inlined] abstract_eval_statement_expr at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3430 abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3857 [inlined] abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3814 [inlined] typeinf_local at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4363 jfptr_typeinf_local_86820.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4521 const_prop_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:1348 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:898 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:868 [inlined] handle1 at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:178 infercalls at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:252 abstract_call_gf_by_type at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:338 abstract_call_known at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2796 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2903 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2896 [inlined] abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3056 abstract_eval_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3074 [inlined] abstract_eval_statement_expr at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3430 abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3857 [inlined] abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3814 [inlined] typeinf_local at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4363 jfptr_typeinf_local_86820.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4521 const_prop_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:1348 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:898 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:868 [inlined] handle1 at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:178 infercalls at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:252 abstract_call_gf_by_type at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:338 abstract_call_known at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2796 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2903 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2896 [inlined] abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3056 abstract_eval_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3074 [inlined] abstract_eval_statement_expr at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3430 abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3857 [inlined] abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3814 [inlined] typeinf_local at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4363 jfptr_typeinf_local_86820.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4521 const_prop_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:1348 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:898 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:868 [inlined] handle1 at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:178 infercalls at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:252 abstract_call_gf_by_type at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:338 abstract_call_known at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2796 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2903 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2896 [inlined] abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3056 abstract_eval_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3074 [inlined] abstract_eval_statement_expr at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3430 abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3857 [inlined] abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3814 [inlined] typeinf_local at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4363 jfptr_typeinf_local_86820.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4521 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1385 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1568 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1577 jfptr_typeinf_ext_toplevel_85993.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] jl_type_infer at /source/src/gf.c:462 jl_compile_method_internal at /source/src/gf.c:3523 _jl_invoke at /source/src/gf.c:3993 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:896 ansi_write_ at ./strings/annotated_io.jl:216 [inlined] print at ./strings/annotated_io.jl:241 [inlined] print at ./strings/io.jl:46 println at ./strings/io.jl:77 [inlined] print_tree at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1249 tree at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1309 print_group at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:389 #print#5 at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:331 print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 [inlined] print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 [inlined] print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 _peek_report at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:94 unknown function (ip: 0x7d5bcef1163f) at (unknown file) _jl_invoke at /source/src/gf.c:4001 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] jl_f_invokelatest at /source/src/builtins.c:877 profile_printing_listener at ./Base.jl:336 #start_profile_listener##0 at ./Base.jl:354 jfptr_YY.start_profile_listenerYY.YY.0_3354.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 37652247 (Pool: 37651536; Big: 711); GC: 21 [pid 1492] waiting for IO to finish: PkgEval terminated after 2737.21s: test duration exceeded the time limit