Package evaluation of EcoSISTEM on Julia 1.13.0-DEV.1039 (6568124d5b*) started at 2025-08-27T04:59:35.552 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.73s ################################################################################ # Installation # Installing EcoSISTEM... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [ed2dc23b] + EcoSISTEM v0.2.6 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.17.0 [81770e7c] + ASCIIrasters v0.1.2 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [c9ce4bd3] + ArchGDAL v0.10.10 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.19.0 [15f4f7f2] + AutoHashEquals v2.2.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.7 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [49dc2e85] + Calculus v0.5.2 ⌅ [324d7699] + CategoricalArrays v0.10.8 ⌅ [8be319e6] + Chain v0.5.0 [d360d2e6] + ChainRulesCore v1.26.0 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.0.3 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.1 ⌅ [1313f7d8] + DataFramesMeta v0.14.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [e7dc6d0d] + DataValues v0.4.13 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.7 [3c3547ce] + DiskArrays v0.4.15 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [d3d5718d] + Diversity v0.5.15 [ffbed154] + DocStringExtensions v0.9.5 [a58aae7d] + EcoBase v0.1.7 [ed2dc23b] + EcoSISTEM v0.2.6 [4e289a0a] + EnumX v1.0.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [411431e0] + Extents v0.1.6 [becb17da] + Feather v0.5.10 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.28.1 [53c48c17] + FixedPointNumbers v0.8.5 [53afe959] + FlatBuffers v0.6.2 [f6369f11] + ForwardDiff v1.0.1 [add2ef01] + GDAL v1.11.0 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.5.0 [86223c79] + Graphs v1.13.1 [19dc6840] + HCubature v1.7.0 [cd3eb016] + HTTP v1.10.17 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [a09fc81d] + ImageCore v0.10.5 [6deec6e2] + IndexedTables v1.0.1 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.4 ⌅ [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.11 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [1c8ee90f] + IterableTables v1.0.0 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v0.21.4 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 [d3d80556] + LineSearches v7.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [dbb5928d] + MappedArrays v0.4.2 [739be429] + MbedTLS v1.1.9 [442fdcdd] + Measures v0.3.2 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [30363a11] + NetCDF v0.12.2 [6fe1bfb0] + OffsetArrays v1.17.0 [a15396b6] + OnlineStats v1.7.1 [925886fa] + OnlineStatsBase v1.7.1 [4d8831e6] + OpenSSL v1.5.0 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [5432bcbf] + PaddedViews v0.5.12 [d96e819e] + Parameters v0.12.3 [fae87a5f] + ParserCombinator v2.2.1 [69de0a69] + Parsers v2.8.3 [aea672f4] + Phylo v0.5.4 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.5.0 ⌅ [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [9ae346a0] + RandomBooleanMatrices v0.1.2 [e6cf234a] + RandomNumbers v1.6.0 [b3c3ace0] + RangeArrays v0.3.2 [3cb90ccd] + RasterDataSources v0.7.0 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [7e506255] + ScopedValues v1.5.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [348f2d5d] + SpatialEcology v0.9.16 [276daf66] + SpecialFunctions v2.5.1 [cae243ae] + StackViews v0.1.2 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [892a3eda] + StringManipulation v0.4.1 ⌅ [09ab397b] + StructArrays v0.4.2 [3783bdb8] + TableTraits v1.0.1 [382cd787] + TableTraitsUtils v1.0.2 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [0796e94c] + Tokenize v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.24.0 [ea10d353] + WeakRefStrings v1.4.2 [efce3f68] + WoodburyMatrices v1.0.0 [a5390f91] + ZipFile v0.10.1 [8ce61222] + Arrow_jll v19.0.1+0 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [2e619515] + Expat_jll v2.7.1+0 [a7073274] + GDAL_jll v303.1100.300+0 [d604d12d] + GEOS_jll v3.13.1+1 [59f7168a] + Giflib_jll v5.2.3+0 [818ab7a1] + HDF4_jll v4.3.2+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [a51ab1cf] + ICU_jll v76.2.0+0 [aacddb02] + JpegTurbo_jll v3.1.2+0 [b39eb1a6] + Kerberos_krb5_jll v1.21.3+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [08be9ffa] + LibPQ_jll v16.8.0+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [89763e89] + Libtiff_jll v4.7.1+0 [d3a379c0] + LittleCMS_jll v2.17.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [c8ffd9c3] + MbedTLS_jll v2.28.6+2 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [7243133f] + NetCDF_jll v401.900.300+0 [643b3616] + OpenJpeg_jll v2.5.4+0 [fe0851c0] + OpenMPI_jll v5.0.8+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [58948b4f] + PROJ_jll v902.600.200+0 [784f63db] + Qhull_jll v10008.0.1004+0 [f50d1b31] + Rmath_jll v0.5.1+0 [76ed43ae] + SQLite_jll v3.48.0+0 [e0b8ae26] + Thrift_jll v0.21.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.6+1 [ffd25f8a] + XZ_jll v5.8.1+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [28df3c45] + boost_jll v1.87.0+0 [4611771a] + brotli_jll v1.1.1+0 [477f73a3] + libaec_jll v1.1.4+0 [06c338fa] + libgeotiff_jll v100.702.400+0 [b53b4c65] + libpng_jll v1.6.50+0 [c5f90fcd] + libwebp_jll v1.6.0+0 [337d8026] + libzip_jll v1.11.3+0 [888e69b1] + muparser_jll v2.3.5+0 [fe1e1685] + snappy_jll v1.2.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.8.12 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.66.0+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 12.01s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:76 Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: SpatialEcology Failed to precompile SpatialEcology [348f2d5d-71a3-5ad4-b565-8af070f99681] to "/home/pkgeval/.julia/compiled/v1.13/SpatialEcology/jl_ZLzEs7" (ProcessExited(1)). WARNING: Imported binding DataFrames.aggregate was undeclared at import time during import to SpatialEcology. ERROR: LoadError: invalid method definition in SpatialEcology: exported function DataFrames.aggregate does not exist Stacktrace: [1] top-level scope @ ~/.julia/packages/SpatialEcology/2IBpN/src/Operations.jl:4 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:309 [3] top-level scope @ ~/.julia/packages/SpatialEcology/2IBpN/src/SpatialEcology.jl:53 [4] include(mod::Module, _path::String) @ Base ./Base.jl:308 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3017 [6] top-level scope @ stdin:5 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2863 [9] include_string @ ./loading.jl:2873 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [11] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/SpatialEcology/2IBpN/src/Operations.jl:4 in expression starting at /home/pkgeval/.julia/packages/SpatialEcology/2IBpN/src/SpatialEcology.jl:2 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 768.56s ################################################################################ # Testing # Testing EcoSISTEM Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_fCkpga/Project.toml` [9ced6f0a] + DataPipeline v0.53.2 [ed2dc23b] + EcoSISTEM v0.2.6 [d7ba0133] + Git v1.5.0 ⌅ [98e50ef6] + JuliaFormatter v1.0.62 [da04e1cc] + MPI v0.20.23 ⌅ [30363a11] ↓ NetCDF v0.12.2 ⇒ v0.11.8 [91a5bcdd] + Plots v1.40.19 [58378933] + ResearchSoftwareMetadata v0.1.5 Updating `/tmp/jl_fCkpga/Manifest.toml` [00ebfdb7] + CSTParser v3.4.3 [336ed68f] + CSV v0.10.15 [35d6a980] + ColorSchemes v3.30.0 ⌅ [a80b9123] + CommonMark v0.8.16 [d38c429a] + Contour v0.6.3 [a10d1c49] + DBInterface v2.6.1 [9ced6f0a] + DataPipeline v0.53.2 ⌅ [3c3547ce] ↓ DiskArrays v0.4.15 ⇒ v0.3.23 [ed2dc23b] + EcoSISTEM v0.2.6 [c87230d0] + FFMPEG v0.4.4 [01fcc997] + FTPClient v1.2.1 [48062228] + FilePathsBase v0.9.24 [1fa38f19] + Format v1.3.7 ⌃ [add2ef01] ↓ GDAL v1.11.0 ⇒ v1.10.0 [28b8d3ca] + GR v0.73.17 [d7ba0133] + Git v1.5.0 [c27321d9] + Glob v1.3.1 [42e2da0e] + Grisu v1.0.2 ⌅ [f67ccb44] + HDF5 v0.16.16 [1019f520] + JLFzf v0.1.11 ⌅ [98e50ef6] + JuliaFormatter v1.0.62 [23fbe1c1] + Latexify v0.16.9 [da04e1cc] + MPI v0.20.23 [299715c1] + MarchingCubes v0.1.11 ⌅ [30363a11] ↓ NetCDF v0.12.2 ⇒ v0.11.8 [eebad327] + PkgVersion v0.3.3 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.3 [91a5bcdd] + Plots v1.40.19 [01d81517] + RecipesPipeline v0.6.12 [05181044] + RelocatableFolders v1.0.1 [58378933] + ResearchSoftwareMetadata v0.1.5 [0aa819cd] + SQLite v1.6.1 [6c6a2e73] + Scratch v1.3.0 [992d4aef] + Showoff v1.0.3 [860ef19b] + StableRNGs v1.0.3 [69024149] + StringEncodings v0.3.7 [30578b45] + URIParser v0.4.1 [1cfade01] + UnicodeFun v0.4.1 [b8865327] + UnicodePlots v3.8.1 [45397f5d] + UnitfulLatexify v1.7.0 [41fe7b60] + Unzip v0.2.0 [76eceee3] + WorkerUtilities v1.6.1 [ddb6d928] + YAML v0.4.14 ⌅ [8ce61222] ↓ Arrow_jll v19.0.1+0 ⇒ v18.1.1+0 [83423d85] + Cairo_jll v1.18.5+0 [ee1fde0b] + Dbus_jll v1.16.2+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [b22a6f82] + FFMPEG_jll v7.1.1+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 ⌅ [a7073274] ↓ GDAL_jll v303.1100.300+0 ⇒ v302.1000.100+0 [0656b61e] + GLFW_jll v3.4.0+2 [d2c73de3] + GR_jll v0.73.17+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.51.0+0 [7746bdde] + Glib_jll v2.84.3+0 [3b182d85] + Graphite2_jll v1.3.15+0 [818ab7a1] - HDF4_jll v4.3.2+0 ⌅ [0234f1f7] ↓ HDF5_jll v1.14.6+0 ⇒ v1.14.3+3 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [c1c5ebd0] + LAME_jll v3.100.3+0 [dd4b983a] + LZO_jll v2.10.3+0 [e9f186c6] + Libffi_jll v3.4.7+0 [4b2f31a3] + Libmount_jll v2.41.1+0 [38a345b3] + Libuuid_jll v2.41.1+0 ⌅ [7243133f] ↓ NetCDF_jll v401.900.300+0 ⇒ v400.902.211+1 [e7412a2a] + Ogg_jll v1.3.6+0 ⌅ [fe0851c0] ↓ OpenMPI_jll v5.0.8+0 ⇒ v4.1.8+1 [9bd350c2] + OpenSSH_jll v10.0.1+0 [91d4177d] + Opus_jll v1.5.2+0 [36c8627f] + Pango_jll v1.56.3+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 ⌅ [784f63db] ↓ Qhull_jll v10008.0.1004+0 ⇒ v8.0.1004+0 [c0090381] + Qt6Base_jll v6.8.2+1 [629bc702] + Qt6Declarative_jll v6.8.2+1 [ce943373] + Qt6ShaderTools_jll v6.8.2+1 [e99dba38] + Qt6Wayland_jll v6.8.2+1 ⌃ [e0b8ae26] ↓ Thrift_jll v0.21.1+0 ⇒ v0.21.0+0 [a44049a8] + Vulkan_Loader_jll v1.3.243+0 [a2964d1f] + Wayland_jll v1.24.0+0 [f67eecfb] + Xorg_libICE_jll v1.1.2+0 [c834827a] + Xorg_libSM_jll v1.2.6+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.1+0 [a51aa0fd] + Xorg_libXi_jll v1.8.3+0 [d1454406] + Xorg_libXinerama_jll v1.1.6+0 [ec84b674] + Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [cc61e674] + Xorg_libxkbfile_jll v1.1.3+0 [e920d4aa] + Xorg_xcb_util_cursor_jll v0.1.5+0 [12413925] + Xorg_xcb_util_image_jll v0.4.1+0 [2def613f] + Xorg_xcb_util_jll v0.4.1+0 [975044d2] + Xorg_xcb_util_keysyms_jll v0.4.1+0 [0d47668e] + Xorg_xcb_util_renderutil_jll v0.3.10+0 [c22f9ab0] + Xorg_xcb_util_wm_jll v0.4.2+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0 ⌅ [28df3c45] ↓ boost_jll v1.87.0+0 ⇒ v1.79.0+3 [35ca27e7] + eudev_jll v3.2.14+0 [214eeab7] + fzf_jll v0.61.1+0 [a4ae2306] + libaom_jll v3.12.1+0 [0ac62f75] + libass_jll v0.17.4+0 [1183f4f0] + libdecor_jll v0.2.2+0 [2db6ffa8] + libevdev_jll v1.13.4+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [36db933b] + libinput_jll v1.28.1+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [009596ad] + mtdev_jll v1.1.7+0 [888e69b1] - muparser_jll v2.3.5+0 [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [d8fb68d0] + xkbcommon_jll v1.9.2+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_fCkpga/Project.toml` [c9ce4bd3] ArchGDAL v0.10.10 [39de3d68] AxisArrays v0.4.7 [49dc2e85] Calculus v0.5.2 [a93c6f00] DataFrames v1.7.1 [9ced6f0a] DataPipeline v0.53.2 [31c24e10] Distributions v0.25.120 [d3d5718d] Diversity v0.5.15 [a58aae7d] EcoBase v0.1.7 [ed2dc23b] EcoSISTEM v0.2.6 [becb17da] Feather v0.5.10 [d7ba0133] Git v1.5.0 [19dc6840] HCubature v1.7.0 [6deec6e2] IndexedTables v1.0.1 ⌅ [a98d9a8b] Interpolations v0.15.1 ⌅ [033835bb] JLD2 v0.5.15 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [da04e1cc] MPI v0.20.23 [442fdcdd] Measures v0.3.2 [e1d29d7a] Missings v1.2.0 ⌅ [30363a11] NetCDF v0.11.8 [a15396b6] OnlineStats v1.7.1 [429524aa] Optim v1.13.2 [aea672f4] Phylo v0.5.4 [91a5bcdd] Plots v1.40.19 [3cb90ccd] RasterDataSources v0.7.0 [3cdcf5f2] RecipesBase v1.3.4 [58378933] ResearchSoftwareMetadata v0.1.5 [348f2d5d] SpatialEcology v0.9.16 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.6 [1986cc42] Unitful v1.24.0 [ade2ca70] Dates v1.11.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [3f19e933] p7zip_jll v17.6.0+0 Status `/tmp/jl_fCkpga/Manifest.toml` [47edcb42] ADTypes v1.17.0 [81770e7c] ASCIIrasters v0.1.2 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [c9ce4bd3] ArchGDAL v0.10.10 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.19.0 [15f4f7f2] AutoHashEquals v2.2.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 [00ebfdb7] CSTParser v3.4.3 [336ed68f] CSV v0.10.15 [49dc2e85] Calculus v0.5.2 ⌅ [324d7699] CategoricalArrays v0.10.8 ⌅ [8be319e6] Chain v0.5.0 [d360d2e6] ChainRulesCore v1.26.0 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.30.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.0.3 ⌅ [a80b9123] CommonMark v0.8.16 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [a8cc5b0e] Crayons v4.1.1 [a10d1c49] DBInterface v2.6.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.1 ⌅ [1313f7d8] DataFramesMeta v0.14.1 [9ced6f0a] DataPipeline v0.53.2 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [e7dc6d0d] DataValues v0.4.13 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.7 ⌅ [3c3547ce] DiskArrays v0.3.23 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [d3d5718d] Diversity v0.5.15 [ffbed154] DocStringExtensions v0.9.5 [a58aae7d] EcoBase v0.1.7 [ed2dc23b] EcoSISTEM v0.2.6 [4e289a0a] EnumX v1.0.5 [460bff9d] ExceptionUnwrapping v0.1.11 [411431e0] Extents v0.1.6 [c87230d0] FFMPEG v0.4.4 [01fcc997] FTPClient v1.2.1 [becb17da] Feather v0.5.10 [5789e2e9] FileIO v1.17.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.28.1 [53c48c17] FixedPointNumbers v0.8.5 [53afe959] FlatBuffers v0.6.2 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.0.1 ⌃ [add2ef01] GDAL v1.10.0 [28b8d3ca] GR v0.73.17 [68eda718] GeoFormatTypes v0.4.4 [cf35fbd7] GeoInterface v1.5.0 [d7ba0133] Git v1.5.0 [c27321d9] Glob v1.3.1 [86223c79] Graphs v1.13.1 [42e2da0e] Grisu v1.0.2 [19dc6840] HCubature v1.7.0 ⌅ [f67ccb44] HDF5 v0.16.16 [cd3eb016] HTTP v1.10.17 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [a09fc81d] ImageCore v0.10.5 [6deec6e2] IndexedTables v1.0.1 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.4 ⌅ [a98d9a8b] Interpolations v0.15.1 [8197267c] IntervalSets v0.7.11 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [1c8ee90f] IterableTables v1.0.0 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] JLD2 v0.5.15 [1019f520] JLFzf v0.1.11 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [8ac3fa9e] LRUCache v1.6.2 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.9 [d3d80556] LineSearches v7.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [da04e1cc] MPI v0.20.23 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [dbb5928d] MappedArrays v0.4.2 [299715c1] MarchingCubes v0.1.11 [739be429] MbedTLS v1.1.9 [442fdcdd] Measures v0.3.2 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 ⌅ [30363a11] NetCDF v0.11.8 [6fe1bfb0] OffsetArrays v1.17.0 [a15396b6] OnlineStats v1.7.1 [925886fa] OnlineStatsBase v1.7.1 [4d8831e6] OpenSSL v1.5.0 [429524aa] Optim v1.13.2 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [5432bcbf] PaddedViews v0.5.12 [d96e819e] Parameters v0.12.3 [fae87a5f] ParserCombinator v2.2.1 [69de0a69] Parsers v2.8.3 [aea672f4] Phylo v0.5.4 [eebad327] PkgVersion v0.3.3 [ccf2f8ad] PlotThemes v3.3.0 [995b91a9] PlotUtils v1.4.3 [91a5bcdd] Plots v1.40.19 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.5.0 ⌅ [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [9ae346a0] RandomBooleanMatrices v0.1.2 [e6cf234a] RandomNumbers v1.6.0 [b3c3ace0] RangeArrays v0.3.2 [3cb90ccd] RasterDataSources v0.7.0 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 [01d81517] RecipesPipeline v0.6.12 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [58378933] ResearchSoftwareMetadata v0.1.5 [79098fc4] Rmath v0.8.0 [0aa819cd] SQLite v1.6.1 [7e506255] ScopedValues v1.5.0 [6c6a2e73] Scratch 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 10722.7 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 14 seconds. 49 already precompiled. [ Info: Potentially missing tests: - Cache.jl - DiversitySet.jl - EcoSISTEM.jl - Landscape.jl - MPIEcosystem.jl - MPIGenerate.jl - MPILandscape.jl - ClimatePref.jl - ExtractClimate.jl - PhyloModels.jl [ Info: Potentially missing extension tests: - EcoSISTEMERAExt.jl [ Info: Running tests for files: = AbioticEnv.jl = AdditionalDiversity.jl = ClimateTypes.jl = DataCleaning.jl = Demographics.jl = Dist.jl = Ecosystem.jl = Energy.jl = Generate.jl = HabitatUpdate.jl = Habitats.jl = Helper.jl = Movement.jl = Phylo.jl = ReadData.jl = Scenarios.jl = SpeciesList.jl = TraitRelationship.jl = Traitfuns.jl = Traits.jl = Units.jl [ Info: Running tests... * Testing AbioticEnv.jl ... Precompiling packages... Info Given RasterDataSources was explicitly requested, output will be shown live  ┌ Warning: Replacing docs for `RasterDataSources.getraster :: Union{}` in module `RasterDataSources` └ @ Base.Docs docs/Docs.jl:253 10603.6 ms ✓ RasterDataSources 1 dependency successfully precompiled in 11 seconds. 38 already precompiled. 1 dependency had output during precompilation: ┌ RasterDataSources │ [Output was shown above] └ [ Info: Starting download for https://geodata.ucdavis.edu/climate/worldclim/2_1/base/wc2.1_10m_bio.zip ┌ Info: Downloading │ source = "https://geodata.ucdavis.edu/climate/worldclim/2_1/base/wc2.1_10m_bio.zip" │ dest = "assets/WorldClim/BioClim/zips/wc2.1_10m_bio.zip" │ progress = 0.3832 │ time_taken = "1.04 s" │ time_remaining = "1.67 s" │ average_speed = "17.593 MiB/s" │ downloaded = "18.227 MiB" │ remaining = "29.333 MiB" └ total = "47.559 MiB" ┌ Info: Downloading │ source = "https://geodata.ucdavis.edu/climate/worldclim/2_1/base/wc2.1_10m_bio.zip" │ dest = "assets/WorldClim/BioClim/zips/wc2.1_10m_bio.zip" │ progress = 0.9917 │ time_taken = "2.1 s" │ time_remaining = "0.02 s" │ average_speed = "22.502 MiB/s" │ downloaded = "47.165 MiB" │ remaining = "403.810 KiB" └ total = "47.559 MiB" ┌ Info: Downloading │ source = "https://geodata.ucdavis.edu/climate/worldclim/2_1/base/wc2.1_10m_bio.zip" │ dest = "assets/WorldClim/BioClim/zips/wc2.1_10m_bio.zip" │ progress = 1.0 │ time_taken = "2.1 s" │ time_remaining = "0.0 s" │ average_speed = "22.647 MiB/s" │ downloaded = "47.559 MiB" │ remaining = "0 bytes" └ total = "47.559 MiB" [ Info: Starting download for https://geodata.ucdavis.edu/climate/worldclim/2_1/base/wc2.1_10m_wind.zip ┌ Info: Downloading │ source = "https://geodata.ucdavis.edu/climate/worldclim/2_1/base/wc2.1_10m_wind.zip" │ dest = "assets/WorldClim/Climate/zips/wc2.1_10m_wind.zip" │ progress = 1.0 │ time_taken = "0.81 s" │ time_remaining = "0.0 s" │ average_speed = "32.958 MiB/s" │ downloaded = "26.564 MiB" │ remaining = "0 bytes" └ total = "26.564 MiB" [ Info: Starting download for https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_1.tif ┌ Info: Downloading │ source = "https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_1.tif" │ dest = "assets/EarthEnv/LandCover/without_DISCover/Consensus_reduced_class_1.tif" │ progress = 1.0 │ time_taken = "0.84 s" │ time_remaining = "0.0 s" │ average_speed = "60.451 MiB/s" │ downloaded = "51.081 MiB" │ remaining = "0 bytes" └ total = "51.081 MiB" [ Info: Starting download for https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_2.tif ┌ Info: Downloading │ source = "https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_2.tif" │ dest = "assets/EarthEnv/LandCover/without_DISCover/Consensus_reduced_class_2.tif" │ progress = 1.0 │ time_taken = "0.64 s" │ time_remaining = "0.0 s" │ average_speed = "43.420 MiB/s" │ downloaded = "27.876 MiB" │ remaining = "0 bytes" └ total = "27.876 MiB" [ Info: Starting download for https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_3.tif ┌ Info: Downloading │ source = "https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_3.tif" │ dest = "assets/EarthEnv/LandCover/without_DISCover/Consensus_reduced_class_3.tif" │ progress = 1.0 │ time_taken = "0.17 s" │ time_remaining = "0.0 s" │ average_speed = "251.666 MiB/s" │ downloaded = "42.280 MiB" │ remaining = "0 bytes" └ total = "42.280 MiB" [ Info: Starting download for https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_4.tif ┌ Info: Downloading │ source = "https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_4.tif" │ dest = "assets/EarthEnv/LandCover/without_DISCover/Consensus_reduced_class_4.tif" │ progress = 0.5137 │ time_taken = "1.0 s" │ time_remaining = "0.95 s" │ average_speed = "51.427 MiB/s" │ downloaded = "51.479 MiB" │ remaining = "48.739 MiB" └ total = "100.218 MiB" ┌ Info: Downloading │ source = "https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_4.tif" │ dest = "assets/EarthEnv/LandCover/without_DISCover/Consensus_reduced_class_4.tif" │ progress = 1.0 │ time_taken = "1.58 s" │ time_remaining = "0.0 s" │ average_speed = "63.429 MiB/s" │ downloaded = "100.218 MiB" │ remaining = "0 bytes" └ total = "100.218 MiB" [ Info: Starting download for https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_5.tif ┌ Info: Downloading │ source = "https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_5.tif" │ dest = "assets/EarthEnv/LandCover/without_DISCover/Consensus_reduced_class_5.tif" │ progress = 1.0 │ time_taken = "0.27 s" │ time_remaining = "0.0 s" │ average_speed = "285.525 MiB/s" │ downloaded = "77.092 MiB" │ remaining = "0 bytes" └ total = "77.092 MiB" [ Info: Starting download for https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_6.tif ┌ Info: Downloading │ source = "https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_6.tif" │ dest = "assets/EarthEnv/LandCover/without_DISCover/Consensus_reduced_class_6.tif" │ progress = 0.7567 │ time_taken = "1.01 s" │ time_remaining = "0.32 s" │ average_speed = "53.587 MiB/s" │ downloaded = "54.016 MiB" │ remaining = "17.370 MiB" └ total = "71.385 MiB" ┌ Info: Downloading │ source = "https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_6.tif" │ dest = "assets/EarthEnv/LandCover/without_DISCover/Consensus_reduced_class_6.tif" │ progress = 1.0 │ time_taken = "1.13 s" │ time_remaining = "0.0 s" │ average_speed = "63.117 MiB/s" │ downloaded = "71.385 MiB" │ remaining = "0 bytes" └ total = "71.385 MiB" [ Info: Starting download for https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_7.tif ┌ Info: Downloading │ source = "https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_7.tif" │ dest = "assets/EarthEnv/LandCover/without_DISCover/Consensus_reduced_class_7.tif" │ progress = 1.0 │ time_taken = "0.27 s" │ time_remaining = "0.0 s" │ average_speed = "286.727 MiB/s" │ downloaded = "78.276 MiB" │ remaining = "0 bytes" └ total = "78.276 MiB" [ Info: Starting download for https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_8.tif ┌ Info: Downloading │ source = "https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_8.tif" │ dest = "assets/EarthEnv/LandCover/without_DISCover/Consensus_reduced_class_8.tif" │ progress = 1.0 │ time_taken = "0.08 s" │ time_remaining = "0.0 s" │ average_speed = "265.266 MiB/s" │ downloaded = "20.691 MiB" │ remaining = "0 bytes" └ total = "20.691 MiB" [ Info: Starting download for https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_9.tif ┌ Info: Downloading │ source = "https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_9.tif" │ dest = "assets/EarthEnv/LandCover/without_DISCover/Consensus_reduced_class_9.tif" │ progress = 1.0 │ time_taken = "0.14 s" │ time_remaining = "0.0 s" │ average_speed = "70.754 MiB/s" │ downloaded = "9.693 MiB" │ remaining = "0 bytes" └ total = "9.693 MiB" [ Info: Starting download for https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_10.tif ┌ Info: Downloading │ source = "https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_10.tif" │ dest = "assets/EarthEnv/LandCover/without_DISCover/Consensus_reduced_class_10.tif" │ progress = 1.0 │ time_taken = "0.04 s" │ time_remaining = "0.0 s" │ average_speed = "298.769 MiB/s" │ downloaded = "12.847 MiB" │ remaining = "0 bytes" └ total = "12.847 MiB" [ Info: Starting download for https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_11.tif ┌ Info: Downloading │ source = "https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_11.tif" │ dest = "assets/EarthEnv/LandCover/without_DISCover/Consensus_reduced_class_11.tif" │ progress = 1.0 │ time_taken = "0.23 s" │ time_remaining = "0.0 s" │ average_speed = "285.391 MiB/s" │ downloaded = "66.781 MiB" │ remaining = "0 bytes" └ total = "66.781 MiB" [ Info: Starting download for https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_12.tif ┌ Info: Downloading │ source = "https://data.earthenv.org/consensus_landcover/without_DISCover/Consensus_reduced_class_12.tif" │ dest = "assets/EarthEnv/LandCover/without_DISCover/Consensus_reduced_class_12.tif" │ progress = 1.0 │ time_taken = "0.1 s" │ time_remaining = "0.0 s" │ average_speed = "302.790 MiB/s" │ downloaded = "29.371 MiB" │ remaining = "0 bytes" └ total = "29.371 MiB" GDAL Dataset (Driver: GTiff/GeoTIFF) File(s): assets/WorldClim/BioClim/wc2.1_10m_bio_1.tif Dataset (width x height): 2160 x 1080 (pixels) Number of raster bands: 1 [GA_ReadOnly] Band 1 (Gray): 2160 x 1080 (Float32) GDAL Dataset (Driver: GTiff/GeoTIFF) File(s): assets/EarthEnv/LandCover/without_DISCover/Consensus_reduced_class_1.tif Dataset (width x height): 43200 x 17520 (pixels) Number of raster bands: 1 [GA_ReadOnly] Band 1 (Gray): 43200 x 17520 (UInt8) * Testing AdditionalDiversity.jl ... * Testing ClimateTypes.jl ... * Testing DataCleaning.jl ... * Testing Demographics.jl ... * Testing Dist.jl ... * Testing Ecosystem.jl ... * Testing Energy.jl ... * Testing Generate.jl ... * Testing HabitatUpdate.jl ... * Testing Habitats.jl ... * Testing Helper.jl ... * Testing Movement.jl ... * Testing Phylo.jl ... * Testing ReadData.jl ... GDAL Dataset (Driver: GTiff/GeoTIFF) File(s): assets/WorldClim/BioClim/wc2.1_10m_bio_1.tif Dataset (width x height): 2160 x 1080 (pixels) Number of raster bands: 1 [GA_ReadOnly] Band 1 (Gray): 2160 x 1080 (Float32) GDAL Dataset (Driver: GTiff/GeoTIFF) File(s): assets/WorldClim/Climate/wind/wc2.1_10m_wind_01.tif Dataset (width x height): 2160 x 1080 (pixels) Number of raster bands: 1 [GA_ReadOnly] Band 1 (Gray): 2160 x 1080 (Float32) GDAL Dataset (Driver: GTiff/GeoTIFF) File(s): assets/WorldClim/BioClim/wc2.1_10m_bio_1.tif Dataset (width x height): 2160 x 1080 (pixels) Number of raster bands: 1 [GA_ReadOnly] Band 1 (Gray): 2160 x 1080 (Float32) GDAL Dataset (Driver: GTiff/GeoTIFF) File(s): assets/WorldClim/Climate/wind/wc2.1_10m_wind_01.tif Dataset (width x height): 2160 x 1080 (pixels) Number of raster bands: 1 [GA_ReadOnly] Band 1 (Gray): 2160 x 1080 (Float32) GDAL Dataset (Driver: GTiff/GeoTIFF) File(s): assets/WorldClim/BioClim/wc2.1_10m_bio_1.tif Dataset (width x height): 2160 x 1080 (pixels) Number of raster bands: 1 [GA_ReadOnly] Band 1 (Gray): 2160 x 1080 (Float32) GDAL Dataset (Driver: GTiff/GeoTIFF) File(s): assets/EarthEnv/LandCover/without_DISCover/Consensus_reduced_class_1.tif Dataset (width x height): 43200 x 17520 (pixels) Number of raster bands: 1 [GA_ReadOnly] Band 1 (Gray): 43200 x 17520 (UInt8) GDAL Dataset (Driver: GTiff/GeoTIFF) File(s): assets/WorldClim/BioClim/wc2.1_10m_bio_1.tif Dataset (width x height): 2160 x 1080 (pixels) Number of raster bands: 1 [GA_ReadOnly] Band 1 (Gray): 2160 x 1080 (Float32) GDAL Dataset (Driver: GTiff/GeoTIFF) File(s): assets/WorldClim/BioClim/wc2.1_10m_bio_1.tif Dataset (width x height): 2160 x 1080 (pixels) Number of raster bands: 1 [GA_ReadOnly] Band 1 (Gray): 2160 x 1080 (Float32) GDAL Dataset (Driver: GTiff/GeoTIFF) File(s): assets/WorldClim/BioClim/wc2.1_10m_bio_1.tif Dataset (width x height): 2160 x 1080 (pixels) Number of raster bands: 1 [GA_ReadOnly] Band 1 (Gray): 2160 x 1080 (Float32) GDAL Dataset (Driver: GTiff/GeoTIFF) File(s): assets/WorldClim/BioClim/wc2.1_10m_bio_1.tif Dataset (width x height): 2160 x 1080 (pixels) Number of raster bands: 1 [GA_ReadOnly] Band 1 (Gray): 2160 x 1080 (Float32) GDAL Dataset (Driver: GTiff/GeoTIFF) File(s): assets/WorldClim/BioClim/wc2.1_10m_bio_1.tif Dataset (width x height): 2160 x 1080 (pixels) Number of raster bands: 1 [GA_ReadOnly] Band 1 (Gray): 2160 x 1080 (Float32) GDAL Dataset (Driver: GTiff/GeoTIFF) File(s): assets/EarthEnv/LandCover/without_DISCover/Consensus_reduced_class_1.tif Dataset (width x height): 43200 x 17520 (pixels) Number of raster bands: 1 [GA_ReadOnly] Band 1 (Gray): 43200 x 17520 (UInt8) GDAL Dataset (Driver: GTiff/GeoTIFF) File(s): assets/WorldClim/BioClim/wc2.1_10m_bio_1.tif Dataset (width x height): 2160 x 1080 (pixels) Number of raster bands: 1 [GA_ReadOnly] Band 1 (Gray): 2160 x 1080 (Float32) GDAL Dataset (Driver: GTiff/GeoTIFF) File(s): assets/WorldClim/Climate/wind/wc2.1_10m_wind_01.tif Dataset (width x height): 2160 x 1080 (pixels) Number of raster bands: 1 [GA_ReadOnly] Band 1 (Gray): 2160 x 1080 (Float32) GDAL Dataset (Driver: GTiff/GeoTIFF) File(s): assets/WorldClim/Climate/wind/wc2.1_10m_wind_01.tif Dataset (width x height): 2160 x 1080 (pixels) Number of raster bands: 1 [GA_ReadOnly] Band 1 (Gray): 2160 x 1080 (Float32) * Testing Scenarios.jl ... * Testing SpeciesList.jl ... * Testing TraitRelationship.jl ... * Testing Traitfuns.jl ... * Testing Traits.jl ... * Testing Units.jl ... [ Info: Running tests for extensions: = EcoSISTEMDataPipelineExt.jl = EcoSISTEMMPIExt.jl = EcoSISTEMPlotsExt.jl [ Info: Running extension tests... * Testing EcoSISTEMDataPipelineExt.jl extension... Precompiling packages... 99799.7 ms ✓ UnicodePlots 4142.9 ms ✓ SQLite 9004.0 ms ✓ Latexify → DataFramesExt 24502.5 ms ✓ CSV 14277.1 ms ✓ HDF5 107378.2 ms ✓ Plots 9264.9 ms ✓ UnicodePlots → IntervalSetsExt 11752.0 ms ✓ UnicodePlots → UnitfulExt 20198.6 ms ✓ Plots → UnitfulExt 40464.6 ms ✓ DataPipeline 10 dependencies successfully precompiled in 345 seconds. 233 already precompiled. Precompiling packages... 20679.0 ms ✓ Plots → FileIOExt 1 dependency successfully precompiled in 23 seconds. 182 already precompiled. 7-Zip (a) [64] 17.05 : Copyright (c) 1999-2021 Igor Pavlov : 2017-08-28 p7zip Version 17.05 (locale=C.UTF-8,Utf16=on,HugeFiles=on,64 bits,128 CPUs AMD EPYC 7502 32-Core Processor (830F10),ASM,AES-NI) Scanning the drive for archives: 1 file, 49869449 bytes (48 MiB) Extracting archive: assets/WorldClim/BioClim/zips/wc2.1_10m_bio.zip -- Path = assets/WorldClim/BioClim/zips/wc2.1_10m_bio.zip Type = zip Physical Size = 49869449 Everything is Ok Files: 19 Size: 54141935 Compressed: 49869449 * Testing EcoSISTEMMPIExt.jl extension... 1 3.234101 seconds (737.40 k allocations: 40.209 MiB, 97.10% compilation time) [ Info: Total Memory: 32.0GB, threads: 4 Fatal error in internal_Init_thread: Other MPI error, error stack: internal_Init_thread(71)...........: MPI_Init_thread(argc=(nil), argv=(nil), required=2, provided=0x7ffe6b466cd0) failed MPII_Init_thread(257)..............: MPID_Init(65)......................: init_world(169)....................: channel initialization failed MPIDI_CH3_Init(84).................: MPID_nem_init(314).................: MPID_nem_tcp_init(175).............: MPID_nem_tcp_get_business_card(400): GetSockInterfaceAddr(373)..........: gethostbyname failed, EcoSISTEM-primary-xZvHtGre (errno 2) mpirun: Error During Test at /home/pkgeval/.julia/packages/EcoSISTEM/T0iUc/test/ext_EcoSISTEMMPIExt.jl:112 Test threw exception Expression: success(run(cmd())) failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/117d9048128625bb3418b0b4cca48739c5d28740/bin/mpiexec -n 1 /opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so --depwarn=yes --check-bounds=yes --pkgimages=existing -g1 --startup-file=no --startup-file=no /home/pkgeval/.julia/packages/EcoSISTEM/T0iUc/test/SmallMPItest.jl`,["RASTERDATASOURCES_PATH=assets", "CI=true", "UCX_MEMTYPE_CACHE=no", "OPENBLAS_NUM_THREADS=1", "XKB_CONFIG_ROOT=/home/pkgeval/.julia/artifacts/23d821271a00e164eb2b5c273985da44f9a831a1/share/X11/xkb", "OPENBLAS_MAIN_FREE=1", "LIBDECOR_PLUGIN_DIR=/home/pkgeval/.julia/artifacts/38e215c51e5c0f77bc7a8813ba4586632a8fc750/lib/libdecor/plugins-1", "JULIA_CPU_THREADS=1", "JULIA_LOAD_PATH=@:/tmp/jl_fCkpga", "FONTCONFIG_FILE=/home/pkgeval/.julia/artifacts/258f7271ca555a7634c0fe8b8508f69334673a89/etc/fonts/fonts.conf", "PYTHON=", "R_HOME=*", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "UCX_ERROR_SIGNALS=SIGILL,SIGBUS,SIGFPE", "JULIA_PKG_PRECOMPILE_AUTO=0", "FONTCONFIG_PATH=/home/pkgeval/.julia/artifacts/258f7271ca555a7634c0fe8b8508f69334673a89/etc/fonts", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/cca0c2dee0e2a3c254d43ce2b2fee025b65b9ff1/lib:/home/pkgeval/.julia/artifacts/117d9048128625bb3418b0b4cca48739c5d28740/lib:/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib", "JULIA_PKGEVAL=true", "HOME=/home/pkgeval", "JULIA_NUM_THREADS=4", "GRDIR=/home/pkgeval/.julia/artifacts/66ca7b28f1bbc22b343c23ceede5b1dfe67c1364", "PATH=/home/pkgeval/.julia/artifacts/cca0c2dee0e2a3c254d43ce2b2fee025b65b9ff1/bin:/home/pkgeval/.julia/artifacts/117d9048128625bb3418b0b4cca48739c5d28740/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin", "DISPLAY=:1", "PKGEVAL=true", "LANG=C.UTF-8"]), ProcessExited(15)) [15] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:517 [3] run @ ./process.jl:514 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:742 [inlined] [5] (::Main.ExtEcoSISTEMMPIExt.var"#7#8"{String})() @ Main.ExtEcoSISTEMMPIExt ~/.julia/packages/EcoSISTEM/T0iUc/test/ext_EcoSISTEMMPIExt.jl:112 [ Info: Total Memory: 32.0GB, threads: 2 [ Info: Total Memory: 32.0GB, threads: 2 Fatal error in internal_Init_thread: Other MPI error, error stack: internal_Init_thread(71)...........: MPI_Init_thread(argc=(nil), argv=(nil), required=2, provided=0x7ffee7348a00) failed MPII_Init_thread(257)..............: MPID_Init(65)......................: init_world(169)....................: channel initialization failed MPIDI_CH3_Init(84).................: MPID_nem_init(314).................: MPID_nem_tcp_init(175).............: MPID_nem_tcp_get_business_card(400): GetSockInterfaceAddr(373)..........: gethostbyname failed, EcoSISTEM-primary-xZvHtGre (errno 2) mpirun: Error During Test at /home/pkgeval/.julia/packages/EcoSISTEM/T0iUc/test/ext_EcoSISTEMMPIExt.jl:119 Test threw exception Expression: success(run(cmd())) failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/117d9048128625bb3418b0b4cca48739c5d28740/bin/mpiexec -n 2 /opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so --depwarn=yes --check-bounds=yes --pkgimages=existing -g1 --startup-file=no --startup-file=no /home/pkgeval/.julia/packages/EcoSISTEM/T0iUc/test/SmallMPItest.jl`,["RASTERDATASOURCES_PATH=assets", "CI=true", "UCX_MEMTYPE_CACHE=no", "OPENBLAS_NUM_THREADS=1", "XKB_CONFIG_ROOT=/home/pkgeval/.julia/artifacts/23d821271a00e164eb2b5c273985da44f9a831a1/share/X11/xkb", "OPENBLAS_MAIN_FREE=1", "LIBDECOR_PLUGIN_DIR=/home/pkgeval/.julia/artifacts/38e215c51e5c0f77bc7a8813ba4586632a8fc750/lib/libdecor/plugins-1", "JULIA_CPU_THREADS=1", "JULIA_LOAD_PATH=@:/tmp/jl_fCkpga", "FONTCONFIG_FILE=/home/pkgeval/.julia/artifacts/258f7271ca555a7634c0fe8b8508f69334673a89/etc/fonts/fonts.conf", "PYTHON=", "R_HOME=*", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "UCX_ERROR_SIGNALS=SIGILL,SIGBUS,SIGFPE", "JULIA_PKG_PRECOMPILE_AUTO=0", "FONTCONFIG_PATH=/home/pkgeval/.julia/artifacts/258f7271ca555a7634c0fe8b8508f69334673a89/etc/fonts", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/cca0c2dee0e2a3c254d43ce2b2fee025b65b9ff1/lib:/home/pkgeval/.julia/artifacts/117d9048128625bb3418b0b4cca48739c5d28740/lib:/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib", "JULIA_PKGEVAL=true", "HOME=/home/pkgeval", "JULIA_NUM_THREADS=2", "GRDIR=/home/pkgeval/.julia/artifacts/66ca7b28f1bbc22b343c23ceede5b1dfe67c1364", "PATH=/home/pkgeval/.julia/artifacts/cca0c2dee0e2a3c254d43ce2b2fee025b65b9ff1/bin:/home/pkgeval/.julia/artifacts/117d9048128625bb3418b0b4cca48739c5d28740/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin", "DISPLAY=:1", "PKGEVAL=true", "LANG=C.UTF-8"]), ProcessExited(15)) [15] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:517 [3] run @ ./process.jl:514 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:742 [inlined] [5] (::Main.ExtEcoSISTEMMPIExt.var"#10#11"{String})() @ Main.ExtEcoSISTEMMPIExt ~/.julia/packages/EcoSISTEM/T0iUc/test/ext_EcoSISTEMMPIExt.jl:119 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 448 running 1 of 1 signal (10): User defined signal 1 access at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__fs_work at /workspace/srcdir/libuv/src/unix/fs.c:1633 uv_fs_access at /workspace/srcdir/libuv/src/unix/fs.c:1720 jl_fs_access at /source/src/jl_uv.c:632 ispath at ./stat.jl:377 resolve_depot at ./loading.jl:3400 parse_cache_header at ./loading.jl:3527 sort_by at ./loading.jl:1208 _broadcast_getindex_evalf at ./broadcast.jl:701 [inlined] _broadcast_getindex at ./broadcast.jl:674 [inlined] _getindex at ./broadcast.jl:622 [inlined] getindex at ./broadcast.jl:618 [inlined] macro expansion at ./broadcast.jl:997 [inlined] macro expansion at ./simdloop.jl:77 [inlined] copyto! at ./broadcast.jl:996 [inlined] copyto! at ./broadcast.jl:949 [inlined] copy at ./broadcast.jl:921 [inlined] materialize at ./broadcast.jl:896 [inlined] find_all_in_cache_path at ./loading.jl:1228 #_require_search_from_serialized#898 at ./loading.jl:2059 _require_search_from_serialized at ./loading.jl:1999 jfptr__require_search_from_serialized_72976.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 __require_prelocked at ./loading.jl:2618 _require_prelocked at ./loading.jl:2484 macro expansion at ./loading.jl:2412 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2376 jfptr___require_29615.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:896 require at ./loading.jl:2352 [inlined] eval_import_path at ./module.jl:36 [inlined] eval_import_path_all at ./module.jl:60 _eval_using at ./module.jl:137 jfptr__eval_using_71972.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2863 _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 _include at ./loading.jl:2923 include at ./Base.jl:308 exec_options at ./client.jl:330 _start at ./client.jl:563 jfptr__start_44071.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x70b578aed249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 447 running 1 of 1 signal (10): User defined signal 1 egal_types at /source/src/builtins.c:174 egal_types at /source/src/builtins.c:185 egal_types at /source/src/builtins.c:185 ijl_types_equal at /source/src/subtype.c:2325 jl_specializations_get_linfo_ at /source/src/gf.c:237 jl_restore_system_image_from_stream_ at /source/src/staticdata.c:4213 jl_restore_package_image_from_stream at /source/src/staticdata.c:4421 jl_restore_incremental_from_buf at /source/src/staticdata.c:4490 ijl_restore_package_image_from_file at /source/src/staticdata.c:4557 #_include_from_serialized#879 at ./loading.jl:1271 _include_from_serialized at ./loading.jl:1247 [inlined] #_require_search_from_serialized#898 at ./loading.jl:2092 _require_search_from_serialized at ./loading.jl:1999 jfptr__require_search_from_serialized_72976.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 __require_prelocked at ./loading.jl:2618 _require_prelocked at ./loading.jl:2484 macro expansion at ./loading.jl:2412 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2376 jfptr___require_29615.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:896 require at ./loading.jl:2352 [inlined] eval_import_path at ./module.jl:36 [inlined] eval_import_path_all at ./module.jl:60 _eval_using at ./module.jl:137 jfptr__eval_using_71972.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2863 _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 _include at ./loading.jl:2923 include at ./Base.jl:308 exec_options at ./client.jl:330 _start at ./client.jl:563 jfptr__start_44071.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x720510a9f249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 446 running 1 of 1 signal (10): User defined signal 1 jl_specializations_get_linfo_ at /source/src/gf.c:237 jl_restore_system_image_from_stream_ at /source/src/staticdata.c:4169 jl_restore_package_image_from_stream at /source/src/staticdata.c:4421 jl_restore_incremental_from_buf at /source/src/staticdata.c:4490 ijl_restore_package_image_from_file at /source/src/staticdata.c:4557 #_include_from_serialized#879 at ./loading.jl:1271 _include_from_serialized at ./loading.jl:1247 [inlined] #_require_search_from_serialized#898 at ./loading.jl:2092 _require_search_from_serialized at ./loading.jl:1999 jfptr__require_search_from_serialized_72976.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 __require_prelocked at ./loading.jl:2618 _require_prelocked at ./loading.jl:2484 macro expansion at ./loading.jl:2412 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2376 jfptr___require_29615.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:896 require at ./loading.jl:2352 [inlined] eval_import_path at ./module.jl:36 [inlined] eval_import_path_all at ./module.jl:60 _eval_using at ./module.jl:137 jfptr__eval_using_71972.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2863 _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 _include at ./loading.jl:2923 include at ./Base.jl:308 exec_options at ./client.jl:330 _start at ./client.jl:563 jfptr__start_44071.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x74d243395249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 445 running 1 of 1 signal (10): User defined signal 1 ijl_subtype_env at /source/src/subtype.c:2248 intersect_var_ccheck_in_env at /source/src/subtype.c:3902 intersect_var at /source/src/subtype.c:2797 intersect at /source/src/subtype.c:4143 intersect_invariant at /source/src/subtype.c:3797 intersect at /source/src/subtype.c:4222 intersect_unionall_ at /source/src/subtype.c:3386 intersect_unionall at /source/src/subtype.c:3473 intersect at /source/src/subtype.c:4198 intersect_tuple at /source/src/subtype.c:3694 intersect at /source/src/subtype.c:4215 intersect_unionall_ at /source/src/subtype.c:3382 intersect_unionall at /source/src/subtype.c:3473 intersect at /source/src/subtype.c:4201 intersect_unionall_ at /source/src/subtype.c:3382 intersect_unionall at /source/src/subtype.c:3473 intersect at /source/src/subtype.c:4201 intersect_unionall_ at /source/src/subtype.c:3382 intersect_unionall at /source/src/subtype.c:3473 intersect at /source/src/subtype.c:4201 intersect_all at /source/src/subtype.c:4357 jl_type_intersection_env_s at /source/src/subtype.c:4605 jl_type_intersection2 at /source/src/gf.c:2127 _typename_invalidate_backedges at /source/src/gf.c:2357 jl_foreach_top_typename_for at /source/src/gf.c:874 [inlined] jl_method_table_activate at /source/src/gf.c:2969 jl_activate_methods at /source/src/staticdata_utils.c:947 [inlined] jl_restore_package_image_from_stream at /source/src/staticdata.c:4448 ijl_restore_incremental at /source/src/staticdata.c:4503 #_include_from_serialized#879 at ./loading.jl:1275 _include_from_serialized at ./loading.jl:1247 [inlined] #_require_search_from_serialized#898 at ./loading.jl:2092 _require_search_from_serialized at ./loading.jl:1999 jfptr__require_search_from_serialized_72976.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 __require_prelocked at ./loading.jl:2618 _require_prelocked at ./loading.jl:2484 macro expansion at ./loading.jl:2412 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2376 jfptr___require_29615.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:896 require at ./loading.jl:2352 [inlined] eval_import_path at ./module.jl:36 [inlined] eval_import_path_all at ./module.jl:60 _eval_using at ./module.jl:137 jfptr__eval_using_71972.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2863 _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 _include at ./loading.jl:2923 include at ./Base.jl:308 exec_options at ./client.jl:330 _start at ./client.jl:563 jfptr__start_44071.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x76851dfcd249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 353 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_74938.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1200 wait_forever at ./task.jl:1137 jfptr_wait_forever_74938.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== [448] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/EcoSISTEM/T0iUc/test/SmallMPItest.jl:4 egal_types at /source/src/builtins.c:182 [353] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/EcoSISTEM/T0iUc/test/ext_EcoSISTEMMPIExt.jl:102 [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 _ZN4llvm3ARM9parseArchENS_9StringRefE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) [445] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/EcoSISTEM/T0iUc/test/SmallMPItest.jl:4 ijl_types_equal at /source/src/subtype.c:2322 jl_specializations_get_linfo_ at /source/src/gf.c:237 jl_restore_system_image_from_stream_ at /source/src/staticdata.c:4169 jl_restore_package_image_from_stream at /source/src/staticdata.c:4421 ijl_restore_incremental at /source/src/staticdata.c:4503 #_include_from_serialized#879 at ./loading.jl:1275 _include_from_serialized at ./loading.jl:1247 [inlined] #_require_search_from_serialized#898 at ./loading.jl:2092 _require_search_from_serialized at ./loading.jl:1999 jfptr__require_search_from_serialized_72976.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 __require_prelocked at ./loading.jl:2618 _require_prelocked at ./loading.jl:2484 macro expansion at ./loading.jl:2412 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2376 jfptr___require_29615.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:896 require at ./loading.jl:2352 [inlined] eval_import_path at ./module.jl:36 [inlined] eval_import_path_all at ./module.jl:60 _eval_using at ./module.jl:137 jfptr__eval_using_71972.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2863 _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 _include at ./loading.jl:2923 include at ./Base.jl:308 ijl_types_equal at /source/src/subtype.c:2325 jl_specializations_get_linfo_ at /source/src/gf.c:237 exec_options at ./client.jl:330 _start at ./client.jl:563 jfptr__start_44071.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x76851dfcd249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 10458599 (Pool: 10458415; Big: 184); GC: 20 jl_restore_system_image_from_stream_ at /source/src/staticdata.c:4169 jl_restore_package_image_from_stream at /source/src/staticdata.c:4421 ijl_restore_incremental at /source/src/staticdata.c:4503 #_include_from_serialized#879 at ./loading.jl:1275 _include_from_serialized at ./loading.jl:1247 [inlined] #_require_search_from_serialized#898 at ./loading.jl:2092 _require_search_from_serialized at ./loading.jl:1999 jfptr__require_search_from_serialized_72976.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 __require_prelocked at ./loading.jl:2618 _require_prelocked at ./loading.jl:2484 macro expansion at ./loading.jl:2412 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2376 jfptr___require_29615.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:896 require at ./loading.jl:2352 [inlined] eval_import_path at ./module.jl:36 [inlined] eval_import_path_all at ./module.jl:60 _eval_using at ./module.jl:137 jfptr__eval_using_71972.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2863 _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 _include at ./loading.jl:2923 include at ./Base.jl:308 exec_options at ./client.jl:330 _start at ./client.jl:563 jfptr__start_44071.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x70b578aed249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 10458599 (Pool: 10458415; Big: 184); GC: 20 _ZL12parseSubArchN4llvm9StringRefE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6TripleC1ERKNS_5TwineE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15AllocationOrder6createEjRKNS_10VirtRegMapERKNS_17RegisterClassInfoEPKNS_13LiveRegMatrixE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm12verifyModuleERKNS_6ModuleEPNS_11raw_ostreamEPb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm8RAGreedy17selectOrSplitImplERKNS_12LiveIntervalERNS_15SmallVectorImplINS_8RegisterEEERNS_8SmallSetIS5_Lj16ESt4lessIS5_EEERNS_11SmallVectorISt4pairIPS2_NS_10MCRegisterEELj8EEEj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm8RAGreedy13selectOrSplitERKNS_12LiveIntervalERNS_15SmallVectorImplINS_8RegisterEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm12RegAllocBase16allocatePhysRegsEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm8RAGreedy20runOnMachineFunctionERNS_15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = PID 445 RUNNING AT EcoSISTEM-primary-xZvHtGre = EXIT CODE: 9 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES =================================================================================== YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Terminated (signal 15) This typically refers to a problem with your application. Please see the FAQ page for debugging suggestions operator() at /source/src/jitlayers.cpp:1612 verifyLLVMIR at /source/src/pipeline.cpp:878 addModule at /source/src/jitlayers.cpp:2093 jl_compile_codeinst_now at /source/src/jitlayers.cpp:682 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:873 jl_compile_method_internal at /source/src/gf.c:3535 _jl_invoke at /source/src/gf.c:3993 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] jl_f_invokelatest at /source/src/builtins.c:877 profile_printing_listener at ./Base.jl:336 #start_profile_listener##0 at ./Base.jl:354 jfptr_YY.start_profile_listenerYY.YY.0_3354.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 4342937474 (Pool: 4342887119; Big: 50355); GC: 1746 run at /source/src/llvm-remove-addrspaces.cpp:431 run at /source/src/llvm-remove-addrspaces.cpp:455 run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:791 operator() at /source/src/jitlayers.cpp:1510 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1471 [inlined] operator() at /source/src/jitlayers.cpp:1623 [inlined] addModule at /source/src/jitlayers.cpp:2080 jl_compile_codeinst_now at /source/src/jitlayers.cpp:682 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:873 jl_compile_method_internal at /source/src/gf.c:3535 _jl_invoke at /source/src/gf.c:3993 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:896 ansi_write_ at ./strings/annotated_io.jl:216 [inlined] print at ./strings/annotated_io.jl:241 [inlined] print at ./strings/io.jl:46 println at ./strings/io.jl:77 [inlined] print_tree at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1249 tree at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1309 print_group at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:389 #print#5 at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:331 print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 [inlined] print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 [inlined] print at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:271 _peek_report at /source/usr/share/julia/stdlib/v1.13/Profile/src/Profile.jl:94 jfptr__peek_report_4271.1 at /opt/julia/share/julia/compiled/v1.13/Profile/nGhxz_g5frP.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] jl_f_invokelatest at /source/src/builtins.c:877 profile_printing_listener at ./Base.jl:336 #start_profile_listener##0 at ./Base.jl:354 jfptr_YY.start_profile_listenerYY.YY.0_3354.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3985 [inlined] ijl_apply_generic at /source/src/gf.c:4198 jl_apply at /source/src/julia.h:2378 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 32475561 (Pool: 32474834; Big: 727); GC: 27 PkgEval terminated after 2801.18s: test duration exceeded the time limit