Package evaluation of SGtSNEpi on Julia 1.13.0-DEV.985 (9c94e7ae32*) started at 2025-08-14T15:17:58.218 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.68s ################################################################################ # Installation # Installing SGtSNEpi... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [e6c19c8d] + SGtSNEpi v0.4.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [ec485272] + ArnoldiMethod v0.4.0 [fa961155] + CEnum v0.5.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌅ [5ae59095] + Colors v0.12.11 [34da2185] + Compat v4.18.0 ⌅ [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [53c48c17] + FixedPointNumbers v0.8.5 [86223c79] + Graphs v1.13.0 [0e44f5e4] + Hwloc v3.3.0 [d25df0c9] + Inflate v0.1.5 [692b3bcd] + JLLWrappers v1.7.1 [1914dd2f] + MacroTools v0.5.16 [b8a86587] + NearestNeighbors v0.4.22 [bac558e1] + OrderedCollections v1.8.1 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.5.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [e6c19c8d] + SGtSNEpi v0.4.0 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [f5851436] + FFTW_jll v3.3.11+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [c2c51ba6] + sgtsnepi_jll v3.0.0+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.42s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:76 Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: FLANN Failed to precompile FLANN [4ef67f76-e0de-5105-ac01-03b6482fb4f8] to "/home/pkgeval/.julia/compiled/v1.13/FLANN/jl_btZoxW" (ProcessExited(1)). ERROR: LoadError: FLANN not properly installed. Please run Pkg.build("FLANN") Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] top-level scope @ ~/.julia/packages/FLANN/a7m6V/src/FLANN.jl:12 [3] include(mod::Module, _path::String) @ Base ./Base.jl:308 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3017 [5] top-level scope @ stdin:5 [6] eval(m::Module, e::Any) @ Core ./boot.jl:489 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2863 [8] include_string @ ./loading.jl:2873 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [10] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/FLANN/a7m6V/src/FLANN.jl:3 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 719.22s ################################################################################ # Testing # Testing SGtSNEpi Status `/tmp/jl_JEWmrJ/Project.toml` ⌅ [5ae59095] Colors v0.12.11 [b4f34e82] Distances v0.10.12 [4ef67f76] FLANN v1.1.0 [86223c79] Graphs v1.13.0 [0e44f5e4] Hwloc v3.3.0 [ee78f7c6] Makie v0.24.5 [b8a86587] NearestNeighbors v0.4.22 [ae029012] Requires v1.3.1 [e6c19c8d] SGtSNEpi v0.4.0 [c2c51ba6] sgtsnepi_jll v3.0.0+0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_JEWmrJ/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.3.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [ec485272] ArnoldiMethod v0.4.0 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [18cc8868] BaseDirs v1.3.2 [9e28174c] BinDeps v1.0.2 [fa961155] CEnum v0.5.0 [96374032] CRlibm v1.0.2 [d360d2e6] ChainRulesCore v1.26.0 [a2cac450] ColorBrewer v0.4.1 [35d6a980] ColorSchemes v3.30.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [34da2185] Compat v4.18.0 [95dc2771] ComputePipeline v0.1.4 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [927a84f5] DelaunayTriangulation v1.6.4 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [429591f6] ExactPredicates v2.2.8 [411431e0] Extents v0.1.6 [7a1cc6ca] FFTW v1.9.0 [4ef67f76] FLANN v1.1.0 [5789e2e9] FileIO v1.17.0 ⌅ [8fc22ac5] FilePaths v0.8.3 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.8 [5c1252a2] GeometryBasics v0.5.10 [86223c79] Graphs v1.13.0 [3955a311] GridLayoutBase v0.11.1 [42e2da0e] Grisu v1.0.2 [0e44f5e4] Hwloc v3.3.0 [34004b35] HypergeometricFunctions v0.3.28 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [a98d9a8b] Interpolations v0.16.1 ⌅ [d1acc4aa] IntervalArithmetic v0.22.36 [8197267c] IntervalSets v0.7.11 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [b835a17e] JpegTurbo v0.1.6 [5ab0869b] KernelDensity v0.6.10 [b964fa9f] LaTeXStrings v1.4.0 [8cdb02fc] LazyModules v0.3.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [ee78f7c6] Makie v0.24.5 [dbb5928d] MappedArrays v0.4.2 [0a4f8689] MathTeXEngine v0.6.6 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 [b8a86587] NearestNeighbors v0.4.22 [f09324ee] Netpbm v1.1.1 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.17.0 [52e1d378] OpenEXR v0.3.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [f57f5aa1] PNGFiles v0.4.4 [19eb6ba3] Packing v0.5.1 [5432bcbf] PaddedViews v0.5.12 [69de0a69] Parsers v2.8.3 [eebad327] PkgVersion v0.3.3 [995b91a9] PlotUtils v1.4.3 [647866c9] PolygonOps v0.1.2 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.5.0 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [4b34888f] QOI v1.0.1 [1fd47b50] QuadGK v2.11.2 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [5eaf0fd0] RoundingEmulator v0.2.1 [e6c19c8d] SGtSNEpi v0.4.0 [fdea26ae] SIMD v3.7.1 [6c6a2e73] Scratch v1.3.0 [65257c39] ShaderAbstractions v0.5.0 [992d4aef] Showoff v1.0.3 [73760f76] SignedDistanceFields v0.4.0 [699a6c99] SimpleTraits v0.9.5 [45858cf5] Sixel v0.1.5 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.5.1 [860ef19b] StableRNGs v1.0.3 [cae243ae] StackViews v0.1.2 [90137ffa] StaticArrays v1.9.14 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [731e570b] TiffImages v0.11.4 [3bb67fe8] TranscodingStreams v0.11.3 [981d1d27] TriplotBase v0.1.0 [30578b45] URIParser v0.4.1 [1cfade01] UnicodeFun v0.4.1 [1986cc42] Unitful v1.24.0 [e3aaa7dc] WebP v0.1.3 [efce3f68] WoodburyMatrices v1.0.0 [6e34b625] Bzip2_jll v1.0.9+0 [4e9b3aee] CRlibm_jll v1.0.1+0 [83423d85] Cairo_jll v1.18.5+0 [5ae413db] EarCut_jll v2.2.4+0 [2e619515] Expat_jll v2.6.5+0 ⌅ [b22a6f82] FFMPEG_jll v6.1.3+0 [f5851436] FFTW_jll v3.3.11+0 [a3f928ae] Fontconfig_jll v2.16.0+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [b0724c58] GettextRuntime_jll v0.22.4+0 [59f7168a] Giflib_jll v5.2.3+0 [7746bdde] Glib_jll v2.84.3+0 [3b182d85] Graphite2_jll v1.3.15+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [e33a78d0] Hwloc_jll v2.12.1+0 [905a6f67] Imath_jll v3.1.11+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [aacddb02] JpegTurbo_jll v3.1.1+0 [c1c5ebd0] LAME_jll v3.100.3+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.0+0 [89763e89] Libtiff_jll v4.7.1+0 [38a345b3] Libuuid_jll v2.41.0+0 [856f044c] MKL_jll v2025.2.0+0 [e7412a2a] Ogg_jll v1.3.6+0 [6cdc7f73] OpenBLASConsistentFPCSR_jll v0.3.29+0 [18a262bb] OpenEXR_jll v3.2.4+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [91d4177d] Opus_jll v1.5.2+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [f50d1b31] Rmath_jll v0.5.1+0 [ffd25f8a] XZ_jll v5.8.1+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [9a68df92] isoband_jll v0.2.3+0 [a4ae2306] libaom_jll v3.12.1+0 [0ac62f75] libass_jll v0.17.4+0 [f638f0a6] libfdk_aac_jll v2.0.4+0 [b53b4c65] libpng_jll v1.6.50+0 [075b6546] libsixel_jll v1.10.5+0 [f27f6e37] libvorbis_jll v1.3.8+0 [c5f90fcd] libwebp_jll v1.6.0+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [c2c51ba6] sgtsnepi_jll v3.0.0+0 [1270edf5] x264_jll v10164.0.1+0 [dfaa095f] x265_jll v4.1.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [8bf52ea8] CRC32c v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 3049.3 ms ✓ QuadGK 29326.5 ms ✓ ImageCore 8468.7 ms ✓ ColorSchemes 1305.0 ms ✓ FilePaths 1621.5 ms ✓ StructArrays → StructArraysStaticArraysExt 6304.2 ms ✓ PkgVersion 3516.3 ms ✓ ColorBrewer 1842.4 ms ✓ ColorVectorSpace → SpecialFunctionsExt 4876.8 ms ✓ IntelOpenMP_jll 5505.3 ms ✓ QOI 6547.4 ms ✓ OpenEXR 3924.1 ms ✓ Interpolations → InterpolationsUnitfulExt 7832.5 ms ✓ FreeTypeAbstraction 5951.5 ms ✓ ShaderAbstractions 5788.7 ms ✓ IntervalArithmetic 4184.8 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 10426.9 ms ✓ Distributions 3987.1 ms ✓ ImageBase 6730.4 ms ✓ PNGFiles 9225.3 ms ✓ JpegTurbo 9104.6 ms ✓ WebP 10188.7 ms ✓ Sixel 17120.4 ms ✓ PlotUtils 62615.0 ms ✓ TiffImages 5312.6 ms ✓ MKL_jll 28557.2 ms ✓ MathTeXEngine 1770.2 ms ✓ IntervalArithmetic → IntervalArithmeticSparseArraysExt 1743.4 ms ✓ IntervalArithmetic → IntervalArithmeticLinearAlgebraExt 1258.1 ms ✓ IntervalArithmetic → IntervalArithmeticIntervalSetsExt 4142.4 ms ✓ Distributions → DistributionsTestExt 4336.5 ms ✓ Distributions → DistributionsChainRulesCoreExt 5781.9 ms ✓ ImageAxes 7287.8 ms ✓ ExactPredicates 44018.4 ms ✓ KernelDensity 4329.5 ms ✓ ImageMetadata 10207.9 ms ✓ DelaunayTriangulation 7196.4 ms ✓ Netpbm 350873.7 ms ✓ Makie 38 dependencies successfully precompiled in 709 seconds. 226 already precompiled. Precompiling packages... 7805.8 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 9 seconds. 49 already precompiled. Precompiling packages... 971.0 ms ✓ Distances → DistancesChainRulesCoreExt 1 dependency successfully precompiled in 1 seconds. 11 already precompiled. [ Info: Forming kNN graph [k = 30 | type : exact] [ Info: All 5000 elements converged numerically, avg(#iter) = 18.0 [ Info: Forming kNN graph [k = 30 | type : flann] Number of vertices: 5000 Embedding dimensions: 1 Rescaling parameter λ: 10 Early exag. multiplier α: 12 Maximum iterations: 300 Early exag. iterations: 150 Learning rate: 200 Box side length h: 1 Drop edges originating from leaf nodes? 0 Number of processes: 1 5000 out of 5000 nodes already stochastic m = 5000 | n = 5000 | nnz = 222848 WARNING: Randomizing initial points; non-reproducible results Setting-up parallel (double-precision) FFTW: 1 Iteration 1: error is 4.97423 Iteration 50: error is 4.97423 (50 iterations in 0.150799 seconds) Iteration 100: error is 4.97423 (50 iterations in 0.1435 seconds) Iteration 150: error is 4.97423 (50 iterations in 0.141813 seconds) Iteration 200: error is 4.97423 (50 iterations in 0.140259 seconds) Iteration 250: error is 4.97423 (50 iterations in 0.14053 seconds) Iteration 299: error is 4.92094 (50 iterations in 0.137408 seconds) --- Time spent in each module --- Attractive forces: 0.61764 sec [78.4949%] | Repulsive forces: 0.169214 sec [21.5051%] [ Info: Forming kNN graph [k = 30 | type : exact] [ Info: All 5000 elements converged numerically, avg(#iter) = 18.0 [ Info: Forming kNN graph [k = 30 | type : flann] Number of vertices: 5000 Embedding dimensions: 2 Rescaling parameter λ: 10 Early exag. multiplier α: 12 Maximum iterations: 300 Early exag. iterations: 150 Learning rate: 200 Box side length h: 1 Drop edges originating from leaf nodes? 0 Number of processes: 1 5000 out of 5000 nodes already stochastic m = 5000 | n = 5000 | nnz = 222848 WARNING: Randomizing initial points; non-reproducible results Setting-up parallel (double-precision) FFTW: 1 Iteration 1: error is 4.97423 Iteration 50: error is 4.97423 (50 iterations in 0.260912 seconds) Iteration 100: error is 4.97423 (50 iterations in 0.230607 seconds) Iteration 150: error is 4.97423 (50 iterations in 0.23123 seconds) Iteration 200: error is 4.97423 (50 iterations in 0.228776 seconds) Iteration 250: error is 4.97423 (50 iterations in 0.22944 seconds) Iteration 299: error is 4.84547 (50 iterations in 0.226789 seconds) --- Time spent in each module --- Attractive forces: 0.856714 sec [66.0737%] | Repulsive forces: 0.43989 sec [33.9263%] [ Info: Forming kNN graph [k = 30 | type : exact] [ Info: All 5000 elements converged numerically, avg(#iter) = 18.0 [ Info: Forming kNN graph [k = 30 | type : flann] Number of vertices: 5000 Embedding dimensions: 3 Rescaling parameter λ: 10 Early exag. multiplier α: 12 Maximum iterations: 300 Early exag. iterations: 150 Learning rate: 200 Box side length h: 1 Drop edges originating from leaf nodes? 0 Number of processes: 1 5000 out of 5000 nodes already stochastic m = 5000 | n = 5000 | nnz = 222848 WARNING: Randomizing initial points; non-reproducible results Setting-up parallel (double-precision) FFTW: 1 Iteration 1: error is 4.97423 Iteration 50: error is 4.97423 (50 iterations in 0.819385 seconds) Iteration 100: error is 4.97423 (50 iterations in 0.783468 seconds) Iteration 150: error is 4.97423 (50 iterations in 0.782095 seconds) Iteration 200: error is 4.97423 (50 iterations in 0.774714 seconds) Iteration 250: error is 4.97423 (50 iterations in 0.77824 seconds) Iteration 299: error is 4.74198 (50 iterations in 0.779047 seconds) --- Time spent in each module --- Attractive forces: 0.985535 sec [21.5592%] | Repulsive forces: 3.58576 sec [78.4408%] [ Info: Forming kNN graph [k = 30 | type : exact] [ Info: All 5000 elements converged numerically, avg(#iter) = 18.0 [ Info: Forming kNN graph [k = 30 | type : flann] Number of vertices: 5000 Embedding dimensions: 1 Rescaling parameter λ: 10 Early exag. multiplier α: 12 Maximum iterations: 300 Early exag. iterations: 150 Learning rate: 200 Box side length h: 1 Drop edges originating from leaf nodes? 0 Number of processes: 1 5000 out of 5000 nodes already stochastic m = 5000 | n = 5000 | nnz = 222848 WARNING: Randomizing initial points; non-reproducible results Setting-up parallel (double-precision) FFTW: 1 Iteration 1: error is 4.97423 Iteration 50: error is 4.97423 (50 iterations in 0.151292 seconds) Iteration 100: error is 4.97423 (50 iterations in 0.142296 seconds) Iteration 150: error is 4.97423 (50 iterations in 0.141223 seconds) Iteration 200: error is 4.97423 (50 iterations in 0.142242 seconds) Iteration 250: error is 4.97423 (50 iterations in 0.142029 seconds) Iteration 299: error is 4.91981 (50 iterations in 0.139693 seconds) --- Time spent in each module --- Attractive forces: 0.620551 sec [78.4078%] | Repulsive forces: 0.170889 sec [21.5922%] ┌ Warning: Found `resolution` in the theme when creating a `Scene`. The `resolution` keyword for `Scene`s and `Figure`s has been deprecated. Use `Figure(; size = ...` or `Scene(; size = ...)` instead, which better reflects that this is a unitless size and not a pixel resolution. The key could also come from `set_theme!` calls or related theming functions. └ @ Makie ~/.julia/packages/Makie/PpRC2/src/scenes.jl:264 [ Info: Forming kNN graph [k = 30 | type : exact] [ Info: All 5000 elements converged numerically, avg(#iter) = 18.0 [ Info: Forming kNN graph [k = 30 | type : flann] Number of vertices: 5000 Embedding dimensions: 2 Rescaling parameter λ: 10 Early exag. multiplier α: 12 Maximum iterations: 300 Early exag. iterations: 150 Learning rate: 200 Box side length h: 1 Drop edges originating from leaf nodes? 0 Number of processes: 1 5000 out of 5000 nodes already stochastic m = 5000 | n = 5000 | nnz = 222848 WARNING: Randomizing initial points; non-reproducible results Setting-up parallel (double-precision) FFTW: 1 Iteration 1: error is 4.97423 Iteration 50: error is 4.97423 (50 iterations in 0.261498 seconds) Iteration 100: error is 4.97423 (50 iterations in 0.229009 seconds) Iteration 150: error is 4.97423 (50 iterations in 0.253197 seconds) Iteration 200: error is 4.97423 (50 iterations in 0.25044 seconds) Iteration 250: error is 4.97423 (50 iterations in 0.248291 seconds) Iteration 299: error is 4.84586 (50 iterations in 0.246362 seconds) --- Time spent in each module --- Attractive forces: 0.913237 sec [66.5655%] | Repulsive forces: 0.4587 sec [33.4345%] ┌ Warning: Found `resolution` in the theme when creating a `Scene`. The `resolution` keyword for `Scene`s and `Figure`s has been deprecated. Use `Figure(; size = ...` or `Scene(; size = ...)` instead, which better reflects that this is a unitless size and not a pixel resolution. The key could also come from `set_theme!` calls or related theming functions. └ @ Makie ~/.julia/packages/Makie/PpRC2/src/scenes.jl:264 [ Info: Forming kNN graph [k = 30 | type : exact] [ Info: All 5000 elements converged numerically, avg(#iter) = 18.0 [ Info: Forming kNN graph [k = 30 | type : flann] Number of vertices: 5000 Embedding dimensions: 3 Rescaling parameter λ: 10 Early exag. multiplier α: 12 Maximum iterations: 300 Early exag. iterations: 150 Learning rate: 200 Box side length h: 1 Drop edges originating from leaf nodes? 0 Number of processes: 1 5000 out of 5000 nodes already stochastic m = 5000 | n = 5000 | nnz = 222848 WARNING: Randomizing initial points; non-reproducible results Setting-up parallel (double-precision) FFTW: 1 Iteration 1: error is 4.97423 Iteration 50: error is 4.97423 (50 iterations in 0.82184 seconds) Iteration 100: error is 4.97423 (50 iterations in 0.837341 seconds) Iteration 150: error is 4.97423 (50 iterations in 0.837819 seconds) Iteration 200: error is 4.97423 (50 iterations in 0.834575 seconds) Iteration 250: error is 4.97423 (50 iterations in 0.815423 seconds) Iteration 299: error is 4.7394 (50 iterations in 0.81974 seconds) --- Time spent in each module --- Attractive forces: 1.13051 sec [23.583%] | Repulsive forces: 3.66325 sec [76.417%] ┌ Warning: Found `resolution` in the theme when creating a `Scene`. The `resolution` keyword for `Scene`s and `Figure`s has been deprecated. Use `Figure(; size = ...` or `Scene(; size = ...)` instead, which better reflects that this is a unitless size and not a pixel resolution. The key could also come from `set_theme!` calls or related theming functions. └ @ Makie ~/.julia/packages/Makie/PpRC2/src/scenes.jl:264 Precompiling packages... 6613.8 ms ✓ BinDeps Info Given FLANN was explicitly requested, output will be shown live  ERROR: LoadError: FLANN not properly installed. Please run Pkg.build("FLANN") Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] top-level scope  @ ~/.julia/packages/FLANN/a7m6V/src/FLANN.jl:12  [3] include(mod::Module, _path::String)  @ Base ./Base.jl:308  [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3017  [5] top-level scope  @ stdin:5  [6] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2863  [8] include_string  @ ./loading.jl:2873 [inlined]  [9] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:328  [10] _start()  @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/FLANN/a7m6V/src/FLANN.jl:3 in expression starting at stdin:5 ✗ FLANN 1 dependency successfully precompiled in 16 seconds. 31 already precompiled. SGtSNEpi.jl: Error During Test at /home/pkgeval/.julia/packages/SGtSNEpi/PpCqk/test/runtests.jl:8 Got exception outside of a @test The following 1 direct dependency failed to precompile: FLANN Failed to precompile FLANN [4ef67f76-e0de-5105-ac01-03b6482fb4f8] to "/home/pkgeval/.julia/compiled/v1.13/FLANN/jl_qnDeeg" (ProcessExited(1)). ERROR: LoadError: FLANN not properly installed. Please run Pkg.build("FLANN") Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] top-level scope @ ~/.julia/packages/FLANN/a7m6V/src/FLANN.jl:12 [3] include(mod::Module, _path::String) @ Base ./Base.jl:308 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3017 [5] top-level scope @ stdin:5 [6] eval(m::Module, e::Any) @ Core ./boot.jl:489 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2863 [8] include_string @ ./loading.jl:2873 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [10] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/FLANN/a7m6V/src/FLANN.jl:3 in expression starting at stdin: Test Summary: | Pass Error Total Time SGtSNEpi.jl | 24 1 25 3m58.3s exact knn | 24 24 3m42.1s RNG of the outermost testset: Random.Xoshiro(0x1f9cdacc611654f9, 0xcb04756c6fa37595, 0xb43f29d9a916c078, 0x9e851bc79b784ad1, 0x5b89cec73dbc83c7) ERROR: LoadError: Some tests did not pass: 24 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/SGtSNEpi/PpCqk/test/runtests.jl:8 Testing failed after 1043.12s ERROR: LoadError: Package SGtSNEpi errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2672 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2521 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:308 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:330 [14] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1854.09s: package fails to precompile