Package evaluation of Graphs on Julia 1.13.0-DEV.985 (9c94e7ae32*) started at 2025-08-14T13:20:41.173 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.06s ################################################################################ # Installation # Installing Graphs... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [86223c79] + Graphs v1.13.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [ec485272] + ArnoldiMethod v0.4.0 [34da2185] + Compat v4.18.0 ⌅ [864edb3b] + DataStructures v0.18.22 [86223c79] + Graphs v1.13.0 [d25df0c9] + Inflate v0.1.5 [1914dd2f] + MacroTools v0.5.16 [bac558e1] + OrderedCollections v1.8.1 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.5.0 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 0.94s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 17.85s ################################################################################ # Testing # Testing Graphs Status `/tmp/jl_VhyDna/Project.toml` ⌅ [4c88cf16] Aqua v0.6.7 [ec485272] ArnoldiMethod v0.4.0 ⌅ [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 ⌅ [e30172f5] Documenter v0.27.25 [86223c79] Graphs v1.13.0 [d25df0c9] Inflate v0.1.5 [c3a54625] JET v0.10.6 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [699a6c99] SimpleTraits v0.9.5 [860ef19b] StableRNGs v1.0.3 [10745b16] Statistics v1.11.1 [1986cc42] Unitful v1.24.0 [2a0f44e3] Base64 v1.11.0 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [44cfe95a] Pkg v1.13.0 [9a3f8284] Random v1.11.0 [1a1011a3] SharedArrays v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_VhyDna/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 ⌅ [4c88cf16] Aqua v0.6.7 [ec485272] ArnoldiMethod v0.4.0 [00ebfdb7] CSTParser v3.4.3 ⌅ [da1fd8a2] CodeTracking v1.3.9 ⌅ [a80b9123] CommonMark v0.8.16 [34da2185] Compat v4.18.0 [807dbc54] Compiler v0.1.1 [a8cc5b0e] Crayons v4.1.1 ⌅ [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [c27321d9] Glob v1.3.1 [86223c79] Graphs v1.13.0 [b5f81e59] IOCapture v0.2.5 [d25df0c9] Inflate v0.1.5 [c3a54625] JET v0.10.6 [682c06a0] JSON v0.21.4 ⌅ [98e50ef6] JuliaFormatter v1.0.62 ⌃ [aa1ae85d] JuliaInterpreter v0.10.3 [70703baa] JuliaSyntax v1.0.2 ⌃ [6f1432cf] LoweredCodeUtils v3.4.2 [1914dd2f] MacroTools v0.5.16 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.5.0 [699a6c99] SimpleTraits v0.9.5 [860ef19b] StableRNGs v1.0.3 [90137ffa] StaticArrays v1.9.14 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [0796e94c] Tokenize v0.5.29 [1986cc42] Unitful v1.24.0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 42784.5 ms ✓ JuliaFormatter 1 dependency successfully precompiled in 43 seconds. 21 already precompiled. ┌ Warning: `isbindingresolved(m::Module, var::Symbol)` is deprecated, use `true` instead. │ caller = walkmodules(f::Aqua.var"#undefined_exports##0#undefined_exports##1"{Vector{Symbol}}, x::Module) at exports.jl:5 └ @ Core ~/.julia/packages/Aqua/zpdNP/src/exports.jl:5 ┌ Warning: `isbindingresolved(m::Module, var::Symbol)` is deprecated, use `true` instead. │ caller = walkmodules(f::Aqua.Piracy.var"#3#4"{Bool, IdSet{Any}, Vector{Method}}, x::Module) at exports.jl:5 └ @ Core ~/.julia/packages/Aqua/zpdNP/src/exports.jl:5 ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. ┌ Error: doctest failure in ~/.julia/packages/Graphs/awp48/src/community/clique_percolation.jl:12-26 │ │ ```jldoctest │ julia> using Graphs │ │ julia> clique_percolation(clique_graph(3, 2)) │ 2-element Vector{BitSet}: │ BitSet([4, 5, 6]) │ BitSet([1, 2, 3]) │ │ julia> clique_percolation(clique_graph(3, 2), k=2) │ 1-element Vector{BitSet}: │ BitSet([1, 2, 3, 4, 5, 6]) │ │ julia> clique_percolation(clique_graph(3, 2), k=4) │ BitSet[] │ ``` │ │ Subexpression: │ │ clique_percolation(clique_graph(3, 2)) │ │ Evaluated output: │ │ 2-element Vector{BitSet}: │ BitSet([1, 2, 3]) │ BitSet([4, 5, 6]) │ │ Expected output: │ │ 2-element Vector{BitSet}: │ BitSet([4, 5, 6]) │ BitSet([1, 2, 3]) │ │ diff = │ Warning: Diff output requires color. │ 2-element Vector{BitSet}: │ BitSet([4, 5, 6]) │ BitSet([1, 2, 3])3]) │ BitSet([4, 5, 6]) └ @ Documenter.DocTests ~/.julia/packages/Graphs/awp48/src/community/clique_percolation.jl:12 ┌ Error: doctest failure in ~/.julia/packages/Graphs/awp48/src/cycles/basis.jl:16-27 │ │ ```jldoctest │ julia> using Graphs │ │ julia> elist = [(1,2),(2,3),(2,4),(3,4),(4,1),(1,5)]; │ │ julia> g = SimpleGraph(Graphs.SimpleEdge.(elist)); │ │ julia> cycle_basis(g) │ 2-element Vector{Vector{Int64}}: │ [2, 4, 1] │ [2, 3, 4] │ ``` │ │ Subexpression: │ │ cycle_basis(g) │ │ Evaluated output: │ │ 2-element Vector{Vector{Int64}}: │ [2, 4, 3] │ [2, 1, 4] │ │ Expected output: │ │ 2-element Vector{Vector{Int64}}: │ [2, 4, 1] │ [2, 3, 4] │ │ diff = │ Warning: Diff output requires color. │ 2-element Vector{Vector{Int64}}: │ [2, 4, 1] │ 3] │ [2, 3, 1, 4] └ @ Documenter.DocTests ~/.julia/packages/Graphs/awp48/src/cycles/basis.jl:16 ┌ Error: Doctesting failed │ exception = │ `makedocs` encountered a doctest error. Terminating build │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] runner(::Type{Documenter.Builder.Doctest}, doc::Documenter.Documents.Document) │ @ Documenter.Builder ~/.julia/packages/Documenter/bYYzK/src/Builder.jl:216 │ [3] dispatch(::Type{Documenter.Builder.DocumentPipeline}, x::Documenter.Documents.Document) │ @ Documenter.Utilities.Selectors ~/.julia/packages/Documenter/bYYzK/src/Utilities/Selectors.jl:170 │ [4] #3 │ @ ~/.julia/packages/Documenter/bYYzK/src/Documenter.jl:273 [inlined] │ [5] cd(f::Documenter.var"#3#4"{Documenter.Documents.Document}, dir::String) │ @ Base.Filesystem ./file.jl:112 │ [6] makedocs(; debug::Bool, format::Documenter.Writers.HTMLWriter.HTML, kwargs::@Kwargs{root::String, source::String, sitename::String, doctest::Symbol, modules::Vector{Module}, doctestfilters::Vector{Regex}}) │ @ Documenter ~/.julia/packages/Documenter/bYYzK/src/Documenter.jl:272 │ [7] kwcall(::@NamedTuple{root::String, source::String, sitename::String, doctest::Symbol, modules::Vector{Module}, doctestfilters::Vector{Regex}}, ::typeof(makedocs)) │ @ Documenter ~/.julia/packages/Documenter/bYYzK/src/Documenter.jl:266 │ [8] (::Documenter.var"#all_doctests#40"{Bool, Vector{Regex}, Vector{Module}})() │ @ Documenter ~/.julia/packages/Documenter/bYYzK/src/Documenter.jl:942 │ [9] macro expansion │ @ ~/.julia/packages/Documenter/bYYzK/src/Documenter.jl:963 [inlined] │ [10] macro expansion │ @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:742 [inlined] │ [11] macro expansion │ @ ~/.julia/packages/Documenter/bYYzK/src/Documenter.jl:963 [inlined] │ [12] macro expansion │ @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] │ [13] doctest(source::String, modules::Vector{Module}; fix::Bool, testset::String, doctestfilters::Vector{Regex}) │ @ Documenter ~/.julia/packages/Documenter/bYYzK/src/Documenter.jl:963 │ [14] doctest │ @ ~/.julia/packages/Documenter/bYYzK/src/Documenter.jl:927 [inlined] │ [15] doctest(package::Module; manual::Bool, testset::Nothing, kwargs::@Kwargs{}) │ @ Documenter ~/.julia/packages/Documenter/bYYzK/src/Documenter.jl:898 │ [16] doctest(package::Module) │ @ Documenter ~/.julia/packages/Documenter/bYYzK/src/Documenter.jl:884 │ [17] macro expansion │ @ ~/.julia/packages/Graphs/awp48/test/runtests.jl:172 [inlined] │ [18] macro expansion │ @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] │ [19] top-level scope │ @ ~/.julia/packages/Graphs/awp48/test/runtests.jl:154 │ [20] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [21] top-level scope │ @ none:6 │ [22] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [23] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:296 │ [24] _start() │ @ Base ./client.jl:563 └ @ Documenter ~/.julia/packages/Documenter/bYYzK/src/Documenter.jl:952 Doctests: Graphs: Test Failed at /home/pkgeval/.julia/packages/Documenter/bYYzK/src/Documenter.jl:963 Expression: all_doctests() Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:745 [inlined] [2] macro expansion @ ~/.julia/packages/Documenter/bYYzK/src/Documenter.jl:963 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [4] doctest(source::String, modules::Vector{Module}; fix::Bool, testset::String, doctestfilters::Vector{Regex}) @ Documenter ~/.julia/packages/Documenter/bYYzK/src/Documenter.jl:963 ┌ Warning: squash(::AbstractGraph) is deprecated in favor of methods that specialize on the graph type. │ caller = macro expansion at core.jl:112 [inlined] └ @ Core ~/.julia/packages/Graphs/awp48/test/core.jl:112 Test Summary: | Pass Fail Broken Total Time Graphs | 30112 1 2 30115 31m29.2s Code quality (JET.jl) | 1 1 4m49.3s Code quality (Aqua.jl) | 8 8 27.6s Code formatting (JuliaFormatter.jl) | 1 1 1m13.0s Doctests: Graphs | 1 1 2m27.3s Actual tests | 30102 2 30104 22m28.5s Graphs.SimpleGraphs | 3669 3669 3m33.3s Graphs.LinAlg | 406 406 2m16.0s Graphs.Parallel | 721 721 4m07.5s Interface | 21 21 0.8s Core | 118 118 24.1s Operators | 367 367 37.4s Decomposition | 35 35 8.5s Distance | 29 29 6.2s Transitivity | 57 57 8.2s Hawick-James Cycles | 27 27 3.9s Cycles | 88 88 4.3s Karp Minimum Cycle Mean | 20 20 5.8s Cycle Basis | 12 12 7.9s Limited Length Cycles | 50 50 0.8s ICT | 42 42 1.9s Edit distance | 12 12 24.5s Connectivity | 285 285 24.1s Persistence | 16 16 2.9s Path from parents | 5 5 0.0s A star | 28 28 9.5s Bellman Ford | 56 56 14.2s D'Esopo-Pape | 64 64 7.9s Dijkstra | 34 34 13.5s Johnson | 16 16 13.5s Floyd Warshall | 18 18 6.4s Yen | 87 87 30.0s Shortest_Path_Faster_Algorithm | 76 76 4.4s Longest path | 3 3 0.7s BFS | 75 75 12.0s Bipartiteness | 27 27 3.9s Greedy Coloring | 31 31 1.1s DFS | 63 63 4.7s Max adj visit | 35 35 17.1s Random walks | 21879 21879 31.6s Diffusion Simulation | 57 57 12.1s BFSIterator | 25 25 3.1s DFSIterator | 21 21 1.1s Eulerian tours/cycles | 11 1 12 1.0s All simple paths | 22 22 1.2s Cliques | 8 8 4.2s Core periphery | 62 62 0.9s Label propagation | 24 24 5.3s Modularity | 18 18 9.1s Clustering | 13 13 3.8s Clique percolation | 1 1 2.2s Assortativity | 24 24 1.6s Rich club coefficient | 30 30 1.4s Betweenness | 26 26 15.7s Closeness | 16 16 5.0s Degree | 6 6 1.4s Katz | 2 2 12.3s Pagerank | 36 36 23.1s Eigenvector | 4 4 4.3s Stress | 8 8 3.0s Radiality | 4 4 1.6s Utils | 54 54 1.7s Unweighted Contiguous Partition | 3 3 0.2s Greedy Contiguous Partition | 3 3 0.3s Optimal Contiguous Partition | 3 3 0.0s collect_if_not_vector | 12 12 0.4s Generator deprecations | 45 45 3.3s Boruvka | 36 36 9.4s Kruskal | 10 10 7.5s Prim | 4 4 2.0s Steiner Tree | 24 24 13.6s Articulation | 23 23 2.6s Biconnect | 9 9 2.3s Bridge | 30 30 3.6s Normalized Cut | 29 29 39.3s Karger Minimum Cut | 30 30 5.4s Degree Dominating Set | 21 21 2.1s Minimal Dominating Set | 21 21 1.0s Degree Independent Set | 21 21 1.2s Maximal Independent Set | 18 18 1.0s Degree Vertex Cover | 9 9 0.6s Random Vertex Cover | 21 21 1.0s Tree utilities | 79 79 4.5s Experimental | 706 1 707 2m10.1s RNG of the outermost testset: Xoshiro(0x4b8f20fbf4f8a6b1, 0x9357947b3287b86e, 0x0c8b736eb83775ae, 0xdb8532989f452463, 0x44f381c380891b16) ERROR: LoadError: Some tests did not pass: 30112 passed, 1 failed, 0 errored, 2 broken. in expression starting at /home/pkgeval/.julia/packages/Graphs/awp48/test/runtests.jl:153 Testing failed after 1961.66s ERROR: LoadError: Package Graphs errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2672 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2521 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:308 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:330 [14] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 2012.66s: package has test failures