Package evaluation of FiniteMesh on Julia 1.13.0-DEV.985 (9c94e7ae32*) started at 2025-08-14T14:54:31.923 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.05s ################################################################################ # Installation # Installing FiniteMesh... Resolving package versions... Installed Conda ────── v1.10.2 Installed PyCall ───── v1.96.4 Installed FiniteMesh ─ v0.3.6 Updating `~/.julia/environments/v1.13/Project.toml` [d3ebd857] + FiniteMesh v0.3.6 Updating `~/.julia/environments/v1.13/Manifest.toml` [8f4d0f93] + Conda v1.10.2 [ffbed154] + DocStringExtensions v0.9.5 [d3ebd857] + FiniteMesh v0.3.6 [682c06a0] + JSON v0.21.4 [1914dd2f] + MacroTools v0.5.16 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.5.0 [92933f4c] + ProgressMeter v1.10.4 [438e738f] + PyCall v1.96.4 [81def892] + VersionParsing v1.3.0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b27032c2] + LibCURL v0.6.4 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+1 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 Building Conda ─────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log` Building PyCall ────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Building FiniteMesh → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/3d2b3fd70f80b34d1a60233d09e73d324e9bafe2/build.log` Installation failed after 94.17s ERROR: LoadError: Error building `FiniteMesh`: /home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic( Channels: - conda-forge - defaults Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64 added / updated specs: - meshio The following packages will be downloaded: package | build ---------------------------|----------------- blosc-1.21.6 | he440d0b_1 47 KB conda-forge cached-property-1.5.2 | hd8ed1ab_1 4 KB conda-forge cached_property-1.5.2 | pyha770c72_1 11 KB conda-forge cftime-1.6.4 | py312hc0a28a1_1 242 KB conda-forge h5py-3.14.0 |nompi_py312h3faca00_100 1.3 MB conda-forge hdf4-4.2.15 | h2a13503_7 739 KB conda-forge hdf5-1.14.6 |nompi_h6e4c0c1_103 3.5 MB conda-forge importlib-metadata-8.7.0 | pyhe01879c_1 34 KB conda-forge importlib_metadata-8.7.0 | h40b2b14_1 22 KB conda-forge libaec-1.1.4 | h3f801dc_0 36 KB conda-forge libjpeg-turbo-3.1.0 | hb9d3cd8_0 614 KB conda-forge libnetcdf-4.9.2 |nompi_h21f7587_118 824 KB conda-forge libzip-1.11.2 | h6991a6a_0 106 KB conda-forge markdown-it-py-4.0.0 | pyhd8ed1ab_0 63 KB conda-forge mdurl-0.1.2 | pyhd8ed1ab_1 14 KB conda-forge meshio-5.3.5 | pyhd8ed1ab_0 374 KB conda-forge netcdf4-1.7.2 |nompi_py312h3805cb1_102 1.1 MB conda-forge pygments-2.19.2 | pyhd8ed1ab_0 868 KB conda-forge rich-14.1.0 | pyhe01879c_0 196 KB conda-forge snappy-1.2.2 | h03e3b7b_0 45 KB conda-forge typing_extensions-4.14.1 | pyhe01879c_0 50 KB conda-forge zipp-3.23.0 | pyhd8ed1ab_0 22 KB conda-forge zlib-1.3.1 | hb9d3cd8_2 90 KB conda-forge ------------------------------------------------------------ Total: 10.2 MB The following NEW packages will be INSTALLED: blosc conda-forge/linux-64::blosc-1.21.6-he440d0b_1 cached-property conda-forge/noarch::cached-property-1.5.2-hd8ed1ab_1 cached_property conda-forge/noarch::cached_property-1.5.2-pyha770c72_1 cftime conda-forge/linux-64::cftime-1.6.4-py312hc0a28a1_1 h5py conda-forge/linux-64::h5py-3.14.0-nompi_py312h3faca00_100 hdf4 conda-forge/linux-64::hdf4-4.2.15-h2a13503_7 hdf5 conda-forge/linux-64::hdf5-1.14.6-nompi_h6e4c0c1_103 importlib-metadata conda-forge/noarch::importlib-metadata-8.7.0-pyhe01879c_1 importlib_metadata conda-forge/noarch::importlib_metadata-8.7.0-h40b2b14_1 libaec conda-forge/linux-64::libaec-1.1.4-h3f801dc_0 libjpeg-turbo conda-forge/linux-64::libjpeg-turbo-3.1.0-hb9d3cd8_0 libnetcdf conda-forge/linux-64::libnetcdf-4.9.2-nompi_h21f7587_118 libzip conda-forge/linux-64::libzip-1.11.2-h6991a6a_0 markdown-it-py conda-forge/noarch::markdown-it-py-4.0.0-pyhd8ed1ab_0 mdurl conda-forge/noarch::mdurl-0.1.2-pyhd8ed1ab_1 meshio conda-forge/noarch::meshio-5.3.5-pyhd8ed1ab_0 netcdf4 conda-forge/linux-64::netcdf4-1.7.2-nompi_py312h3805cb1_102 pygments conda-forge/noarch::pygments-2.19.2-pyhd8ed1ab_0 rich conda-forge/noarch::rich-14.1.0-pyhe01879c_0 snappy conda-forge/linux-64::snappy-1.2.2-h03e3b7b_0 typing_extensions conda-forge/noarch::typing_extensions-4.14.1-pyhe01879c_0 zipp conda-forge/noarch::zipp-3.23.0-pyhd8ed1ab_0 zlib conda-forge/linux-64::zlib-1.3.1-hb9d3cd8_2 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge - defaults Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64 added / updated specs: - scipy The following packages will be downloaded: package | build ---------------------------|----------------- scipy-1.16.1 | py312h4ebe9ca_0 16.4 MB conda-forge ------------------------------------------------------------ Total: 16.4 MB The following NEW packages will be INSTALLED: scipy conda-forge/linux-64::scipy-1.16.1-py312h4ebe9ca_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [ Info: Running `conda config --add channels conda-forge --file /home/pkgeval/.julia/conda/3/x86_64/condarc-julia.yml --force` in root environment [ Info: Running `conda install -q -y meshio` in root environment [ Info: Running `conda install -q -y scipy` in root environment [ Info: installing python mates ERROR: LoadError: IOError: could not spawn `pip3 install meshio scipy --user`: no such file or directory (ENOENT) Stacktrace: [1] _spawn_primitive(file::String, cmd::Cmd, stdio::Memory{Union{RawFD, Base.SyncCloseFD, IO}}) @ Base ./process.jl:140 [2] _spawn @ ./process.jl:157 [inlined] [3] #_spawn##0 @ ./process.jl:149 [inlined] [4] setup_stdios(f::Base.var"#_spawn##0#_spawn##1"{Cmd}, stdios::Vector{Union{RawFD, Base.FileRedirect, IO}}) @ Base ./process.jl:236 [5] _spawn @ ./process.jl:148 [inlined] [6] run(::Cmd; wait::Bool) @ Base ./process.jl:516 [7] run(::Cmd) @ Base ./process.jl:514 [8] top-level scope @ ~/.julia/packages/FiniteMesh/xmLB8/deps/build.jl:16 [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:309 [10] top-level scope @ none:5 [11] eval(m::Module, e::Any) @ Core ./boot.jl:489 [12] exec_options(opts::Base.JLOptions) @ Base ./client.jl:296 [13] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/FiniteMesh/xmLB8/deps/build.jl:16 Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] (::Pkg.Operations.var"#145#146"{Bool, Pkg.Types.Context, String, PackageSpec, String})() @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:1590 [3] withenv(::Pkg.Operations.var"#145#146"{Bool, Pkg.Types.Context, String, PackageSpec, String}, ::Pair{String, String}, ::Vararg{Pair{String}}) @ Base ./env.jl:265 [4] (::Pkg.Operations.var"#208#209"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#145#146"{Bool, Pkg.Types.Context, String, PackageSpec, String}, Pkg.Types.Context, PackageSpec})() @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2445 [5] with_temp_env(fn::Pkg.Operations.var"#208#209"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#145#146"{Bool, Pkg.Types.Context, String, PackageSpec, String}, Pkg.Types.Context, PackageSpec}, temp_env::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2291 [6] (::Pkg.Operations.var"#204#205"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#145#146"{Bool, Pkg.Types.Context, String, PackageSpec, String}, Pkg.Types.Context, PackageSpec, String, String})(tmp::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2404 [7] mktempdir(fn::Pkg.Operations.var"#204#205"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#145#146"{Bool, Pkg.Types.Context, String, PackageSpec, String}, Pkg.Types.Context, PackageSpec, String, String}, parent::String; prefix::String) @ Base.Filesystem ./file.jl:899 [8] mktempdir(fn::Function, parent::String) @ Base.Filesystem ./file.jl:895 [9] #sandbox#200 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2351 [inlined] [10] kwcall(::@NamedTuple{preferences::Dict{String, Any}, allow_reresolve::Bool}, ::typeof(Pkg.Operations.sandbox), fn::Function, ctx::Pkg.Types.Context, target::PackageSpec, sandbox_path::String, sandbox_project_override::Pkg.Types.Project) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2341 [11] build_versions(ctx::Pkg.Types.Context, uuids::Set{UUID}; verbose::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:1567 [12] build_versions @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:1479 [inlined] [13] add(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}, new_git::Set{UUID}; allow_autoprecomp::Bool, preserve::PreserveLevel, platform::Base.BinaryPlatforms.Platform, target::Symbol) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:1923 [14] add @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:1868 [inlined] [15] add(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; preserve::PreserveLevel, platform::Base.BinaryPlatforms.Platform, target::Symbol, allow_autoprecomp::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:354 [16] add(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [17] add(pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [18] add(pkg::PackageSpec) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [19] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:112 [20] include(mod::Module, _path::String) @ Base ./Base.jl:308 [21] exec_options(opts::Base.JLOptions) @ Base ./client.jl:330 [22] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:109 PkgEval skipped after 169.99s: package could not be installed