Package evaluation of AlgebraicPetri on Julia 1.13.0-DEV.985 (9c94e7ae32*) started at 2025-08-14T21:44:45.636 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.7s ################################################################################ # Installation # Installing AlgebraicPetri... Resolving package versions... Installed CompositionsBase ──────────── v0.1.2 Installed DiffResults ───────────────── v1.1.0 Installed MacroTools ────────────────── v0.5.16 Installed LightXML ──────────────────── v0.9.2 Installed ForwardDiff ───────────────── v1.0.1 Installed NameResolution ────────────── v0.1.5 Installed CompTime ──────────────────── v0.1.2 Installed Adapt ─────────────────────── v4.3.0 Installed ConstructionBase ──────────── v1.6.0 Installed RuntimeGeneratedFunctions ─── v0.5.15 Installed AlgebraicInterfaces ───────── v0.1.4 Installed LabelledArrays ────────────── v1.16.1 Installed DataStructures ────────────── v0.18.22 Installed ExprTools ─────────────────── v0.1.10 Installed Compat ────────────────────── v4.18.0 Installed OrderedCollections ────────── v1.8.1 Installed Combinatorics ─────────────── v1.0.3 Installed ArrayInterface ────────────── v7.19.0 Installed SymbolicIndexingInterface ─── v0.3.43 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed DataAPI ───────────────────── v1.16.0 Installed RecipesBase ───────────────── v1.3.4 Installed Statistics ────────────────── v1.11.1 Installed JuliaVariables ────────────── v0.2.4 Installed PreallocationTools ────────── v0.4.31 Installed PrecompileTools ───────────── v1.3.2 Installed GATlab ────────────────────── v0.1.6 Installed DataValueInterfaces ───────── v1.0.0 Installed Measures ──────────────────── v0.3.2 Installed StaticArraysCore ──────────── v1.4.3 Installed CommonSubexpressions ──────── v0.3.1 Installed PrettyPrint ───────────────── v0.2.0 Installed ChainRulesCore ────────────── v1.26.0 Installed GPUArraysCore ─────────────── v0.2.0 Installed Colors ────────────────────── v0.13.1 Installed IrrationalConstants ───────── v0.2.4 Installed StaticArrays ──────────────── v1.9.14 Installed ColorTypes ────────────────── v0.12.1 Installed PEG ───────────────────────── v1.0.4 Installed NaNMath ───────────────────── v1.1.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Requires ──────────────────── v1.3.1 Installed JSON3 ─────────────────────── v1.14.3 Installed StringManipulation ────────── v0.4.1 Installed DiffRules ─────────────────── v1.15.1 Installed LogExpFunctions ───────────── v0.3.29 Installed Parsers ───────────────────── v2.8.3 Installed JSON ──────────────────────── v0.21.4 Installed PrettyTables ──────────────── v2.4.0 Installed XML2_jll ──────────────────── v2.14.4+0 Installed Tables ────────────────────── v1.12.1 Installed GeneralizedGenerated ──────── v0.3.3 Installed InverseFunctions ──────────── v0.1.17 Installed StructEquality ────────────── v2.1.0 Installed SpecialFunctions ──────────── v2.5.1 Installed Reexport ──────────────────── v1.2.2 Installed AlgebraicPetri ────────────── v0.9.2 Installed Preferences ───────────────── v1.5.0 Installed FixedPointNumbers ─────────── v0.8.5 Installed JLLWrappers ───────────────── v1.7.1 Installed TableTraits ───────────────── v1.0.1 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed LaTeXStrings ──────────────── v1.4.0 Installed Crayons ───────────────────── v4.1.1 Installed StructTypes ───────────────── v1.11.0 ┌ Warning: tarball content does not match git-tree-sha1 └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:845 Installed RecursiveArrayTools ───────── v3.37.0 Installed IterTools ─────────────────── v1.10.0 Installed DocStringExtensions ───────── v0.9.5 Installed MLStyle ───────────────────── v0.4.17 Installed Permutations ──────────────── v0.4.23 Installed Compose ───────────────────── v0.9.6 Installed Accessors ─────────────────── v0.1.42 Installed Catlab ────────────────────── v0.16.20 Cloning [227ef7b5-1206-438b-ac65-934d6da304b8] ACSets from https://github.com/AlgebraicJulia/ACSets.jl.git Installed ACSets ────────────────────── v0.2.24 Installing 3 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Libiconv 1.9 MiB Installed artifact XML2 2.5 MiB Updating `~/.julia/environments/v1.13/Project.toml` [4f99eebe] + AlgebraicPetri v0.9.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [227ef7b5] + ACSets v0.2.24 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [23cfdc9f] + AlgebraicInterfaces v0.1.4 [4f99eebe] + AlgebraicPetri v0.9.2 [4fba245c] + ArrayInterface v7.19.0 ⌅ [134e5e36] + Catlab v0.16.20 [d360d2e6] + ChainRulesCore v1.26.0 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.0.3 [bbf7d656] + CommonSubexpressions v0.3.1 [0fb5dd42] + CompTime v0.1.2 [34da2185] + Compat v4.18.0 [a81c6b42] + Compose v0.9.6 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.5 [e2ba6199] + ExprTools v0.1.10 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.0.1 ⌅ [f0ffcf3b] + GATlab v0.1.6 [46192b85] + GPUArraysCore v0.2.0 [6b9d7cbe] + GeneralizedGenerated v0.3.3 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [b14d175d] + JuliaVariables v0.2.4 [b964fa9f] + LaTeXStrings v1.4.0 [2ee39098] + LabelledArrays v1.16.1 [9c8b4983] + LightXML v0.9.2 [2ab3a3ac] + LogExpFunctions v0.3.29 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [442fdcdd] + Measures v0.3.2 [77ba4419] + NaNMath v1.1.3 [71a1bf82] + NameResolution v0.1.5 [bac558e1] + OrderedCollections v1.8.1 [12d937ae] + PEG v1.0.4 [69de0a69] + Parsers v2.8.3 [2ae35dd2] + Permutations v0.4.23 [d236fae5] + PreallocationTools v0.4.31 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.5.0 [8162dcfd] + PrettyPrint v0.2.0 [08abe8d2] + PrettyTables v2.4.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.37.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.1 [6ec83bb0] + StructEquality v2.1.0 [856f2bd8] + StructTypes v1.11.0 [2efcf032] + SymbolicIndexingInterface v0.3.43 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [94ce4f54] + Libiconv_jll v1.18.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [02c8fc9c] + XML2_jll v2.14.4+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 10.84s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4607.1 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:76 Precompiling package dependencies... ERROR: LoadError: The following 4 direct dependencies failed to precompile: ModelingToolkit Failed to precompile ModelingToolkit [961ee093-0014-501f-94e3-6117800e7a78] to "/home/pkgeval/.julia/compiled/v1.13/ModelingToolkit/jl_KEWMlX" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `StaticData` not defined in `Base` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] getproperty @ ./Base_compiler.jl:50 [inlined] [2] recompile_invalidations(__module__::Module, expr::Any) @ PrecompileTools ~/.julia/packages/PrecompileTools/Z8SWe/src/invalidations.jl:17 [3] top-level scope @ ~/.julia/packages/ModelingToolkit/EpUEk/src/ModelingToolkit.jl:6 [4] include(mod::Module, _path::String) @ Base ./Base.jl:308 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3017 [6] top-level scope @ stdin:5 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2863 [9] include_string @ ./loading.jl:2873 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [11] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/ModelingToolkit/EpUEk/src/ModelingToolkit.jl:1 in expression starting at stdin:5 Catalyst Failed to precompile Catalyst [479239e8-5488-4da2-87a7-35f2df7eef83] to "/home/pkgeval/.julia/compiled/v1.13/Catalyst/jl_y7V5EX" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `StaticData` not defined in `Base` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] getproperty @ ./Base_compiler.jl:50 [inlined] [2] recompile_invalidations(__module__::Module, expr::Any) @ PrecompileTools ~/.julia/packages/PrecompileTools/Z8SWe/src/invalidations.jl:17 [3] top-level scope @ ~/.julia/packages/StaticArrayInterface/lkDPR/src/StaticArrayInterface.jl:19 [4] include(mod::Module, _path::String) @ Base ./Base.jl:308 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3017 [6] top-level scope @ stdin:5 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2863 [9] include_string @ ./loading.jl:2873 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [11] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/StaticArrayInterface/lkDPR/src/StaticArrayInterface.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile StaticArrayInterface [0d7ed370-da01-4f52-bd93-41d350b8b718] to "/home/pkgeval/.julia/compiled/v1.13/StaticArrayInterface/jl_XvHSrg" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3304 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3182 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2669 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#233 @ ./reflection.jl:1333 [inlined] [9] invokelatest_gr @ ./reflection.jl:1325 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3875 [11] maybe_cachefile_lock @ ./loading.jl:3872 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2655 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [14] macro expansion @ ./loading.jl:2412 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2376 [17] require @ ./loading.jl:2352 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [21] top-level scope @ ~/.julia/packages/FastBroadcast/wfdTr/src/FastBroadcast.jl:7 [22] include(mod::Module, _path::String) @ Base ./Base.jl:308 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3017 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2863 [27] include_string @ ./loading.jl:2873 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [29] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/FastBroadcast/wfdTr/src/FastBroadcast.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile FastBroadcast [7034ab61-46d4-4ed7-9d0f-46aef9175898] to "/home/pkgeval/.julia/compiled/v1.13/FastBroadcast/jl_3rlZSj" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3304 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3182 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2669 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#233 @ ./reflection.jl:1333 [inlined] [9] invokelatest_gr @ ./reflection.jl:1325 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3875 [11] maybe_cachefile_lock @ ./loading.jl:3872 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2655 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [14] macro expansion @ ./loading.jl:2412 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2376 [17] require @ ./loading.jl:2352 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [21] top-level scope @ ~/.julia/packages/DiffEqBase/0oXZq/src/DiffEqBase.jl:26 [22] include(mod::Module, _path::String) @ Base ./Base.jl:308 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3017 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2863 [27] include_string @ ./loading.jl:2873 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [29] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/DiffEqBase/0oXZq/src/DiffEqBase.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] to "/home/pkgeval/.julia/compiled/v1.13/DiffEqBase/jl_YrJmIX" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3304 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3182 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2669 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#233 @ ./reflection.jl:1333 [inlined] [9] invokelatest_gr @ ./reflection.jl:1325 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3875 [11] maybe_cachefile_lock @ ./loading.jl:3872 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2655 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [14] macro expansion @ ./loading.jl:2412 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2376 [17] require @ ./loading.jl:2352 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/Catalyst/8qDWw/src/Catalyst.jl:7 [22] include(mod::Module, _path::String) @ Base ./Base.jl:308 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3017 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2863 [27] include_string @ ./loading.jl:2873 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [29] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/Catalyst/8qDWw/src/Catalyst.jl:1 in expression starting at stdin:5 OrdinaryDiffEq Failed to precompile OrdinaryDiffEq [1dea7af3-3e70-54e6-95c3-0bf5283fa5ed] to "/home/pkgeval/.julia/compiled/v1.13/OrdinaryDiffEq/jl_iB3M98" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `StaticData` not defined in `Base` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] getproperty @ ./Base_compiler.jl:50 [inlined] [2] recompile_invalidations(__module__::Module, expr::Any) @ PrecompileTools ~/.julia/packages/PrecompileTools/Z8SWe/src/invalidations.jl:17 [3] top-level scope @ ~/.julia/packages/StaticArrayInterface/lkDPR/src/StaticArrayInterface.jl:19 [4] include(mod::Module, _path::String) @ Base ./Base.jl:308 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3017 [6] top-level scope @ stdin:5 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2863 [9] include_string @ ./loading.jl:2873 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [11] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/StaticArrayInterface/lkDPR/src/StaticArrayInterface.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile StaticArrayInterface [0d7ed370-da01-4f52-bd93-41d350b8b718] to "/home/pkgeval/.julia/compiled/v1.13/StaticArrayInterface/jl_pUttA7" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3304 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3182 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2669 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#233 @ ./reflection.jl:1333 [inlined] [9] invokelatest_gr @ ./reflection.jl:1325 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3875 [11] maybe_cachefile_lock @ ./loading.jl:3872 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2655 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [14] macro expansion @ ./loading.jl:2412 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2376 [17] require @ ./loading.jl:2352 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [21] top-level scope @ ~/.julia/packages/FastBroadcast/wfdTr/src/FastBroadcast.jl:7 [22] include(mod::Module, _path::String) @ Base ./Base.jl:308 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3017 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2863 [27] include_string @ ./loading.jl:2873 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [29] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/FastBroadcast/wfdTr/src/FastBroadcast.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile FastBroadcast [7034ab61-46d4-4ed7-9d0f-46aef9175898] to "/home/pkgeval/.julia/compiled/v1.13/FastBroadcast/jl_eCjibU" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3304 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3182 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2669 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#233 @ ./reflection.jl:1333 [inlined] [9] invokelatest_gr @ ./reflection.jl:1325 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3875 [11] maybe_cachefile_lock @ ./loading.jl:3872 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2655 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [14] macro expansion @ ./loading.jl:2412 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2376 [17] require @ ./loading.jl:2352 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [21] top-level scope @ ~/.julia/packages/DiffEqBase/0oXZq/src/DiffEqBase.jl:26 [22] include(mod::Module, _path::String) @ Base ./Base.jl:308 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3017 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2863 [27] include_string @ ./loading.jl:2873 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [29] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/DiffEqBase/0oXZq/src/DiffEqBase.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] to "/home/pkgeval/.julia/compiled/v1.13/DiffEqBase/jl_vLwHa7" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3304 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3182 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2669 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#233 @ ./reflection.jl:1333 [inlined] [9] invokelatest_gr @ ./reflection.jl:1325 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3875 [11] maybe_cachefile_lock @ ./loading.jl:3872 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2655 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [14] macro expansion @ ./loading.jl:2412 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2376 [17] require @ ./loading.jl:2352 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/OrdinaryDiffEq/Hdbut/src/OrdinaryDiffEq.jl:7 [22] include(mod::Module, _path::String) @ Base ./Base.jl:308 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3017 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2863 [27] include_string @ ./loading.jl:2873 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [29] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/OrdinaryDiffEq/Hdbut/src/OrdinaryDiffEq.jl:1 in expression starting at stdin:5 MTKLabelledArraysExt Failed to precompile MTKLabelledArraysExt [67d91cba-5f36-556b-9bcb-8199bc0483c7] to "/home/pkgeval/.julia/compiled/v1.13/MTKLabelledArraysExt/jl_9qnchk" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `StaticData` not defined in `Base` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] getproperty @ ./Base_compiler.jl:50 [inlined] [2] recompile_invalidations(__module__::Module, expr::Any) @ PrecompileTools ~/.julia/packages/PrecompileTools/Z8SWe/src/invalidations.jl:17 [3] top-level scope @ ~/.julia/packages/ModelingToolkit/EpUEk/src/ModelingToolkit.jl:6 [4] include(mod::Module, _path::String) @ Base ./Base.jl:308 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3017 [6] top-level scope @ stdin:5 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2863 [9] include_string @ ./loading.jl:2873 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [11] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/ModelingToolkit/EpUEk/src/ModelingToolkit.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile ModelingToolkit [961ee093-0014-501f-94e3-6117800e7a78] to "/home/pkgeval/.julia/compiled/v1.13/ModelingToolkit/jl_ppY2xo" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3304 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3182 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2669 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#233 @ ./reflection.jl:1333 [inlined] [9] invokelatest_gr @ ./reflection.jl:1325 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3875 [11] maybe_cachefile_lock @ ./loading.jl:3872 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2655 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2484 [14] macro expansion @ ./loading.jl:2412 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2376 [17] require @ ./loading.jl:2352 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/ModelingToolkit/EpUEk/ext/MTKLabelledArraysExt.jl:3 [22] include(mod::Module, _path::String) @ Base ./Base.jl:308 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3017 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2863 [27] include_string @ ./loading.jl:2873 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [29] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/ModelingToolkit/EpUEk/ext/MTKLabelledArraysExt.jl:1 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 2212.78s ################################################################################ # Testing # Testing AlgebraicPetri Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_BB9YIp/Project.toml` ⌃ [4f99eebe] ↓ AlgebraicPetri v0.9.2 ⇒ v0.8.10 [479239e8] + Catalyst v15.0.8 ⌅ [134e5e36] ↓ Catlab v0.16.20 ⇒ v0.14.17 ⌅ [961ee093] + ModelingToolkit v9.82.0 [1dea7af3] + OrdinaryDiffEq v6.101.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_BB9YIp/Manifest.toml` [227ef7b5] - ACSets v0.2.24 [47edcb42] + ADTypes v1.17.0 [1520ce14] + AbstractTrees v0.4.5 [23cfdc9f] - AlgebraicInterfaces v0.1.4 ⌃ [4f99eebe] ↓ AlgebraicPetri v0.9.2 ⇒ v0.8.10 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4c555306] + ArrayLayouts v1.11.2 [e2ed5e7c] + Bijections v0.2.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.7.0 [70df07ce] + BracketingNonlinearSolve v1.3.0 [2a0fbf3d] + CPUSummary v0.2.7 [479239e8] + Catalyst v15.0.8 ⌅ [134e5e36] ↓ Catlab v0.16.20 ⇒ v0.14.17 [fb6a15b2] + CloseOpenIntervals v0.1.13 ⌅ [3da002f7] ↓ ColorTypes v0.12.1 ⇒ v0.11.5 ⌅ [5ae59095] ↓ Colors v0.13.1 ⇒ v0.12.11 [a80b9123] + CommonMark v0.9.1 [38540f10] + CommonSolve v0.2.4 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [b152e2b5] + CompositeTypes v0.1.4 [2569d6c7] + ConcreteStructs v0.2.3 [adafc99b] + CpuId v0.3.1 [2b5f629d] + DiffEqBase v6.183.0 [459566f4] + DiffEqCallbacks v4.9.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 ⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54 [8d63f2c5] + DispatchDoctor v0.4.26 [31c24e10] + Distributions v0.25.120 [5b8099bc] + DomainSets v0.7.16 [7c1d4256] + DynamicPolynomials v0.6.2 [06fc5a27] + DynamicQuantities v1.8.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.12 [d4d017d3] + ExponentialUtilities v1.27.0 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.0.2 [a4df4552] + FastPower v1.1.3 [1a297f60] + FillArrays v1.13.0 [64ca27bc] + FindFirstFunctions v1.4.1 [6a86dc24] + FiniteDiff v2.28.0 [1fa38f19] + Format v1.3.7 ⌅ [f6369f11] ↓ ForwardDiff v1.0.1 ⇒ v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [f0ffcf3b] - GATlab v0.1.6 [c145ed77] + GenericSchur v0.5.5 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.0 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [18e54dd8] + IntegerMathUtils v0.1.3 [8197267c] + IntervalSets v0.7.11 [0f8b85d8] - JSON3 v1.14.3 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v2.1.6 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.17.0 [ba0b0d4f] + Krylov v0.10.1 [23fbe1c1] + Latexify v0.16.9 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.6.2 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.0 [7ed4a6bd] + LinearSolve v3.30.0 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 ⌅ [961ee093] + ModelingToolkit v9.82.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.6.4 [d41bc354] + NLSolversBase v7.10.0 [8913a72c] + NonlinearSolve v4.10.0 [be0214bd] + NonlinearSolveBase v1.14.0 [5959db7a] + NonlinearSolveFirstOrder v1.7.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.8.0 [26075421] + NonlinearSolveSpectralMethods v1.3.0 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [1dea7af3] + OrdinaryDiffEq v6.101.0 [89bda076] + OrdinaryDiffEqAdamsBashforthMoulton v1.5.0 ⌃ [6ad6398a] + OrdinaryDiffEqBDF v1.9.0 [bbf590c4] + OrdinaryDiffEqCore v1.30.0 ⌃ [50262376] + OrdinaryDiffEqDefault v1.7.0 ⌃ [4302a76b] + OrdinaryDiffEqDifferentiation v1.11.0 [9286f039] + OrdinaryDiffEqExplicitRK v1.4.0 ⌃ [e0540318] + OrdinaryDiffEqExponentialRK v1.7.0 ⌃ [becaefa8] + OrdinaryDiffEqExtrapolation v1.7.0 ⌃ [5960d6e9] + OrdinaryDiffEqFIRK v1.15.0 [101fe9f7] + OrdinaryDiffEqFeagin v1.4.0 [d3585ca7] + OrdinaryDiffEqFunctionMap v1.5.0 [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.5.0 ⌃ [9f002381] + OrdinaryDiffEqIMEXMultistep v1.6.0 [521117fe] + OrdinaryDiffEqLinear v1.6.0 [1344f307] + OrdinaryDiffEqLowOrderRK v1.6.0 [b0944070] + OrdinaryDiffEqLowStorageRK v1.6.0 ⌃ [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.13.0 [c9986a66] + OrdinaryDiffEqNordsieck v1.4.0 ⌃ [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.5.0 [5b33eab2] + OrdinaryDiffEqPRK v1.4.0 [04162be5] + OrdinaryDiffEqQPRK v1.4.0 [af6ede74] + OrdinaryDiffEqRKN v1.5.0 ⌃ [43230ef6] + OrdinaryDiffEqRosenbrock v1.14.0 ⌃ [2d112036] + OrdinaryDiffEqSDIRK v1.6.0 [669c94d9] + OrdinaryDiffEqSSPRK v1.6.0 ⌃ [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.5.0 [358294b1] + OrdinaryDiffEqStabilizedRK v1.4.0 [fa646aed] + OrdinaryDiffEqSymplecticRK v1.7.0 [b1df2697] + OrdinaryDiffEqTsit5 v1.5.0 [79d7bb75] + OrdinaryDiffEqVerner v1.6.0 [90014a1f] + PDMats v0.11.35 [12d937ae] - PEG v1.0.4 [d96e819e] + Parameters v0.12.3 [2ae35dd2] - Permutations v0.4.23 [e409e4f3] + PoissonRandom v0.4.6 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.8.0 [9dfe8606] + SCCNonlinearSolve v1.4.0 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.110.0 [19f34311] + SciMLJacobianOperators v0.1.8 [c0aeaf25] + SciMLOperators v1.5.0 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.7.0 [699a6c99] + SimpleTraits v0.9.5 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [0a514795] + SparseMatrixColorings v0.4.21 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [7792a7ef] + StrideArraysCore v0.5.7 [856f2bd8] - StructTypes v1.11.0 [19f23fe9] + SymbolicLimits v0.2.2 [d1185830] + SymbolicUtils v3.31.0 [0c5d862f] + Symbolics v6.51.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [410a4b4d] + Tricks v0.1.12 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.24.0 [a7c27f48] + Unityper v0.1.6 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [f50d1b31] + Rmath_jll v0.5.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [4607b0f0] + SuiteSparse [8dfed614] ~ Test ⇒ v1.11.0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_BB9YIp/Project.toml` ⌃ [4f99eebe] AlgebraicPetri v0.8.10 [479239e8] Catalyst v15.0.8 ⌅ [134e5e36] Catlab v0.14.17 [2ee39098] LabelledArrays v1.16.1 ⌅ [961ee093] ModelingToolkit v9.82.0 [1dea7af3] OrdinaryDiffEq v6.101.0 [bd369af6] Tables v1.12.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_BB9YIp/Manifest.toml` [47edcb42] ADTypes v1.17.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 ⌃ [4f99eebe] AlgebraicPetri v0.8.10 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.19.0 [4c555306] ArrayLayouts v1.11.2 [e2ed5e7c] Bijections v0.2.2 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] BlockArrays v1.7.0 [70df07ce] BracketingNonlinearSolve v1.3.0 [2a0fbf3d] CPUSummary v0.2.7 [479239e8] Catalyst v15.0.8 ⌅ [134e5e36] Catlab v0.14.17 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 ⌅ [3da002f7] ColorTypes v0.11.5 ⌅ [5ae59095] Colors v0.12.11 [861a8166] Combinatorics v1.0.3 [a80b9123] CommonMark v0.9.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [0fb5dd42] CompTime v0.1.2 [34da2185] Compat v4.18.0 [a81c6b42] Compose v0.9.6 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [2b5f629d] DiffEqBase v6.183.0 [459566f4] DiffEqCallbacks v4.9.0 [77a26b50] DiffEqNoiseProcess v5.24.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 ⌅ [a0c0ee7d] DifferentiationInterface v0.6.54 [8d63f2c5] DispatchDoctor v0.4.26 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [5b8099bc] DomainSets v0.7.16 [7c1d4256] DynamicPolynomials v0.6.2 [06fc5a27] DynamicQuantities v1.8.0 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.12 [d4d017d3] ExponentialUtilities v1.27.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.0.2 [a4df4552] FastPower v1.1.3 [1a297f60] FillArrays v1.13.0 [64ca27bc] FindFirstFunctions v1.4.1 [6a86dc24] FiniteDiff v2.28.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 ⌅ [f6369f11] ForwardDiff v0.10.38 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [6b9d7cbe] GeneralizedGenerated v0.3.3 [c145ed77] GenericSchur v0.5.5 [c27321d9] Glob v1.3.1 [86223c79] Graphs v1.13.0 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [18e54dd8] IntegerMathUtils v0.1.3 [8197267c] IntervalSets v0.7.11 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools 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[71a1bf82] NameResolution v0.1.5 [8913a72c] NonlinearSolve v4.10.0 [be0214bd] NonlinearSolveBase v1.14.0 [5959db7a] NonlinearSolveFirstOrder v1.7.0 [9a2c21bd] NonlinearSolveQuasiNewton v1.8.0 [26075421] NonlinearSolveSpectralMethods v1.3.0 [6fe1bfb0] OffsetArrays v1.17.0 [429524aa] Optim v1.13.2 [bac558e1] OrderedCollections v1.8.1 [1dea7af3] OrdinaryDiffEq v6.101.0 [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.5.0 ⌃ [6ad6398a] OrdinaryDiffEqBDF v1.9.0 [bbf590c4] OrdinaryDiffEqCore v1.30.0 ⌃ [50262376] OrdinaryDiffEqDefault v1.7.0 ⌃ [4302a76b] OrdinaryDiffEqDifferentiation v1.11.0 [9286f039] OrdinaryDiffEqExplicitRK v1.4.0 ⌃ [e0540318] OrdinaryDiffEqExponentialRK v1.7.0 ⌃ [becaefa8] OrdinaryDiffEqExtrapolation v1.7.0 ⌃ [5960d6e9] OrdinaryDiffEqFIRK v1.15.0 [101fe9f7] OrdinaryDiffEqFeagin v1.4.0 [d3585ca7] OrdinaryDiffEqFunctionMap v1.5.0 [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.5.0 ⌃ [9f002381] OrdinaryDiffEqIMEXMultistep v1.6.0 [521117fe] OrdinaryDiffEqLinear v1.6.0 [1344f307] 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Types: Error During Test at /home/pkgeval/.julia/packages/AlgebraicPetri/WK5Qd/test/algebraicpetri/types.jl:61 Test threw exception Expression: to_graphviz(sir_petri) isa Graphics.Graphviz.Graph MethodError: no method matching to_graphviz(::AlgebraicPetri.PetriNet) The function `to_graphviz` exists, but no method is defined for this combination of argument types. Closest candidates are: to_graphviz(!Matched::Catlab.WiringDiagrams.CPortGraphs.CPortGraph; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizWiringDiagrams.jl:658 to_graphviz(!Matched::Catlab.Graphs.BasicGraphs.HasGraph; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizGraphs.jl:145 to_graphviz(!Matched::Catlab.WiringDiagrams.UndirectedWiringDiagrams.AbstractUWD; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizWiringDiagrams.jl:408 ... Stacktrace: [1] top-level scope @ ~/.julia/packages/AlgebraicPetri/WK5Qd/test/algebraicpetri/types.jl:533 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:742 [inlined] Types: Error During Test at /home/pkgeval/.julia/packages/AlgebraicPetri/WK5Qd/test/algebraicpetri/types.jl:62 Test threw exception Expression: to_graphviz(sir_lpetri) isa Graphics.Graphviz.Graph MethodError: no method matching to_graphviz(::AlgebraicPetri.LabelledPetriNet) The function `to_graphviz` exists, but no method is defined for this combination of argument types. Closest candidates are: to_graphviz(!Matched::Catlab.WiringDiagrams.CPortGraphs.CPortGraph; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizWiringDiagrams.jl:658 to_graphviz(!Matched::Catlab.Graphs.BasicGraphs.HasGraph; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizGraphs.jl:145 to_graphviz(!Matched::Catlab.WiringDiagrams.UndirectedWiringDiagrams.AbstractUWD; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizWiringDiagrams.jl:408 ... Stacktrace: [1] top-level scope @ ~/.julia/packages/AlgebraicPetri/WK5Qd/test/algebraicpetri/types.jl:533 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:742 [inlined] Types: Error During Test at /home/pkgeval/.julia/packages/AlgebraicPetri/WK5Qd/test/algebraicpetri/types.jl:63 Test threw exception Expression: to_graphviz(sir_rxn) isa Graphics.Graphviz.Graph MethodError: no method matching to_graphviz(::AlgebraicPetri.ReactionNet{Function, Int64}) The function `to_graphviz` exists, but no method is defined for this combination of argument types. Closest candidates are: to_graphviz(!Matched::Catlab.WiringDiagrams.CPortGraphs.CPortGraph; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizWiringDiagrams.jl:658 to_graphviz(!Matched::Catlab.Graphs.BasicGraphs.HasGraph; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizGraphs.jl:145 to_graphviz(!Matched::Catlab.WiringDiagrams.UndirectedWiringDiagrams.AbstractUWD; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizWiringDiagrams.jl:408 ... Stacktrace: [1] top-level scope @ ~/.julia/packages/AlgebraicPetri/WK5Qd/test/algebraicpetri/types.jl:533 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:742 [inlined] Types: Error During Test at /home/pkgeval/.julia/packages/AlgebraicPetri/WK5Qd/test/algebraicpetri/types.jl:64 Test threw exception Expression: to_graphviz(open_sir_rxn) isa Graphics.Graphviz.Graph MethodError: no method matching to_graphviz(::Catlab.CategoricalAlgebra.StructuredCospans.StructuredCospan{Catlab.CategoricalAlgebra.StructuredCospans.DiscreteACSet{Catlab.DenseACSets.AnonACSet{Catlab.Schemas.TypeLevelBasicSchema{Symbol, Tuple{:S}, Tuple{}, Tuple{:Rate, :Concentration}, Tuple{(:concentration, :S, :Concentration)}}, Tuple{Function, Int64}, Catlab.LVectors.LVector{(:S,), Int64}, @NamedTuple{concentration::Catlab.ColumnImplementations.DenseColumn{Int64, Vector{Int64}}}}, AlgebraicPetri.ReactionNet{Function, Int64}}, Catlab.CategoricalAlgebra.FreeDiagrams.Multicospan{AlgebraicPetri.ReactionNet{Function, Int64}, Catlab.CategoricalAlgebra.CSets.StructTightACSetTransformation{Catlab.Schemas.TypeLevelBasicSchema{Symbol, Tuple{:T, :S, :I, :O}, Tuple{(:it, :I, :T), (:is, :I, :S), (:ot, :O, :T), (:os, :O, :S)}, Tuple{:Rate, :Concentration}, Tuple{(:rate, :T, :Rate), (:concentration, :S, :Concentration)}}, @NamedTuple{T::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, S::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, Vector{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, I::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, O::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}}, AlgebraicPetri.ReactionNet{Function, Int64}, AlgebraicPetri.ReactionNet{Function, Int64}}, StaticArraysCore.SVector{2, Catlab.CategoricalAlgebra.CSets.StructTightACSetTransformation{Catlab.Schemas.TypeLevelBasicSchema{Symbol, Tuple{:T, :S, :I, :O}, Tuple{(:it, :I, :T), (:is, :I, :S), (:ot, :O, :T), (:os, :O, :S)}, Tuple{:Rate, :Concentration}, Tuple{(:rate, :T, :Rate), (:concentration, :S, :Concentration)}}, @NamedTuple{T::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, S::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, Vector{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, I::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, O::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}}, AlgebraicPetri.ReactionNet{Function, Int64}, AlgebraicPetri.ReactionNet{Function, Int64}}}}, StaticArraysCore.SVector{2, Catlab.DenseACSets.AnonACSet{Catlab.Schemas.TypeLevelBasicSchema{Symbol, Tuple{:S}, Tuple{}, Tuple{:Rate, :Concentration}, Tuple{(:concentration, :S, :Concentration)}}, Tuple{Function, Int64}, Catlab.LVectors.LVector{(:S,), Int64}, @NamedTuple{concentration::Catlab.ColumnImplementations.DenseColumn{Int64, Vector{Int64}}}}}}) The function `to_graphviz` exists, but no method is defined for this combination of argument types. Closest candidates are: to_graphviz(!Matched::Catlab.WiringDiagrams.CPortGraphs.CPortGraph; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizWiringDiagrams.jl:658 to_graphviz(!Matched::Catlab.Graphs.BasicGraphs.HasGraph; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizGraphs.jl:145 to_graphviz(!Matched::Catlab.WiringDiagrams.UndirectedWiringDiagrams.AbstractUWD; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizWiringDiagrams.jl:408 ... Stacktrace: [1] top-level scope @ ~/.julia/packages/AlgebraicPetri/WK5Qd/test/algebraicpetri/types.jl:533 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:742 [inlined] Types: Error During Test at /home/pkgeval/.julia/packages/AlgebraicPetri/WK5Qd/test/algebraicpetri/types.jl:65 Test threw exception Expression: to_graphviz(sir_lrxn) isa Graphics.Graphviz.Graph MethodError: no method matching to_graphviz(::AlgebraicPetri.LabelledReactionNet{Number, Int64}) The function `to_graphviz` exists, but no method is defined for this combination of argument types. Closest candidates are: to_graphviz(!Matched::Catlab.WiringDiagrams.CPortGraphs.CPortGraph; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizWiringDiagrams.jl:658 to_graphviz(!Matched::Catlab.Graphs.BasicGraphs.HasGraph; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizGraphs.jl:145 to_graphviz(!Matched::Catlab.WiringDiagrams.UndirectedWiringDiagrams.AbstractUWD; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizWiringDiagrams.jl:408 ... Stacktrace: [1] top-level scope @ ~/.julia/packages/AlgebraicPetri/WK5Qd/test/algebraicpetri/types.jl:533 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:742 [inlined] Types: Error During Test at /home/pkgeval/.julia/packages/AlgebraicPetri/WK5Qd/test/algebraicpetri/types.jl:66 Test threw exception Expression: to_graphviz(open_sir_lrxn) isa Graphics.Graphviz.Graph MethodError: no method matching to_graphviz(::Catlab.CategoricalAlgebra.StructuredCospans.StructuredCospan{Catlab.CategoricalAlgebra.StructuredCospans.DiscreteACSet{Catlab.DenseACSets.AnonACSet{Catlab.Schemas.TypeLevelBasicSchema{Symbol, Tuple{:S}, Tuple{}, Tuple{:Rate, :Concentration, :Name}, Tuple{(:concentration, :S, :Concentration), (:sname, :S, :Name)}}, Tuple{Number, Int64, Symbol}, Catlab.LVectors.LVector{(:S,), Int64}, @NamedTuple{concentration::Catlab.ColumnImplementations.DenseColumn{Int64, Vector{Int64}}, sname::Catlab.ColumnImplementations.DenseColumn{Symbol, Vector{Symbol}}}}, AlgebraicPetri.LabelledReactionNet{Number, Int64}}, Catlab.CategoricalAlgebra.FreeDiagrams.Multicospan{AlgebraicPetri.LabelledReactionNet{Number, Int64}, Catlab.CategoricalAlgebra.CSets.StructTightACSetTransformation{Catlab.Schemas.TypeLevelBasicSchema{Symbol, Tuple{:T, :S, :I, :O}, Tuple{(:it, :I, :T), (:is, :I, :S), (:ot, :O, :T), (:os, :O, :S)}, Tuple{:Rate, :Concentration, :Name}, Tuple{(:rate, :T, :Rate), (:concentration, :S, :Concentration), (:tname, :T, :Name), (:sname, :S, :Name)}}, @NamedTuple{T::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, S::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, Vector{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, I::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, O::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}}, AlgebraicPetri.LabelledReactionNet{Number, Int64}, AlgebraicPetri.LabelledReactionNet{Number, Int64}}, StaticArraysCore.SVector{2, Catlab.CategoricalAlgebra.CSets.StructTightACSetTransformation{Catlab.Schemas.TypeLevelBasicSchema{Symbol, Tuple{:T, :S, :I, :O}, Tuple{(:it, :I, :T), (:is, :I, :S), (:ot, :O, :T), (:os, :O, :S)}, Tuple{:Rate, :Concentration, :Name}, Tuple{(:rate, :T, :Rate), (:concentration, :S, :Concentration), (:tname, :T, :Name), (:sname, :S, :Name)}}, @NamedTuple{T::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, S::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, Vector{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, I::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, O::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}}, AlgebraicPetri.LabelledReactionNet{Number, Int64}, AlgebraicPetri.LabelledReactionNet{Number, Int64}}}}, StaticArraysCore.SVector{2, Catlab.DenseACSets.AnonACSet{Catlab.Schemas.TypeLevelBasicSchema{Symbol, Tuple{:S}, Tuple{}, Tuple{:Rate, :Concentration, :Name}, Tuple{(:concentration, :S, :Concentration), (:sname, :S, :Name)}}, Tuple{Number, Int64, Symbol}, Catlab.LVectors.LVector{(:S,), Int64}, @NamedTuple{concentration::Catlab.ColumnImplementations.DenseColumn{Int64, Vector{Int64}}, sname::Catlab.ColumnImplementations.DenseColumn{Symbol, Vector{Symbol}}}}}}) The function `to_graphviz` exists, but no method is defined for this combination of argument types. Closest candidates are: to_graphviz(!Matched::Catlab.WiringDiagrams.CPortGraphs.CPortGraph; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizWiringDiagrams.jl:658 to_graphviz(!Matched::Catlab.Graphs.BasicGraphs.HasGraph; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizGraphs.jl:145 to_graphviz(!Matched::Catlab.WiringDiagrams.UndirectedWiringDiagrams.AbstractUWD; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizWiringDiagrams.jl:408 ... Stacktrace: [1] top-level scope @ ~/.julia/packages/AlgebraicPetri/WK5Qd/test/algebraicpetri/types.jl:533 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:742 [inlined] Petri: Error During Test at /home/pkgeval/.julia/packages/AlgebraicPetri/WK5Qd/test/algebraicpetri/petri.jl:47 Test threw exception Expression: to_graphviz(death_petri) isa Graphics.Graphviz.Graph MethodError: no method matching to_graphviz(::Catlab.CategoricalAlgebra.StructuredCospans.StructuredMulticospan{Catlab.CategoricalAlgebra.StructuredCospans.FinSetDiscreteACSet{:S, AlgebraicPetri.PetriNet}, Catlab.CategoricalAlgebra.FreeDiagrams.SMulticospan{1, AlgebraicPetri.PetriNet, Catlab.CategoricalAlgebra.CSets.CSetTransformation{Catlab.Schemas.TypeLevelBasicSchema{Symbol, Tuple{:T, :S, :I, :O}, Tuple{(:it, :I, :T), (:is, :I, :S), (:ot, :O, :T), (:os, :O, :S)}, Tuple{}, Tuple{}}, @NamedTuple{T::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, S::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, Vector{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, I::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, O::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}}, AlgebraicPetri.PetriNet, AlgebraicPetri.PetriNet}, StaticArraysCore.SVector{1, Catlab.CategoricalAlgebra.CSets.CSetTransformation{Catlab.Schemas.TypeLevelBasicSchema{Symbol, Tuple{:T, :S, :I, :O}, Tuple{(:it, :I, :T), (:is, :I, :S), (:ot, :O, :T), (:os, :O, :S)}, Tuple{}, Tuple{}}, @NamedTuple{T::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, S::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, Vector{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, I::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}, O::Catlab.CategoricalAlgebra.FinSets.FinDomFunctionVector{Int64, UnitRange{Int64}, Catlab.CategoricalAlgebra.FinSets.FinSetInt}}, AlgebraicPetri.PetriNet, AlgebraicPetri.PetriNet}}}, StaticArraysCore.SVector{1, Catlab.CategoricalAlgebra.FinSets.FinSetInt}}) The function `to_graphviz` exists, but no method is defined for this combination of argument types. Closest candidates are: to_graphviz(!Matched::Catlab.WiringDiagrams.CPortGraphs.CPortGraph; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizWiringDiagrams.jl:658 to_graphviz(!Matched::Catlab.Graphs.BasicGraphs.HasGraph; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizGraphs.jl:145 to_graphviz(!Matched::Catlab.WiringDiagrams.UndirectedWiringDiagrams.AbstractUWD; kw...) @ Catlab ~/.julia/packages/Catlab/NhhmR/src/graphics/GraphvizWiringDiagrams.jl:408 ... Stacktrace: [1] top-level scope @ ~/.julia/packages/AlgebraicPetri/WK5Qd/test/algebraicpetri/petri.jl:533 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:742 [inlined] Petri: Test Failed at /home/pkgeval/.julia/packages/AlgebraicPetri/WK5Qd/test/algebraicpetri/petri.jl:61 Expression: (((g2.stmts[1]).stmts[1]).stmts[1]).name == "1_n1_2" Evaluated: "1_s1_2" == "1_n1_2" Stacktrace: [1] top-level scope @ ~/.julia/packages/AlgebraicPetri/WK5Qd/test/algebraicpetri/petri.jl:533 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:745 [inlined] [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:309 [4] top-level scope @ ~/.julia/packages/AlgebraicPetri/WK5Qd/test/algebraicpetri/AlgebraicPetri.jl:12 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [6] macro expansion @ ~/.julia/packages/AlgebraicPetri/WK5Qd/test/algebraicpetri/AlgebraicPetri.jl:12 [inlined] Test Summary: | Pass Fail Error Total Time AlgebraicPetri | 99 1 7 107 5m15.1s Core | 8 8 49.9s Types | 78 6 84 3m38.3s Petri | 13 1 1 15 46.7s RNG of the outermost testset: Random.Xoshiro(0xf3cfdfb86a86b56e, 0xb4ec4c611a8f86c9, 0x6f8a5f9572cad499, 0x3e076b7c0882e828, 0xf27c932b33bfc9de) ERROR: LoadError: Some tests did not pass: 99 passed, 1 failed, 7 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/AlgebraicPetri/WK5Qd/test/runtests.jl:3 Testing failed after 335.79s ERROR: LoadError: Package AlgebraicPetri errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2672 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2521 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:308 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:330 [14] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 2629.5s: package fails to precompile