Package evaluation of ROMEO on Julia 1.13.0-DEV.974 (7bbb213719*) started at 2025-08-12T23:06:38.828 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.85s ################################################################################ # Installation # Installing ROMEO... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [1ea8258b] + ROMEO v1.3.3 Updating `~/.julia/environments/v1.13/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.0 [ffbed154] + DocStringExtensions v0.9.5 [92d709cd] + IrrationalConstants v0.2.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [43287f4e] + PtrArrays v1.3.0 [1ea8258b] + ROMEO v1.3.3 [a2af1166] + SortingAlgorithms v1.2.2 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [56f22d72] + Artifacts v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Installation completed after 3.78s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:76 Precompiling package dependencies... Precompilation completed after 117.53s ################################################################################ # Testing # Testing ROMEO Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_XxTQ1z/Project.toml` [c7e460c6] + ArgParse v1.2.0 [6e4b80f9] + BenchmarkTools v1.6.0 [557dad86] + MriResearchTools v3.3.3 [1ea8258b] + ROMEO v1.3.3 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_XxTQ1z/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [c7e460c6] + ArgParse v1.2.0 [4fba245c] + ArrayInterface v7.19.0 [13072b0f] + AxisAlgorithms v1.1.0 [6e4b80f9] + BenchmarkTools v1.6.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] + CPUSummary v0.2.7 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.0 [adafc99b] + CpuId v0.3.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [ffbed154] + DocStringExtensions v0.9.5 [bd0ea217] + EasyRanges v0.1.4 [7a1cc6ca] + FFTW v1.9.0 [53c48c17] + FixedPointNumbers v0.8.5 [3e5b6fbb] + HostCPUFeatures v0.1.17 [615f187c] + IfElse v0.1.1 [a09fc81d] + ImageCore v0.10.5 [787d08f9] + ImageMorphology v0.4.6 ⌅ [a98d9a8b] + Interpolations v0.15.1 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v0.21.4 [10f19ff3] + LayoutPointers v0.1.17 [085fde7c] + LocalFilters v2.1.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.172 [d125e4d3] + ManualMemory v0.1.8 [dbb5928d] + MappedArrays v0.4.2 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [557dad86] + MriResearchTools v3.3.3 [a3a9e032] + NIfTI v0.6.1 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [5432bcbf] + PaddedViews v0.5.12 [69de0a69] + Parsers v2.8.3 [1d0040c9] + PolyesterWeave v0.2.2 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1ea8258b] + ROMEO v1.3.3 [c84ed2f1] + Ratios v0.4.5 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [a2af1166] + SortingAlgorithms v1.2.2 [cae243ae] + StackViews v0.1.2 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [2e8cd123] + StructuredArrays v0.2.22 [62fd8b95] + TensorCore v0.1.1 [b718987f] + TextWrap v1.0.2 [8290d209] + ThreadingUtilities v0.5.5 [06e1c1a7] + TiledIteration v0.5.0 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [c3b1956e] + TypeUtils v1.10.0 [3a884ed6] + UnPack v1.0.2 [3d5dd08c] + VectorizationBase v0.21.71 [efce3f68] + WoodburyMatrices v1.0.0 [f5851436] + FFTW_jll v3.3.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_XxTQ1z/Project.toml` [c7e460c6] ArgParse v1.2.0 [6e4b80f9] BenchmarkTools v1.6.0 [557dad86] MriResearchTools v3.3.3 [1ea8258b] ROMEO v1.3.3 [8dfed614] Test v1.11.0 Status `/tmp/jl_XxTQ1z/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [c7e460c6] ArgParse v1.2.0 [4fba245c] ArrayInterface v7.19.0 [13072b0f] AxisAlgorithms v1.1.0 [6e4b80f9] BenchmarkTools v1.6.0 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] CPUSummary v0.2.7 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.0 [adafc99b] CpuId v0.3.1 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [ffbed154] DocStringExtensions v0.9.5 [bd0ea217] EasyRanges v0.1.4 [7a1cc6ca] FFTW v1.9.0 [53c48c17] FixedPointNumbers v0.8.5 [3e5b6fbb] HostCPUFeatures v0.1.17 [615f187c] IfElse v0.1.1 [a09fc81d] ImageCore v0.10.5 [787d08f9] ImageMorphology v0.4.6 ⌅ [a98d9a8b] Interpolations v0.15.1 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [10f19ff3] LayoutPointers v0.1.17 [085fde7c] LocalFilters v2.1.0 [2ab3a3ac] LogExpFunctions v0.3.29 [bdcacae8] LoopVectorization v0.12.172 [d125e4d3] ManualMemory v0.1.8 [dbb5928d] MappedArrays v0.4.2 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 [557dad86] MriResearchTools v3.3.3 [a3a9e032] NIfTI v0.6.1 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [5432bcbf] PaddedViews v0.5.12 [69de0a69] Parsers v2.8.3 [1d0040c9] PolyesterWeave v0.2.2 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [1ea8258b] ROMEO v1.3.3 [c84ed2f1] Ratios v0.4.5 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.43 [a2af1166] SortingAlgorithms v1.2.2 [cae243ae] StackViews v0.1.2 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.14 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [2e8cd123] StructuredArrays v0.2.22 [62fd8b95] TensorCore v0.1.1 [b718987f] TextWrap v1.0.2 [8290d209] ThreadingUtilities v0.5.5 [06e1c1a7] TiledIteration v0.5.0 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 [c3b1956e] TypeUtils v1.10.0 [3a884ed6] UnPack v1.0.2 [3d5dd08c] VectorizationBase v0.21.71 [efce3f68] WoodburyMatrices v1.0.0 [f5851436] FFTW_jll v3.3.11+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [856f044c] MKL_jll v2025.2.0+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time ROMEO.jl | 192 192 2m54.3s ┌ Warning: robustmask was chosen but no magnitude is available. No mask is used! └ @ RomeoApp ~/.julia/packages/ROMEO/IpWcW/ext/RomeoApp/caller.jl:63 ┌ Warning: robustmask was chosen but no magnitude is available. No mask is used! └ @ RomeoApp ~/.julia/packages/ROMEO/IpWcW/ext/RomeoApp/caller.jl:63 ┌ Warning: B0 frequency estimation without magnitude might result in poor handling of noise in later echoes! └ @ RomeoApp ~/.julia/packages/ROMEO/IpWcW/ext/RomeoApp/caller.jl:241 ┌ Warning: B0 frequency estimation without magnitude might result in poor handling of noise in later echoes! └ @ RomeoApp ~/.julia/packages/ROMEO/IpWcW/ext/RomeoApp/caller.jl:241 ┌ Warning: B0 frequency estimation without magnitude might result in poor handling of noise in later echoes! └ @ RomeoApp ~/.julia/packages/ROMEO/IpWcW/ext/RomeoApp/caller.jl:241 ┌ Warning: B0 frequency estimation without magnitude might result in poor handling of noise in later echoes! └ @ RomeoApp ~/.julia/packages/ROMEO/IpWcW/ext/RomeoApp/caller.jl:241 ┌ Warning: B0 frequency estimation without magnitude might result in poor handling of noise in later echoes! └ @ RomeoApp ~/.julia/packages/ROMEO/IpWcW/ext/RomeoApp/caller.jl:241 ┌ Warning: B0 frequency estimation without magnitude might result in poor handling of noise in later echoes! └ @ RomeoApp ~/.julia/packages/ROMEO/IpWcW/ext/RomeoApp/caller.jl:241 ┌ Warning: B0 frequency estimation without magnitude might result in poor handling of noise in later echoes! └ @ RomeoApp ~/.julia/packages/ROMEO/IpWcW/ext/RomeoApp/caller.jl:241 Phase loaded! Echoes are 1:3 Phase loaded! Phase offset correction with MCPC-3D-S turned off (only one echo) Echoes are 1 TEs are 1 Phase loaded! Phase offset correction with MCPC-3D-S turned off (only one echo) Echoes are 1 TEs are 1 Phase loaded! Phase offset correction with MCPC-3D-S set to monopolar Echoes are [1, 2] TEs are [1, 2] Phase loaded! Phase loaded! Phase loaded! Echoes are [1, 2] TEs are [1, 2, 3, 4, 5] Phase loaded! Mag loaded! Echoes are 1:3 TEs are [1, 2, 3] Phase loaded! Mag loaded! Phase offset correction with MCPC-3D-S turned off (only one echo) Echoes are 1 TEs are 1 Calculate robustmask from magnitude, saved as mask.nii individual unwrapping is false echo 1 used as template perform unwrapping... unwrapping finished! Test Summary: | Pass Total Time RomeoApp | 578 578 5m46.7s App 4.5 Testing ROMEO tests passed Testing completed after 535.5s PkgEval succeeded after 688.46s