Package evaluation of PhyloGaussianBeliefProp on Julia 1.13.0-DEV.974 (7bbb213719*) started at 2025-08-12T22:54:44.605 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.02s ################################################################################ # Installation # Installing PhyloGaussianBeliefProp... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [e3084505] + PhyloGaussianBeliefProp v0.0.1 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.16.0 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.19.0 [67c07d97] + Automa v1.1.0 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.5.0 [3c28c6f8] + BioSymbols v5.2.0 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [861a8166] + Combinatorics v1.0.3 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.0 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.4 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions 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available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.83s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 160.03s ################################################################################ # Testing # Testing PhyloGaussianBeliefProp Status `/tmp/jl_SnGj6W/Project.toml` [a93c6f00] DataFrames v1.7.0 ⌅ [864edb3b] DataStructures v0.18.22 [31c24e10] Distributions v0.25.120 ⌅ [f6369f11] ForwardDiff v0.10.38 [86223c79] Graphs v1.13.0 [fa8bd995] MetaGraphsNext v0.7.3 [429524aa] Optim v1.13.2 [90014a1f] PDMats v0.11.35 [e3084505] PhyloGaussianBeliefProp v0.0.1 ⌅ [33ad39ac] PhyloNetworks v0.16.4 [d236fae5] PreallocationTools v0.4.31 [90137ffa] StaticArrays v1.9.14 [4c63d2b9] StatsFuns v1.5.0 [bd369af6] Tables v1.12.1 [37e2e46d] LinearAlgebra v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_SnGj6W/Manifest.toml` [47edcb42] ADTypes v1.16.0 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.19.0 [67c07d97] Automa v1.1.0 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.5.0 [3c28c6f8] BioSymbols 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Testing Running tests... degenerate hybrid: complex case: Test Failed at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:56 Expression: [PGBP.nodelabels(be) for be = b] == beliefnodelabels Evaluated: StaticArraysCore.SArray{S, Int8, 1} where S<:Tuple[[3, 2], [4, 2, 1], [5, 4, 2], [6, 5], [8, 6], [7, 6], [9, 4], [2], [4, 2], [4], [5], [6], [6]] == [[6, 5], [7, 6], [8, 6], [5, 4, 2], [4, 2, 1], [3, 2], [9, 4], [6], [6], [5], [4, 2], [2], [4]] Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:38 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:56 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:745 [inlined] degenerate hybrid: complex case: Test Failed at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:57 Expression: PGBP.inscope(b[5]) == trues(2, 3) Evaluated: Bool[0 1; 0 1] == Bool[1 1 1; 1 1 1] Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:38 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:57 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:745 [inlined] degenerate hybrid: complex case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:58 Test threw exception Expression: isempty(PGBP.scopeindex([5], b[1])) some label is not in the belief's node labels Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] scopeindex(node_labels::Vector{Int64}, belief::PhyloGaussianBeliefProp.Belief{Float64, StaticArraysCore.SVector{2, Int8}, StaticArraysCore.MMatrix{2, 2, Float64, 4}, StaticArraysCore.MVector{2, Float64}, Symbol}) @ PhyloGaussianBeliefProp ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/src/beliefs.jl:170 [3] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:38 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [7] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:58 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:742 [inlined] degenerate hybrid: complex case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:59 Test threw exception Expression: PGBP.scopeindex([6], b[1]) == [1, 2] some label is not in the belief's node labels Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] scopeindex(node_labels::Vector{Int64}, belief::PhyloGaussianBeliefProp.Belief{Float64, StaticArraysCore.SVector{2, Int8}, StaticArraysCore.MMatrix{2, 2, Float64, 4}, StaticArraysCore.MVector{2, Float64}, Symbol}) @ PhyloGaussianBeliefProp ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/src/beliefs.jl:170 [3] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:38 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [7] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:59 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:742 [inlined] degenerate hybrid: complex case: Test Failed at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:60 Expression: PGBP.scopeindex([2], b[1]) Expected: ErrorException No exception thrown Stacktrace: [1] do_test_throws(result::Test.ExecutionResult, orig_expr::Any, extype::Any) @ Test /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:902 [2] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [4] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:38 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [6] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:60 [inlined] degenerate hybrid: complex case: Test Failed at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:62 Expression: [PGBP.nodelabels(be) for be = b] == beliefnodelabels Evaluated: StaticArraysCore.SArray{S, Int8, 1} where S<:Tuple[[3, 2], [4, 2, 1], [5, 4, 2], [6, 5], [8, 6], [7, 6], [9, 4], [2], [4, 2], [4], [5], [6], [6]] == [[6, 5], [7, 6], [8, 6], [5, 4, 2], [4, 2, 1], [3, 2], [9, 4], [6], [6], [5], [4, 2], [2], [4]] Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:38 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:62 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:745 [inlined] degenerate hybrid: complex case: Test Failed at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:63 Expression: PGBP.inscope(b[5]) == [true true false; true true false] Evaluated: Bool[0 1; 0 1] == Bool[1 1 0; 1 1 0] Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:38 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:63 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:745 [inlined] non-degenerate hybrid: simpler case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:79 Test threw exception Expression: (b[1]).J ≈ (m.J / (net.edge[4]).length) .* [1 -1; -1 1] DimensionMismatch: Sizes (Size(1, 1), (2, 2)) of input arrays do not match Stacktrace: [1] _throw_size_mismatch(::StaticArraysCore.MMatrix{1, 1, Float64, 1}, ::Vararg{Any}) @ StaticArrays ~/.julia/packages/StaticArrays/MTYJP/src/traits.jl:117 [2] same_size @ ~/.julia/packages/StaticArrays/MTYJP/src/traits.jl:111 [inlined] [3] macro expansion @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:76 [inlined] [4] _map @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:42 [inlined] [5] map @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:33 [inlined] [6] - @ ~/.julia/packages/StaticArrays/MTYJP/src/linalg.jl:18 [inlined] [7] isapprox(x::StaticArraysCore.MMatrix{1, 1, Float64, 1}, y::Matrix{Float64}; atol::Int64, rtol::Float64, nans::Bool, norm::typeof(norm)) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/generic.jl:2007 [8] isapprox(x::StaticArraysCore.MMatrix{1, 1, Float64, 1}, y::Matrix{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/generic.jl:2003 [9] eval_test_comparison(comparison::Expr, quoted::Expr, source::LineNumberNode, negate::Bool) @ Test /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:369 [10] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [12] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [14] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:79 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:742 [inlined] non-degenerate hybrid: simpler case: Test Failed at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:80 Expression: (b[1]).h == [0, 0] Evaluated: [-5.0] == [0, 0] Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:80 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:745 [inlined] non-degenerate hybrid: simpler case: Test Failed at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:81 Expression: (b[1]).g[1] ≈ -(log((2π) * (net.edge[4]).length * m.σ2)) / 2 Evaluated: -2.6142195769876224 ≈ -1.0100993116016501 Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:81 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:745 [inlined] non-degenerate hybrid: simpler case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:83 Test threw exception Expression: (b[2]).J ≈ bp .* [1;;] DimensionMismatch: Sizes (Size(2, 2), (1, 1)) of input arrays do not match Stacktrace: [1] _throw_size_mismatch(::StaticArraysCore.MMatrix{2, 2, Float64, 4}, ::Vararg{Any}) @ StaticArrays ~/.julia/packages/StaticArrays/MTYJP/src/traits.jl:117 [2] same_size @ ~/.julia/packages/StaticArrays/MTYJP/src/traits.jl:111 [inlined] [3] macro expansion @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:76 [inlined] [4] _map @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:42 [inlined] [5] map @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:33 [inlined] [6] - @ ~/.julia/packages/StaticArrays/MTYJP/src/linalg.jl:18 [inlined] [7] isapprox(x::StaticArraysCore.MMatrix{2, 2, Float64, 4}, y::Matrix{Float64}; atol::Int64, rtol::Float64, nans::Bool, norm::typeof(norm)) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/generic.jl:2007 [8] isapprox(x::StaticArraysCore.MMatrix{2, 2, Float64, 4}, y::Matrix{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/generic.jl:2003 [9] eval_test_comparison(comparison::Expr, quoted::Expr, source::LineNumberNode, negate::Bool) @ Test /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:369 [10] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [12] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [14] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:83 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:742 [inlined] non-degenerate hybrid: simpler case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:84 Test threw exception Expression: (b[2]).h ≈ bp * [tbl_y.y[3]] DimensionMismatch: Sizes (Size(2,), (1,)) of input arrays do not match Stacktrace: [1] _throw_size_mismatch(::StaticArraysCore.MVector{2, Float64}, ::Vararg{Any}) @ StaticArrays ~/.julia/packages/StaticArrays/MTYJP/src/traits.jl:117 [2] same_size @ ~/.julia/packages/StaticArrays/MTYJP/src/traits.jl:111 [inlined] [3] macro expansion @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:76 [inlined] [4] _map @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:42 [inlined] [5] map @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:33 [inlined] [6] - @ ~/.julia/packages/StaticArrays/MTYJP/src/linalg.jl:18 [inlined] [7] isapprox(x::StaticArraysCore.MVector{2, Float64}, y::Vector{Float64}; atol::Int64, rtol::Float64, nans::Bool, norm::typeof(norm)) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/generic.jl:2007 [8] isapprox(x::StaticArraysCore.MVector{2, Float64}, y::Vector{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/generic.jl:2003 [9] eval_test_comparison(comparison::Expr, quoted::Expr, source::LineNumberNode, negate::Bool) @ Test /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:369 [10] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [12] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [14] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:84 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:742 [inlined] non-degenerate hybrid: simpler case: Test Failed at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:85 Expression: (b[2]).g[1] ≈ -((log((2π) / bp) + bp * tbl_y.y[3] ^ 2)) / 2 Evaluated: -8.934450656689318 ≈ -1.5155121234846454 Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:85 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:745 [inlined] non-degenerate hybrid: simpler case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:87 Test threw exception Expression: (b[3]).J ≈ bp .* [1;;] DimensionMismatch: Sizes (Size(3, 3), (1, 1)) of input arrays do not match Stacktrace: [1] _throw_size_mismatch(::StaticArraysCore.MMatrix{3, 3, Float64, 9}, ::Vararg{Any}) @ StaticArrays ~/.julia/packages/StaticArrays/MTYJP/src/traits.jl:117 [2] same_size @ ~/.julia/packages/StaticArrays/MTYJP/src/traits.jl:111 [inlined] [3] macro expansion @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:76 [inlined] [4] _map @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:42 [inlined] [5] map @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:33 [inlined] [6] - @ ~/.julia/packages/StaticArrays/MTYJP/src/linalg.jl:18 [inlined] [7] isapprox(x::StaticArraysCore.MMatrix{3, 3, Float64, 9}, y::Matrix{Float64}; atol::Int64, rtol::Float64, nans::Bool, norm::typeof(norm)) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/generic.jl:2007 [8] isapprox(x::StaticArraysCore.MMatrix{3, 3, Float64, 9}, y::Matrix{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/generic.jl:2003 [9] eval_test_comparison(comparison::Expr, quoted::Expr, source::LineNumberNode, negate::Bool) @ Test /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:369 [10] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [12] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [14] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:87 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:742 [inlined] non-degenerate hybrid: simpler case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:88 Test threw exception Expression: (b[3]).h ≈ bp * [tbl_y.y[2]] DimensionMismatch: Sizes (Size(3,), (1,)) of input arrays do not match Stacktrace: [1] _throw_size_mismatch(::StaticArraysCore.MVector{3, Float64}, ::Vararg{Any}) @ StaticArrays ~/.julia/packages/StaticArrays/MTYJP/src/traits.jl:117 [2] same_size @ ~/.julia/packages/StaticArrays/MTYJP/src/traits.jl:111 [inlined] [3] macro expansion @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:76 [inlined] [4] _map @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:42 [inlined] [5] map @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:33 [inlined] [6] - @ ~/.julia/packages/StaticArrays/MTYJP/src/linalg.jl:18 [inlined] [7] isapprox(x::StaticArraysCore.MVector{3, Float64}, y::Vector{Float64}; atol::Int64, rtol::Float64, nans::Bool, norm::typeof(norm)) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/generic.jl:2007 [8] isapprox(x::StaticArraysCore.MVector{3, Float64}, y::Vector{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/generic.jl:2003 [9] eval_test_comparison(comparison::Expr, quoted::Expr, source::LineNumberNode, negate::Bool) @ Test /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:369 [10] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [12] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [14] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:88 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:742 [inlined] non-degenerate hybrid: simpler case: Test Failed at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:89 Expression: (b[3]).g[1] ≈ -((log((2π) / bp) + bp * tbl_y.y[2] ^ 2)) / 2 Evaluated: -1.218905932623556 ≈ -1.4680121234846455 Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:89 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:745 [inlined] non-degenerate hybrid: simpler case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:91 Test threw exception Expression: (b[4]).J ≈ bp .* [1 -0.9 -0.1; -0.9 0.81 0.09; -0.1 0.09 0.01] DimensionMismatch: Sizes (Size(2, 2), (3, 3)) of input arrays do not match Stacktrace: [1] _throw_size_mismatch(::StaticArraysCore.MMatrix{2, 2, Float64, 4}, ::Vararg{Any}) @ StaticArrays ~/.julia/packages/StaticArrays/MTYJP/src/traits.jl:117 [2] same_size @ ~/.julia/packages/StaticArrays/MTYJP/src/traits.jl:111 [inlined] [3] macro expansion @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:76 [inlined] [4] _map @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:42 [inlined] [5] map @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:33 [inlined] [6] - @ ~/.julia/packages/StaticArrays/MTYJP/src/linalg.jl:18 [inlined] [7] isapprox(x::StaticArraysCore.MMatrix{2, 2, Float64, 4}, y::Matrix{Float64}; atol::Int64, rtol::Float64, nans::Bool, norm::typeof(norm)) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/generic.jl:2007 [8] isapprox(x::StaticArraysCore.MMatrix{2, 2, Float64, 4}, y::Matrix{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/generic.jl:2003 [9] eval_test_comparison(comparison::Expr, quoted::Expr, source::LineNumberNode, negate::Bool) @ Test /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:369 [10] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [12] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [14] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:91 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:742 [inlined] non-degenerate hybrid: simpler case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:92 Test threw exception Expression: (b[4]).h ≈ [0, 0, 0] DimensionMismatch: Sizes (Size(2,), (3,)) of input arrays do not match Stacktrace: [1] _throw_size_mismatch(::StaticArraysCore.MVector{2, Float64}, ::Vararg{Any}) @ StaticArrays ~/.julia/packages/StaticArrays/MTYJP/src/traits.jl:117 [2] same_size @ ~/.julia/packages/StaticArrays/MTYJP/src/traits.jl:111 [inlined] [3] macro expansion @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:76 [inlined] [4] _map @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:42 [inlined] [5] map @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:33 [inlined] [6] - @ ~/.julia/packages/StaticArrays/MTYJP/src/linalg.jl:18 [inlined] [7] isapprox(x::StaticArraysCore.MVector{2, Float64}, y::Vector{Int64}; atol::Int64, rtol::Float64, nans::Bool, norm::typeof(norm)) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/generic.jl:2007 [8] isapprox(x::StaticArraysCore.MVector{2, Float64}, y::Vector{Int64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/generic.jl:2003 [9] eval_test_comparison(comparison::Expr, quoted::Expr, source::LineNumberNode, negate::Bool) @ Test /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:369 [10] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [12] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [14] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:92 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:742 [inlined] non-degenerate hybrid: simpler case: Test Failed at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:93 Expression: (b[4]).g[1] ≈ -(log((2π) / bp)) / 2 Evaluated: -1.0100993116016501 ≈ -1.218905932623556 Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:93 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:745 [inlined] non-degenerate hybrid: simpler case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:96 Test threw exception Expression: (b[5]).J ≈ [bp[1] 0; 0 bp[2]] DimensionMismatch: Sizes (Size(1, 1), (2, 2)) of input arrays do not match Stacktrace: [1] _throw_size_mismatch(::StaticArraysCore.MMatrix{1, 1, Float64, 1}, ::Vararg{Any}) @ StaticArrays ~/.julia/packages/StaticArrays/MTYJP/src/traits.jl:117 [2] same_size @ ~/.julia/packages/StaticArrays/MTYJP/src/traits.jl:111 [inlined] [3] macro expansion @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:76 [inlined] [4] _map @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:42 [inlined] [5] map @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:33 [inlined] [6] - @ ~/.julia/packages/StaticArrays/MTYJP/src/linalg.jl:18 [inlined] [7] isapprox(x::StaticArraysCore.MMatrix{1, 1, Float64, 1}, y::Matrix{Float64}; atol::Int64, rtol::Float64, nans::Bool, norm::typeof(norm)) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/generic.jl:2007 [8] isapprox(x::StaticArraysCore.MMatrix{1, 1, Float64, 1}, y::Matrix{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/generic.jl:2003 [9] eval_test_comparison(comparison::Expr, quoted::Expr, source::LineNumberNode, negate::Bool) @ Test /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:369 [10] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [12] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [14] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:96 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:742 [inlined] non-degenerate hybrid: simpler case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:97 Test threw exception Expression: (b[5]).h ≈ bp .* [m.μ, m.μ] DimensionMismatch: Sizes (Size(1,), (2,)) of input arrays do not match Stacktrace: [1] _throw_size_mismatch(::StaticArraysCore.MVector{1, Float64}, ::Vararg{Any}) @ StaticArrays ~/.julia/packages/StaticArrays/MTYJP/src/traits.jl:117 [2] same_size @ ~/.julia/packages/StaticArrays/MTYJP/src/traits.jl:111 [inlined] [3] macro expansion @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:76 [inlined] [4] _map @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:42 [inlined] [5] map @ ~/.julia/packages/StaticArrays/MTYJP/src/mapreduce.jl:33 [inlined] [6] - @ ~/.julia/packages/StaticArrays/MTYJP/src/linalg.jl:18 [inlined] [7] isapprox(x::StaticArraysCore.MVector{1, Float64}, y::Vector{Float64}; atol::Int64, rtol::Float64, nans::Bool, norm::typeof(norm)) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/generic.jl:2007 [8] isapprox(x::StaticArraysCore.MVector{1, Float64}, y::Vector{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/generic.jl:2003 [9] eval_test_comparison(comparison::Expr, quoted::Expr, source::LineNumberNode, negate::Bool) @ Test /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:369 [10] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [12] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [14] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:97 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:742 [inlined] non-degenerate hybrid: simpler case: Test Failed at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:98 Expression: (b[5]).g[1] ≈ -(sum(log.((2π) ./ bp) .+ bp .* m.μ ^ 2)) / 2 Evaluated: -1.4680121234846455 ≈ -8.934450656689318 Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:98 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:745 [inlined] non-degenerate hybrid: simpler case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:67 Got exception outside of a @test MethodError: no method matching isless(::Int64, ::Nothing) The function `isless` exists, but no method is defined for this combination of argument types. Closest candidates are: isless(!Matched::Missing, ::Any) @ Base missing.jl:87 isless(::Integer, !Matched::NLopt.Result) @ NLopt ~/.julia/packages/NLopt/wMgqN/src/NLopt.jl:150 isless(::Integer, !Matched::ForwardDiff.Dual{Ty}) where Ty @ ForwardDiff ~/.julia/packages/ForwardDiff/UBbGT/src/dual.jl:149 ... Stacktrace: [1] lt(o::Base.Order.ForwardOrdering, a::Int64, b::Nothing) @ Base.Order ./ordering.jl:118 [2] issorted(itr::StaticArraysCore.SizedVector{2, Union{Nothing, Int64}, Vector{Union{Nothing, Int64}}}, order::Base.Order.ForwardOrdering) @ Base.Sort ./sort.jl:57 [3] #issorted#1 @ ./sort.jl:95 [inlined] [4] issorted @ ./sort.jl:88 [inlined] [5] scopeindex(subset_labels::StaticArraysCore.SVector{2, Int8}, subset_inscope::BitMatrix, belief_labels::StaticArraysCore.SVector{2, Int8}, belief_inscope::BitMatrix) @ PhyloGaussianBeliefProp ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/src/beliefs.jl:204 [6] scopeindex(sep::PhyloGaussianBeliefProp.Belief{Float64, StaticArraysCore.SVector{2, Int8}, StaticArraysCore.MMatrix{2, 2, Float64, 4}, StaticArraysCore.MVector{2, Float64}, Tuple{Symbol, Symbol}}, clu::PhyloGaussianBeliefProp.Belief{Float64, StaticArraysCore.SVector{2, Int8}, StaticArraysCore.MMatrix{1, 1, Float64, 1}, StaticArraysCore.MVector{1, Float64}, Symbol}) @ PhyloGaussianBeliefProp ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/src/beliefs.jl:199 [7] propagate_belief!(cluster_to::PhyloGaussianBeliefProp.Belief{Float64, StaticArraysCore.SVector{2, Int8}, StaticArraysCore.MMatrix{1, 1, Float64, 1}, StaticArraysCore.MVector{1, Float64}, Symbol}, sepset::PhyloGaussianBeliefProp.Belief{Float64, StaticArraysCore.SVector{2, Int8}, StaticArraysCore.MMatrix{2, 2, Float64, 4}, StaticArraysCore.MVector{2, Float64}, Tuple{Symbol, Symbol}}, cluster_from::PhyloGaussianBeliefProp.Belief{Float64, StaticArraysCore.SVector{3, Int8}, StaticArraysCore.MMatrix{3, 3, Float64, 9}, StaticArraysCore.MVector{3, Float64}, Symbol}, residual::PhyloGaussianBeliefProp.MessageResidual{Float64, StaticArraysCore.MMatrix{2, 2, Float64, 4}, StaticArraysCore.MVector{2, Float64}}) @ PhyloGaussianBeliefProp ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/src/beliefupdates.jl:212 [8] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [10] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [12] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:102 [inlined] [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [14] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/runtests.jl:14 [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [16] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/runtests.jl:16 [inlined] [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [18] top-level scope @ none:6 [19] eval(m::Module, e::Any) @ Core ./boot.jl:489 [20] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [21] _start() @ Base ./client.jl:553 Test Summary: | Pass Fail Error Total Time PhyloGaussianBeliefProp.jl | 555 11 12 578 12m29.3s cluster graphs | 42 42 1m12.3s evolutionary models parameters | 24 24 13.6s evolutionary models likelihood | 13 13 6m29.6s canonical form | 11 11 12 34 26.3s basics | 11 11 3.6s degenerate hybrid: complex case | 5 2 7 11.9s non-degenerate hybrid: simpler case | 6 10 16 10.8s calibration | 43 43 3m05.2s exact tree calibration for the BM | 411 411 12.9s exact network calibration for the BM | 11 11 44.9s RNG of the outermost testset: Random.Xoshiro(0x003092ca504c08ed, 0x141b451c339ec1cb, 0x49448ceba5567473, 0x83feed6473b68d1e, 0x46d1a0784fd6705f) ERROR: LoadError: Some tests did not pass: 555 passed, 11 failed, 12 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/runtests.jl:13 Testing failed after 788.64s ERROR: LoadError: Package PhyloGaussianBeliefProp errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2672 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2521 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:311 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [14] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 994.45s: package tests unexpectedly errored