Package evaluation of PedigreeBase on Julia 1.13.0-DEV.974 (7bbb213719*) started at 2025-08-12T12:04:36.060 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.02s ################################################################################ # Installation # Installing PedigreeBase... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [9e3bf72a] + PedigreeBase v0.1.5 Updating `~/.julia/environments/v1.13/Manifest.toml` [6fe1bfb0] + OffsetArrays v1.17.0 [9e3bf72a] + PedigreeBase v0.1.5 [5cb6c4b0] + SparseMatrixDicts v0.3.0 [56f22d72] + Artifacts v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Installation completed after 1.19s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 16.19s ################################################################################ # Testing # Testing PedigreeBase Status `/tmp/jl_avqwyi/Project.toml` [6fe1bfb0] OffsetArrays v1.17.0 [9e3bf72a] PedigreeBase v0.1.5 [5cb6c4b0] SparseMatrixDicts v0.3.0 [37e2e46d] LinearAlgebra v1.13.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_avqwyi/Manifest.toml` [6fe1bfb0] OffsetArrays v1.17.0 [9e3bf72a] PedigreeBase v0.1.5 [5cb6c4b0] SparseMatrixDicts v0.3.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [8dfed614] Test v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.13.1+0 Testing Running tests... Test Summary: | Pass Total Time Reading pedigree | 7 7 3.5s The following warning is expected. Test Summary: | Pass Total Time Wrong file format | 8 8 0.4s Test Summary: | Pass Total Time Logical error in pedigree | 8 8 0.8s Test Summary: | Pass Total Time Permutation of pedigree | 4 4 2.7s Pedigree with UPG: Error During Test at /home/pkgeval/.julia/packages/PedigreeBase/xdXiA/test/runtests.jl:94 Got exception outside of a @test Invalid ID found Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] convert_pedigree_tuple_to_matrix(pedtuple::Vector{Tuple{Int64, Int64, Int64}}, lastid::Int64) @ PedigreeBase ~/.julia/packages/PedigreeBase/xdXiA/src/io.jl:178 [3] set_upg(pedlist::Matrix{Int64}, idtable::Dict{String, Int64}, upgtable::Dict{String, Int64}; sortkeys::Bool) @ PedigreeBase ~/.julia/packages/PedigreeBase/xdXiA/src/io.jl:406 [4] set_upg(pedlist::Matrix{Int64}, idtable::Dict{String, Int64}, upgtable::Dict{String, Int64}) @ PedigreeBase ~/.julia/packages/PedigreeBase/xdXiA/src/io.jl:325 [5] top-level scope @ ~/.julia/packages/PedigreeBase/xdXiA/test/runtests.jl:95 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [7] macro expansion @ ~/.julia/packages/PedigreeBase/xdXiA/test/runtests.jl:97 [inlined] [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [9] top-level scope @ none:6 [10] eval(m::Module, e::Any) @ Core ./boot.jl:489 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [12] _start() @ Base ./client.jl:553 Test Summary: | Error Total Time Pedigree with UPG | 1 1 3.8s RNG of the outermost testset: Random.Xoshiro(0x44b6d53ebe4256f3, 0x0cdcac8b573f9c00, 0x2603ee84e37003f4, 0xf8e3179b40687b56, 0xf79628b7f80c9e11) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PedigreeBase/xdXiA/test/runtests.jl:94 Testing failed after 21.71s ERROR: LoadError: Package PedigreeBase errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2672 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2521 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:311 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [14] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 64.87s: package tests unexpectedly errored