Package evaluation of OpenSMILES on Julia 1.13.0-DEV.974 (7bbb213719*) started at 2025-08-12T13:38:17.127


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 10.16s


################################################################################
# Installation
#

Installing OpenSMILES...
   Resolving package versions...
    Updating `~/.julia/environments/v1.13/Project.toml`
  [29c4880b] + OpenSMILES v0.1.0
    Updating `~/.julia/environments/v1.13/Manifest.toml`
⌅ [ec485272] + ArnoldiMethod v0.1.0
  [34da2185] + Compat v4.18.0
⌅ [864edb3b] + DataStructures v0.18.22
⌃ [86223c79] + Graphs v1.9.0
  [d25df0c9] + Inflate v0.1.5
  [093fc24a] + LightGraphs v1.3.5
  [1914dd2f] + MacroTools v0.5.16
  [29c4880b] + OpenSMILES v0.1.0
  [bac558e1] + OrderedCollections v1.8.1
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.5.0
  [699a6c99] + SimpleTraits v0.9.5
  [47aef6b3] + SimpleWeightedGraphs v1.5.0
  [90137ffa] + StaticArrays v1.9.14
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [8e850b90] + libblastrampoline_jll v5.13.1+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 1.09s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 43.39s


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# Testing
#

     Testing OpenSMILES
      Status `/tmp/jl_19DGRR/Project.toml`
  [093fc24a] LightGraphs v1.3.5
  [29c4880b] OpenSMILES v0.1.0
  [47aef6b3] SimpleWeightedGraphs v1.5.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_19DGRR/Manifest.toml`
⌅ [ec485272] ArnoldiMethod v0.1.0
  [34da2185] Compat v4.18.0
⌅ [864edb3b] DataStructures v0.18.22
⌃ [86223c79] Graphs v1.9.0
  [d25df0c9] Inflate v0.1.5
  [093fc24a] LightGraphs v1.3.5
  [1914dd2f] MacroTools v0.5.16
  [29c4880b] OpenSMILES v0.1.0
  [bac558e1] OrderedCollections v1.8.1
  [aea7be01] PrecompileTools v1.3.2
  [21216c6a] Preferences v1.5.0
  [699a6c99] SimpleTraits v0.9.5
  [47aef6b3] SimpleWeightedGraphs v1.5.0
  [90137ffa] StaticArrays v1.9.14
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [1a1011a3] SharedArrays v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] OpenBLAS_jll v0.3.29+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [8e850b90] libblastrampoline_jll v5.13.1+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
Test Summary:     | Pass  Total  Time
Read Next Element |    6      6  1.1s
Test Summary:     | Pass  Total  Time
Read Next Numeric |    3      3  0.9s
Test Summary:    | Pass  Total  Time
Read Next Charge |    6      6  1.6s
Test Summary:  | Pass  Total  Time
Brackets Known |    4      4  1.5s
Test Summary:         | Pass  Total  Time
Brackets Equivalences |    4      4  0.0s

ParseOpenSMILES Checking Implicit Hydrogens on Simple Molecules: Error During Test at /home/pkgeval/.julia/packages/OpenSMILES/LgYRr/test/runtests.jl:42
  Got exception outside of a @test
  MethodError: no method matching add_vertex!(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64})
  The definition in SimpleWeightedGraphs may have intended to extend (LightGraphs.SimpleGraphs).add_vertex!
  The function `add_vertex!` exists, but no method is defined for this combination of argument types.
  Closest candidates are:
    add_vertex!(!Matched::LightGraphs.SimpleGraphs.SimpleDiGraph{T}) where T
     @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/SimpleGraphs/simpledigraph.jl:449
    add_vertex!(!Matched::LightGraphs.SimpleGraphs.SimpleGraph{T}) where T
     @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/SimpleGraphs/simplegraph.jl:526
  Stacktrace:
    [1] ParseSMILES(S::String, calculate_implicit_hydrogens::Bool)
      @ OpenSMILES ~/.julia/packages/OpenSMILES/LgYRr/src/SMILESParser.jl:81
    [2] ParseSMILES(S::String)
      @ OpenSMILES ~/.julia/packages/OpenSMILES/LgYRr/src/SMILESParser.jl:7
    [3] top-level scope
      @ ~/.julia/packages/OpenSMILES/LgYRr/test/runtests.jl:43
    [4] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined]
    [5] macro expansion
      @ ~/.julia/packages/OpenSMILES/LgYRr/test/runtests.jl:43 [inlined]
    [6] include(mapexpr::Function, mod::Module, _path::String)
      @ Base ./Base.jl:312
    [7] top-level scope
      @ none:6
    [8] eval(m::Module, e::Any)
      @ Core ./boot.jl:489
    [9] exec_options(opts::Base.JLOptions)
      @ Base ./client.jl:286
   [10] _start()
      @ Base ./client.jl:553
Test Summary:                                                   | Error  Total  Time
ParseOpenSMILES Checking Implicit Hydrogens on Simple Molecules |     1      1  7.2s
RNG of the outermost testset: Random.Xoshiro(0x76ecbd68e277c7db, 0x958f5b36f1397891, 0xf525d383f406d471, 0x25b36e1ee29aae5b, 0x093ff379ac811c40)
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/OpenSMILES/LgYRr/test/runtests.jl:42

Testing failed after 23.76s

ERROR: LoadError: Package OpenSMILES errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2672
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2521 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:311
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:320
 [14] _start()
    @ Base ./client.jl:553
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 93.73s: package tests unexpectedly errored