Package evaluation of OceanTransportMatrixBuilder on Julia 1.13.0-DEV.974 (7bbb213719*) started at 2025-08-12T12:43:55.376 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.8s ################################################################################ # Installation # Installing OceanTransportMatrixBuilder... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [c2b4a04e] + OceanTransportMatrixBuilder v0.5.3 Updating `~/.julia/environments/v1.13/Manifest.toml` [b4f34e82] + Distances v0.10.12 [c2b4a04e] + OceanTransportMatrixBuilder v0.5.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.5.0 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Installation completed after 1.08s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 1696.94s ################################################################################ # Testing # Testing OceanTransportMatrixBuilder Status `/tmp/jl_H6XO1c/Project.toml` [336ed68f] CSV v0.10.15 [13f3f980] CairoMakie v0.15.5 [a93c6f00] DataFrames v1.7.0 [0703355e] DimensionalData v0.29.21 [b4f34e82] Distances v0.10.12 [9a22fb26] GibbsSeaWater v0.1.4 [ee78f7c6] Makie v0.24.5 [b946abbf] NaNStatistics v0.6.54 [30363a11] NetCDF v0.12.2 [c2b4a04e] OceanTransportMatrixBuilder v0.5.3 [90137ffa] StaticArrays v1.9.14 [f8b46487] TestItemRunner v1.1.0 [1c621080] TestItems v1.0.0 [1986cc42] Unitful v1.24.0 [c21b50f5] YAXArrays v0.6.1 [0a941bbe] Zarr v0.9.4 [f43a241f] Downloads v1.7.0 [37e2e46d] LinearAlgebra v1.13.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_H6XO1c/Manifest.toml` [47edcb42] ADTypes v1.16.0 [fbe9abb3] AWS v1.94.1 ⌅ [1c724243] AWSS3 v0.10.4 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.3.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [dce04be8] ArgCheck v2.5.0 [4fba245c] ArrayInterface v7.19.0 [31f734f8] ArrowTypes v2.3.0 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [18cc8868] BaseDirs v1.3.2 [d1d4a3ce] BitFlags v0.1.9 [a74b3585] Blosc v0.7.3 [fa961155] CEnum v0.5.0 ⌅ [179af706] CFTime v0.1.4 [96374032] CRlibm v1.0.2 [336ed68f] CSV v0.10.15 [159f3aea] Cairo v1.1.1 [13f3f980] CairoMakie v0.15.5 [d360d2e6] ChainRulesCore v1.26.0 [6309b1aa] CodecInflate64 v0.1.3 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.1 [35d6a980] ColorSchemes v3.30.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.0 [95dc2771] ComputePipeline v0.1.4 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [927a84f5] DelaunayTriangulation v1.6.4 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.4 [0703355e] DimensionalData v0.29.21 [fcd2136c] DiskArrayTools v0.1.12 [3c3547ce] DiskArrays v0.4.15 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [429591f6] ExactPredicates v2.2.8 [460bff9d] ExceptionUnwrapping v0.1.11 [e2ba6199] ExprTools v0.1.10 [411431e0] Extents v0.1.6 [8f5d6c58] EzXML v1.2.2 [7a1cc6ca] FFTW v1.9.0 [5789e2e9] FileIO v1.17.0 ⌅ [8fc22ac5] FilePaths v0.8.3 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.0.1 [b38be410] FreeType v4.1.1 [663a7486] 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[682c06a0] JSON v0.21.4 [b835a17e] JpegTurbo v0.1.6 [5ab0869b] KernelDensity v0.6.10 [8ac3fa9e] LRUCache v1.6.2 [b964fa9f] LaTeXStrings v1.4.0 [8cdb02fc] LazyModules v0.3.1 [d3d80556] LineSearches v7.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [ee78f7c6] Makie v0.24.5 [dbb5928d] MappedArrays v0.4.2 [0a4f8689] MathTeXEngine v0.6.6 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 ⌅ [78c3b35d] Mocking v0.7.9 [e94cdb99] MosaicViews v0.3.4 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [b946abbf] NaNStatistics v0.6.54 [30363a11] NetCDF v0.12.2 [f09324ee] Netpbm v1.1.1 [510215fc] Observables v0.5.5 [c2b4a04e] OceanTransportMatrixBuilder v0.5.3 [6fe1bfb0] OffsetArrays v1.17.0 [a15396b6] OnlineStats v1.7.1 [925886fa] OnlineStatsBase v1.7.1 [52e1d378] OpenEXR v0.3.3 [4d8831e6] OpenSSL v1.5.0 [429524aa] Optim v1.13.2 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [f57f5aa1] PNGFiles v0.4.4 [19eb6ba3] Packing v0.5.1 [5432bcbf] PaddedViews v0.5.12 [fad6cfc8] ParallelUtilities v0.8.6 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [eebad327] PkgVersion v0.3.3 [995b91a9] PlotUtils v1.4.3 [647866c9] PolygonOps v0.1.2 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [4b34888f] QOI v1.0.1 [1fd47b50] QuadGK v2.11.2 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [20febd7b] Retry v0.4.1 [79098fc4] Rmath v0.8.0 [5eaf0fd0] RoundingEmulator v0.2.1 [fdea26ae] SIMD v3.7.1 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [65257c39] ShaderAbstractions v0.5.0 [992d4aef] Showoff v1.0.3 [73760f76] SignedDistanceFields v0.4.0 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v1.4.2 [e3aaa7dc] WebP v0.1.3 [bbac0a1f] WeightedOnlineStats v0.6.3 [efce3f68] WoodburyMatrices v1.0.0 [76eceee3] WorkerUtilities v1.6.1 [228000da] XMLDict v0.4.1 [90b8fcef] YAXArrayBase v0.7.6 [c21b50f5] YAXArrays v0.6.1 [0a941bbe] Zarr v0.9.4 [49080126] ZipArchives v2.5.1 [0b7ba130] Blosc_jll v1.21.7+0 [6e34b625] Bzip2_jll v1.0.9+0 [4e9b3aee] CRlibm_jll v1.0.1+0 [83423d85] Cairo_jll v1.18.5+0 [5ae413db] EarCut_jll v2.2.4+0 [2e619515] Expat_jll v2.6.5+0 ⌅ [b22a6f82] FFMPEG_jll v6.1.3+0 [f5851436] FFTW_jll v3.3.11+0 [a3f928ae] Fontconfig_jll v2.16.0+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [b0724c58] GettextRuntime_jll v0.22.4+0 [6727f6b2] GibbsSeaWater_jll v3.5.2+0 [59f7168a] Giflib_jll v5.2.3+0 [7746bdde] Glib_jll v2.84.3+0 [3b182d85] Graphite2_jll v1.3.15+0 [0234f1f7] HDF5_jll v1.14.6+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [e33a78d0] Hwloc_jll v2.12.1+0 [905a6f67] Imath_jll v3.1.11+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [aacddb02] JpegTurbo_jll v3.1.1+0 [c1c5ebd0] LAME_jll v3.100.3+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.0+0 [89763e89] Libtiff_jll v4.7.1+0 [38a345b3] Libuuid_jll v2.41.0+0 [5ced341a] Lz4_jll v1.10.1+0 [856f044c] MKL_jll v2025.2.0+0 [7cb0a576] MPICH_jll v4.3.1+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [c8ffd9c3] MbedTLS_jll v2.28.6+2 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [7243133f] NetCDF_jll v401.900.300+0 [e7412a2a] Ogg_jll v1.3.6+0 [6cdc7f73] OpenBLASConsistentFPCSR_jll v0.3.29+0 [18a262bb] OpenEXR_jll v3.2.4+0 [fe0851c0] OpenMPI_jll v5.0.8+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [91d4177d] Opus_jll v1.5.2+0 [36c8627f] Pango_jll v1.56.3+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.6+1 [ffd25f8a] XZ_jll v5.8.1+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [9a68df92] isoband_jll v0.2.3+0 [477f73a3] libaec_jll v1.1.3+0 [a4ae2306] libaom_jll v3.12.1+0 [0ac62f75] libass_jll v0.17.4+0 [f638f0a6] libfdk_aac_jll v2.0.4+0 [b53b4c65] libpng_jll v1.6.50+0 [075b6546] libsixel_jll v1.10.5+0 [a9144af2] libsodium_jll v1.0.21+0 [f27f6e37] libvorbis_jll v1.3.8+0 [c5f90fcd] libwebp_jll v1.6.0+0 [337d8026] libzip_jll v1.11.3+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [1270edf5] x264_jll v10164.0.1+0 [dfaa095f] x265_jll v4.1.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [8bf52ea8] CRC32c v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.7.15 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 7124.7 ms ✓ NetCDF 1 dependency successfully precompiled in 8 seconds. 52 already precompiled. Precompiling packages... 12927.3 ms ✓ YAXArrays 1 dependency successfully precompiled in 14 seconds. 153 already precompiled. Precompiling packages... 5753.9 ms ✓ YAXArrayBase → NetCDFExt 1 dependency successfully precompiled in 6 seconds. 59 already precompiled. Precompiling packages... 9551.5 ms ✓ ZipArchives 2045.9 ms ✓ EzXML 6130.4 ms ✓ GitHub 1230.6 ms ✓ XMLDict 7568.6 ms ✓ AWS 6007.0 ms ✓ AWSS3 Info Given Zarr was explicitly requested, output will be shown live  WARNING: Constructor for type "UInt8" was extended in `Zarr` without explicit qualification or import.  NOTE: Assumed "UInt8" refers to `Base.UInt8`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function UInt8 end`.  Hint: To silence the warning, qualify `UInt8` as `Base.UInt8` in the method signature or explicitly `import Base: UInt8`. 30377.1 ms ✓ Zarr 7 dependencies successfully precompiled in 63 seconds. 78 already precompiled. 1 dependency had output during precompilation: ┌ Zarr │ [Output was shown above] └ Precompiling packages... 8278.0 ms ✓ YAXArrayBase → ZarrExt 1 dependency successfully precompiled in 9 seconds. 86 already precompiled. Precompiling packages... 82863.7 ms ✓ DataFrames 1 dependency successfully precompiled in 83 seconds. 34 already precompiled. Precompiling packages... 2659.5 ms ✓ WeakRefStrings 29281.8 ms ✓ CSV 2 dependencies successfully precompiled in 32 seconds. 28 already precompiled. Precompiling packages... 2840.2 ms ✓ Unitful → ForwardDiffExt 1 dependency successfully precompiled in 3 seconds. 21 already precompiled. [ Info: Loading catalog [ Info: Finding ztores for uo, vo, umo, vmo, mlotst, areacello, and volcello areacello_store = (filter((row->(#= /home/pkgeval/.julia/packages/OceanTransportMatrixBuilder/kHFNF/test/online.jl:25 =# row.variable_id == "areacello" && (row.table_id == "Ofx" && common_filter(row)))), catalog)).zstore[1] = "gs://cmip6/CMIP6/CMIP/CSIRO/ACCESS-ESM1-5/historical/r1i1p1f1/Ofx/areacello/gn/v20191115/" volcello_store = (filter((row->(#= /home/pkgeval/.julia/packages/OceanTransportMatrixBuilder/kHFNF/test/online.jl:26 =# row.variable_id == "volcello" && (row.table_id == "Ofx" && common_filter(row)))), catalog)).zstore[1] = "gs://cmip6/CMIP6/CMIP/CSIRO/ACCESS-ESM1-5/historical/r1i1p1f1/Ofx/volcello/gn/v20191115/" mlotst_store = (filter((row->(#= /home/pkgeval/.julia/packages/OceanTransportMatrixBuilder/kHFNF/test/online.jl:27 =# row.variable_id == "mlotst" && (row.table_id == "Omon" && common_filter(row)))), catalog)).zstore[1] = "gs://cmip6/CMIP6/CMIP/CSIRO/ACCESS-ESM1-5/historical/r1i1p1f1/Omon/mlotst/gn/v20191115/" umo_store = (filter((row->(#= /home/pkgeval/.julia/packages/OceanTransportMatrixBuilder/kHFNF/test/online.jl:28 =# row.variable_id == "umo" && (row.table_id == "Omon" && common_filter(row)))), catalog)).zstore[1] = "gs://cmip6/CMIP6/CMIP/CSIRO/ACCESS-ESM1-5/historical/r1i1p1f1/Omon/umo/gn/v20191115/" vmo_store = (filter((row->(#= /home/pkgeval/.julia/packages/OceanTransportMatrixBuilder/kHFNF/test/online.jl:29 =# row.variable_id == "vmo" && (row.table_id == "Omon" && common_filter(row)))), catalog)).zstore[1] = "gs://cmip6/CMIP6/CMIP/CSIRO/ACCESS-ESM1-5/historical/r1i1p1f1/Omon/vmo/gn/v20191115/" uo_store = (filter((row->(#= /home/pkgeval/.julia/packages/OceanTransportMatrixBuilder/kHFNF/test/online.jl:30 =# row.variable_id == "uo" && (row.table_id == "Omon" && common_filter(row)))), catalog)).zstore[1] = "gs://cmip6/CMIP6/CMIP/CSIRO/ACCESS-ESM1-5/historical/r1i1p1f1/Omon/uo/gn/v20191115/" vo_store = (filter((row->(#= /home/pkgeval/.julia/packages/OceanTransportMatrixBuilder/kHFNF/test/online.jl:31 =# row.variable_id == "vo" && (row.table_id == "Omon" && common_filter(row)))), catalog)).zstore[1] = "gs://cmip6/CMIP6/CMIP/CSIRO/ACCESS-ESM1-5/historical/r1i1p1f1/Omon/vo/gn/v20191115/" [ Info: Lazily load data using Zarr [ Info: Select first time step to limit download size [ Info: Load variables in memory [ Info: Timescales (divergence and mass conservation) [ Info: T: [ Info: div: 1.6e-5 Myr [ Info: vol: 6.1e6 Myr [ Info: Tadv: [ Info: div: 1.6e-5 Myr [ Info: vol: 9.9e8 Myr [ Info: TκH: [ Info: div: 5.7e8 Myr [ Info: vol: 7.9e8 Myr [ Info: TκVML: [ Info: div: 1.4e7 Myr [ Info: vol: 7.1e7 Myr [ Info: TκVdeep: [ Info: div: 2.0e10 Myr [ Info: vol: 1.1e11 Myr Test Summary: | Pass Broken Total Time Package | 15 6 21 8m52.6s test/online.jl | 15 6 21 8m52.6s ACCESS-ESM1-5 | 15 6 21 8m52.6s Testing OceanTransportMatrixBuilder tests passed Testing completed after 584.96s PkgEval succeeded after 2326.26s