Package evaluation of NQCModels on Julia 1.13.0-DEV.974 (7bbb213719*) started at 2025-08-12T18:52:54.101 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.17s ################################################################################ # Installation # Installing NQCModels... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [c814dc9f] + NQCModels v1.0.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [4c555306] + ArrayLayouts v1.11.2 [a963bdd2] + AtomsBase v0.5.1 [093aae92] + BSplineKit v0.19.0 [aae01518] + BandedMatrices v1.9.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [82cc6244] + DataInterpolations v8.5.0 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [352459e4] + ExtXYZ v0.2.2 [442a2c76] + FastGaussQuadrature v1.0.2 [1a297f60] + FillArrays v1.13.0 [64ca27bc] + FindFirstFunctions v1.4.1 ⌅ [f6369f11] + ForwardDiff v0.10.38 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [78c76ebc] + NQCBase v1.0.0 [c814dc9f] + NQCModels v1.0.0 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 [d96e819e] + Parameters v0.12.3 [7b2266bf] + PeriodicTable v1.2.1 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v2.4.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.24.0 [a7773ee8] + UnitfulAtomic v1.0.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [6ecdc6fc] + extxyz_jll v0.1.3+0 [cdc7adba] + libcleri_jll v0.12.1+3 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.75s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 170.74s ################################################################################ # Testing # Testing NQCModels Updating git-repo `https://github.com/JuliaMolSim/JuLIP.jl.git` Status `/tmp/jl_7RfolY/Project.toml` [a963bdd2] AtomsBase v0.5.1 [093aae92] BSplineKit v0.19.0 [82cc6244] DataInterpolations v8.5.0 [8bb1440f] DelimitedFiles v1.9.1 [442a2c76] FastGaussQuadrature v1.0.2 [6a86dc24] FiniteDiff v2.27.0 ⌅ [f6369f11] ForwardDiff v0.10.38 [945c410c] JuLIP v0.16.0 `https://github.com/JuliaMolSim/JuLIP.jl.git#master` [78c76ebc] NQCBase v1.0.0 [c814dc9f] NQCModels v1.0.0 [d96e819e] Parameters v0.12.3 [91a5bcdd] Plots v1.40.18 [438e738f] PyCall v1.96.4 [6099a3de] PythonCall v0.9.26 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [1bc83da4] SafeTestsets v0.1.0 [90137ffa] StaticArrays v1.9.14 [10745b16] Statistics v1.11.1 [1986cc42] Unitful v1.24.0 [a7773ee8] UnitfulAtomic v1.0.0 [b77e0a4c] InteractiveUtils v1.11.0 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time CompositeModel | 1 1 7.1s ┌ Warning: (ReferenceGaussLegendre) The division by sqrt(ΔE) in the coupling is incorrect. Use ShenviGaussLegendre instead. └ @ NQCModels.BathDiscretisations ~/.julia/packages/NQCModels/5GDfe/src/bath_discretisations/shenvi_gauss_legendre.jl:51 Test Summary: | Pass Total Time Wide band bath discretisations | 6 6 10.4s 10.413008 seconds (4.36 M allocations: 238.648 MiB, 0.98% gc time, 99.29% compilation time: 11% of which was recompilation) Test Summary: | Pass Total Time Anderson Holstein | 4 4 8.7s 8.721887 seconds (2.94 M allocations: 159.426 MiB, 1.07% gc time, 99.72% compilation time) Precompiling packages... 6749.3 ms ✓ ArrayInterface → ArrayInterfaceBandedMatricesExt 1 dependency successfully precompiled in 7 seconds. 17 already precompiled. Precompiling packages... 3772.4 ms ✓ FiniteDiff → FiniteDiffBandedMatricesExt 1 dependency successfully precompiled in 4 seconds. 26 already precompiled. Test Summary: | Pass Total Time AdiabaticStateSelector | 6 6 22.7s WARNING: Method definition ndofs(Main.TestModel) in module Main at /home/pkgeval/.julia/packages/NQCModels/5GDfe/test/runtests.jl:56 overwritten at /home/pkgeval/.julia/packages/NQCModels/5GDfe/test/runtests.jl:59. Test Summary: | Pass Total Time Potential abstraction | 3 3 0.1s Precompiling packages... 4760.1 ms ✓ StatsBase 8756.8 ms ✓ ColorSchemes 19406.0 ms ✓ PlotUtils 11055.2 ms ✓ PlotThemes 9852.9 ms ✓ RecipesPipeline 113542.3 ms ✓ Plots 21556.5 ms ✓ Plots → UnitfulExt 7 dependencies successfully precompiled in 194 seconds. 171 already precompiled. Plot: Error During Test at /home/pkgeval/.julia/packages/NQCModels/5GDfe/test/runtests.jl:66 Got exception outside of a @test matrix does not have contiguous columns Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] _chkstride1(ok::Bool) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/LinearAlgebra.jl:300 ┌ [3] _chkstride1 │ @ /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/LinearAlgebra.jl:301 [inlined] ╰──── repeated 2 times [5] chkstride1 @ /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/LinearAlgebra.jl:299 [inlined] [6] lacpy!(B::SubArray{Float64, 2, Array{Float64, 3}, Tuple{Int64, Base.Slice{Base.OneTo{Int64}}, Base.Slice{Base.OneTo{Int64}}}, true}, A::Matrix{Float64}, uplo::Char) @ LinearAlgebra.LAPACK /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/lapack.jl:7179 [7] copytrito! @ /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/generic.jl:2162 [inlined] [8] _copyto! @ /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/symmetric.jl:385 [inlined] [9] copyto! @ /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/symmetric.jl:380 [inlined] [10] copyto! @ ./broadcast.jl:990 [inlined] [11] copyto! @ ./broadcast.jl:949 [inlined] [12] materialize! @ ./broadcast.jl:907 [inlined] [13] materialize!(dest::SubArray{Float64, 2, Array{Float64, 3}, Tuple{Int64, Base.Slice{Base.OneTo{Int64}}, Base.Slice{Base.OneTo{Int64}}}, true}, bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{2}, Nothing, typeof(identity), Tuple{Hermitian{Float64, Matrix{Float64}}}}) @ Base.Broadcast ./broadcast.jl:904 [14] macro expansion @ ~/.julia/packages/NQCModels/5GDfe/src/plot.jl:49 [inlined] [15] apply_recipe(plotattributes::AbstractDict{Symbol, Any}, x::Any, model::NQCModels.QuantumModels.QuantumModel) @ NQCModels.Plot ~/.julia/packages/RecipesBase/BRe07/src/RecipesBase.jl:300 [16] _process_userrecipes!(plt::Any, plotattributes::Any, args::Any) @ RecipesPipeline ~/.julia/packages/RecipesPipeline/BGM3l/src/user_recipe.jl:38 [17] recipe_pipeline!(plt::Any, plotattributes::Any, args::Any) @ RecipesPipeline ~/.julia/packages/RecipesPipeline/BGM3l/src/RecipesPipeline.jl:72 [18] _plot!(plt::Plots.Plot, plotattributes::Any, args::Any) @ Plots ~/.julia/packages/Plots/HNuj5/src/plot.jl:223 [19] #plot#150 @ ~/.julia/packages/Plots/HNuj5/src/plot.jl:102 [inlined] [20] plot(::Any, ::Any) @ Plots ~/.julia/packages/Plots/HNuj5/src/plot.jl:93 [21] top-level scope @ ~/.julia/packages/NQCModels/5GDfe/test/runtests.jl:67 [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [23] macro expansion @ ~/.julia/packages/NQCModels/5GDfe/test/runtests.jl:69 [inlined] [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [25] top-level scope @ none:6 [26] eval(m::Module, e::Any) @ Core ./boot.jl:489 [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [28] _start() @ Base ./client.jl:553 Test Summary: | Error Total Time Plot | 1 1 4m03.4s RNG of the outermost testset: Random.Xoshiro(0xaa69a0b1b735add0, 0x54f84cbfc7769662, 0xff3e37052c0620b3, 0xa530137823ed49ed, 0x29da2253e53519f0) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/NQCModels/5GDfe/test/runtests.jl:66 Testing failed after 317.28s ERROR: LoadError: Package NQCModels errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2672 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2521 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:311 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [14] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 532.45s: package tests unexpectedly errored