Package evaluation of LaMEM on Julia 1.13.0-DEV.974 (7bbb213719*) started at 2025-08-13T03:55:46.248 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.69s ################################################################################ # Installation # Installing LaMEM... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [2e889f3d] + LaMEM v0.4.7 Updating `~/.julia/environments/v1.13/Manifest.toml` [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.7 [7b0aa2c9] + BibTeX v0.1.0 [fa961155] + CEnum v0.5.0 [179af706] + CFTime v0.2.1 [d360d2e6] + ChainRulesCore v1.26.0 [944b1d66] + CodecZlib v0.7.8 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 [1fbeeb36] + CommonDataModel v0.3.9 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [150eb455] + CoordinateTransformations v0.6.4 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [3c3547ce] + DiskArrays v0.4.15 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [411431e0] + Extents v0.1.6 [c87230d0] + FFMPEG v0.4.4 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.0.1 [e018b62d] + GeoParams v0.7.6 [0ef565a4] + Geodesy v1.1.0 [5c1252a2] + GeometryBasics v0.5.10 [3700c31b] + GeophysicalModelGenerator v0.7.14 [c27321d9] + Glob v1.3.1 [076d061b] + HashArrayMappedTries v0.2.0 [615f187c] + IfElse v0.1.1 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [7d512f48] + InternedStrings v0.7.0 ⌅ [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.1 [b835a17e] + JpegTurbo v0.1.6 [49dc5b4e] + KernelDensitySJ v0.2.1 [8ac3fa9e] + LRUCache v1.6.2 [2e889f3d] + LaMEM v0.4.7 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 [9c8b4983] + LightXML v0.9.2 [4345ca2d] + Loess v0.6.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [da04e1cc] + MPI v0.20.23 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [dbb5928d] + MappedArrays v0.4.2 [7269a6da] + MeshIO v0.5.3 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [46d2c3a1] + MuladdMacro v0.2.4 [85f8d34a] + NCDatasets v0.14.8 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.22 [f09324ee] + Netpbm v1.1.1 [6fe1bfb0] + OffsetArrays v1.17.0 [52e1d378] + OpenEXR v0.3.3 [bac558e1] + OrderedCollections v1.8.1 [f57f5aa1] + PNGFiles v0.4.4 [5432bcbf] + PaddedViews v0.5.12 [d96e819e] + Parameters v0.12.3 [eebad327] + PkgVersion v0.3.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.5.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [4b34888f] + QOI v1.0.1 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [dc215faf] + ReadVTK v0.2.5 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [f2b01f46] + Roots v2.2.8 [fdea26ae] + SIMD v3.7.1 [7e506255] + ScopedValues v1.4.0 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.5 [45858cf5] + Sixel v0.1.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [cae243ae] + StackViews v0.1.2 [aedffcd0] + Static v1.2.0 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [62fd8b95] + TensorCore v0.1.1 [731e570b] + TiffImages v0.11.4 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [967fb449] + Unidecode v1.2.0 [1986cc42] + Unitful v1.24.0 [4004b06d] + VTKBase v1.0.1 [e3aaa7dc] + WebP v0.1.3 [ea906314] + WhereTheWaterFlows v0.11.1 [efce3f68] + WoodburyMatrices v1.0.0 [64499a7a] + WriteVTK v1.21.2 ⌅ [8ce61222] + Arrow_jll v10.0.1+0 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [5ae413db] + EarCut_jll v2.2.4+0 [2e619515] + Expat_jll v2.6.5+0 [b22a6f82] + FFMPEG_jll v7.1.1+0 [a3f928ae] + Fontconfig_jll v2.16.0+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 ⌅ [a7073274] + GDAL_jll v301.900.0+0 [d604d12d] + GEOS_jll v3.13.1+1 [b0724c58] + GettextRuntime_jll v0.22.4+0 [59f7168a] + Giflib_jll v5.2.3+0 [7746bdde] + Glib_jll v2.84.3+0 [3b182d85] + Graphite2_jll v1.3.15+0 ⌅ [0234f1f7] + HDF5_jll v1.14.3+3 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [a51ab1cf] + ICU_jll v76.2.0+0 [905a6f67] + Imath_jll v3.1.11+0 [aacddb02] + JpegTurbo_jll v3.1.1+0 [b39eb1a6] + Kerberos_krb5_jll v1.21.3+0 [c1c5ebd0] + LAME_jll v3.100.3+0 ⌅ [88015f11] + LERC_jll v3.0.0+1 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 ⌅ [15d6fa20] + LaMEM_jll v2.1.4+0 [08be9ffa] + LibPQ_jll v16.8.0+0 [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.0+0 ⌅ [89763e89] + Libtiff_jll v4.5.1+1 [38a345b3] + Libuuid_jll v2.41.0+0 [d3a379c0] + LittleCMS_jll v2.16.0+0 [5ced341a] + Lz4_jll v1.10.1+0 ⌅ [7cb0a576] + MPICH_jll v4.1.2+1 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 ⌅ [7243133f] + NetCDF_jll v400.902.211+1 [e7412a2a] + Ogg_jll v1.3.6+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [18a262bb] + OpenEXR_jll v3.2.4+0 [643b3616] + OpenJpeg_jll v2.5.4+0 ⌅ [fe0851c0] + OpenMPI_jll v4.1.8+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [91d4177d] + Opus_jll v1.5.2+0 ⌅ [8fa3689e] + PETSc_jll v3.19.6+0 ⌅ [58948b4f] + PROJ_jll v901.300.0+1 ⌅ [30392449] + Pixman_jll v0.44.2+0 [aabda75e] + SCALAPACK32_jll v2.2.1+1 [76ed43ae] + SQLite_jll v3.48.0+0 ⌅ [e0b8ae26] + Thrift_jll v0.16.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.6+1 [ffd25f8a] + XZ_jll v5.8.1+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 ⌅ [28df3c45] + boost_jll v1.76.0+1 [477f73a3] + libaec_jll v1.1.3+0 [a4ae2306] + libaom_jll v3.12.1+0 [0ac62f75] + libass_jll v0.17.4+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 ⌃ [06c338fa] + libgeotiff_jll v100.701.300+0 [b53b4c65] + libpng_jll v1.6.50+0 [075b6546] + libsixel_jll v1.10.5+0 [f27f6e37] + libvorbis_jll v1.3.8+0 ⌃ [c5f90fcd] + libwebp_jll v1.4.0+0 [337d8026] + libzip_jll v1.11.3+0 [fe1e1685] + snappy_jll v1.2.3+0 [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 15.07s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:76 Precompiling package dependencies... Precompilation completed after 2059.35s ################################################################################ # Testing # Testing LaMEM Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_OJEUUO/Project.toml` [13f3f980] + CairoMakie v0.15.5 [2e889f3d] + LaMEM v0.4.7 [91a5bcdd] + Plots v1.40.18 Updating `/tmp/jl_OJEUUO/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [35492f91] + AdaptivePredicates v1.2.0 [27a7e980] + Animations v0.4.2 [67c07d97] + Automa v1.1.0 [18cc8868] + BaseDirs v1.3.2 [d1d4a3ce] + BitFlags v0.1.9 [96374032] + CRlibm v1.0.2 [159f3aea] + Cairo v1.1.1 [13f3f980] + CairoMakie v0.15.5 [a2cac450] + ColorBrewer v0.4.1 [35d6a980] + ColorSchemes v3.30.0 [95dc2771] + ComputePipeline v0.1.4 [f0e56b4a] + ConcurrentUtilities v2.5.0 [d38c429a] + Contour v0.6.3 [e2d170a0] + DataValueInterfaces v1.0.0 [927a84f5] + DelaunayTriangulation v1.6.4 [31c24e10] + Distributions v0.25.120 [4e289a0a] + EnumX v1.0.5 [429591f6] + ExactPredicates v2.2.8 [460bff9d] + ExceptionUnwrapping v0.1.11 [7a1cc6ca] + FFTW v1.9.0 ⌅ [8fc22ac5] + FilePaths v0.8.3 [48062228] + FilePathsBase v0.9.24 [1fa38f19] + Format v1.3.7 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.8 ⌃ [28b8d3ca] + GR v0.73.7 [a2bd30eb] + Graphics v1.1.3 [3955a311] + GridLayoutBase v0.11.1 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.10.17 [34004b35] + HypergeometricFunctions v0.3.28 ⌅ [d1acc4aa] + IntervalArithmetic v0.22.36 [f1662d9f] + Isoband v0.1.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [1019f520] + JLFzf v0.1.11 [682c06a0] + JSON v0.21.4 [5ab0869b] + KernelDensity v0.6.10 [2e889f3d] + LaMEM v0.4.7 [23fbe1c1] + Latexify v0.16.9 [e6f89c97] + LoggingExtras v1.1.0 [ee78f7c6] + Makie v0.24.5 [0a4f8689] + MathTeXEngine v0.6.6 [739be429] + MbedTLS v1.1.9 [442fdcdd] + Measures v0.3.2 [510215fc] + Observables v0.5.5 [4d8831e6] + OpenSSL v1.5.0 [90014a1f] + PDMats v0.11.35 [19eb6ba3] + Packing v0.5.1 [69de0a69] + Parsers v2.8.3 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.3 [91a5bcdd] + Plots v1.40.18 [647866c9] + PolygonOps v0.1.2 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [01d81517] + RecipesPipeline v0.6.12 [05181044] + RelocatableFolders v1.0.1 [79098fc4] + Rmath v0.8.0 [5eaf0fd0] + RoundingEmulator v0.2.1 [6c6a2e73] + Scratch v1.3.0 [65257c39] + ShaderAbstractions v0.5.0 [992d4aef] + Showoff v1.0.3 [73760f76] + SignedDistanceFields v0.4.0 [777ac1f9] + SimpleBufferStream v1.2.0 [860ef19b] + StableRNGs v1.0.3 [4c63d2b9] + StatsFuns v1.5.0 [09ab397b] + StructArrays v0.7.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [981d1d27] + TriplotBase v0.1.0 [5c2747f8] + URIs v1.6.1 [1cfade01] + UnicodeFun v0.4.1 [45397f5d] + UnitfulLatexify v1.7.0 [41fe7b60] + Unzip v0.2.0 ⌃ [ea906314] ↓ WhereTheWaterFlows v0.11.1 ⇒ v0.10.2 [4e9b3aee] + CRlibm_jll v1.0.1+0 [ee1fde0b] + Dbus_jll v1.16.2+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 ⌅ [b22a6f82] ↓ FFMPEG_jll v7.1.1+0 ⇒ v6.1.3+0 [f5851436] + FFTW_jll v3.3.11+0 [0656b61e] + GLFW_jll v3.4.0+2 ⌅ [d2c73de3] + GR_jll v0.73.7+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.6+2 [6cdc7f73] + OpenBLASConsistentFPCSR_jll v0.3.29+0 [36c8627f] + Pango_jll v1.56.3+0 ⌅ [c0090381] + Qt6Base_jll v6.7.1+1 ⌅ [629bc702] + Qt6Declarative_jll v6.7.1+2 ⌅ [ce943373] + Qt6ShaderTools_jll v6.7.1+1 ⌃ [e99dba38] + Qt6Wayland_jll v6.7.1+1 [f50d1b31] + Rmath_jll v0.5.1+0 [a44049a8] + Vulkan_Loader_jll v1.3.243+0 [a2964d1f] + Wayland_jll v1.24.0+0 [f67eecfb] + Xorg_libICE_jll v1.1.2+0 [c834827a] + Xorg_libSM_jll v1.2.6+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.1+0 [a51aa0fd] + Xorg_libXi_jll v1.8.3+0 [d1454406] + Xorg_libXinerama_jll v1.1.6+0 [ec84b674] + Xorg_libXrandr_jll v1.5.5+0 [cc61e674] + Xorg_libxkbfile_jll v1.1.3+0 [e920d4aa] + Xorg_xcb_util_cursor_jll v0.1.5+0 [12413925] + Xorg_xcb_util_image_jll v0.4.1+0 [2def613f] + Xorg_xcb_util_jll v0.4.1+0 [975044d2] + Xorg_xcb_util_keysyms_jll v0.4.1+0 [0d47668e] + Xorg_xcb_util_renderutil_jll v0.3.10+0 [c22f9ab0] + Xorg_xcb_util_wm_jll v0.4.2+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0 [35ca27e7] + eudev_jll v3.2.14+0 [214eeab7] + fzf_jll v0.61.1+0 [9a68df92] + isoband_jll v0.2.3+0 [1183f4f0] + libdecor_jll v0.2.2+0 [2db6ffa8] + libevdev_jll v1.13.4+0 [36db933b] + libinput_jll v1.28.1+0 [009596ad] + mtdev_jll v1.1.7+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [d8fb68d0] + xkbcommon_jll v1.9.2+0 [8bf52ea8] + CRC32c v1.11.0 [4607b0f0] + SuiteSparse Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_OJEUUO/Project.toml` [13f3f980] CairoMakie v0.15.5 [8bb1440f] DelimitedFiles v1.9.1 [ffbed154] DocStringExtensions v0.9.5 [e018b62d] GeoParams v0.7.6 [3700c31b] GeophysicalModelGenerator v0.7.14 [c27321d9] Glob v1.3.1 ⌅ [a98d9a8b] Interpolations v0.15.1 [2e889f3d] LaMEM v0.4.7 [9c8b4983] LightXML v0.9.2 [da04e1cc] MPI v0.20.23 [3da0fdf6] MPIPreferences v0.1.11 [91a5bcdd] Plots v1.40.18 [dc215faf] ReadVTK v0.2.5 [10745b16] Statistics v1.11.1 [64499a7a] WriteVTK v1.21.2 ⌅ [15d6fa20] LaMEM_jll v2.1.4+0 ⌅ [7cb0a576] MPICH_jll v4.1.2+1 [8dfed614] Test v1.11.0 Status `/tmp/jl_OJEUUO/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [18cc8868] 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v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 11570.0 ms ✓ PETSc_jll 5965.5 ms ✓ GDAL_jll 5707.6 ms ✓ LaMEM_jll Info Given LaMEM was explicitly requested, output will be shown live  WARNING: Method definition piece(ReadVTK.VTKFile) in module ReadVTK at /home/pkgeval/.julia/packages/ReadVTK/cMvIT/src/ReadVTK.jl:186 overwritten in module IO_functions at /home/pkgeval/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:279. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 19919.3 ms ? LaMEM 3 dependencies successfully precompiled in 47 seconds. 273 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 1 dependency had output during precompilation: ┌ LaMEM │ [Output was shown above] └ WARNING: Method definition piece(ReadVTK.VTKFile) in module ReadVTK at /home/pkgeval/.julia/packages/ReadVTK/cMvIT/src/ReadVTK.jl:186 overwritten in module IO_functions at /home/pkgeval/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:279. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: Method definition piece(ReadVTK.VTKFile) in module ReadVTK at /home/pkgeval/.julia/packages/ReadVTK/cMvIT/src/ReadVTK.jl:186 overwritten in module IO_functions at /home/pkgeval/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:279. Precompiling packages... 14267.6 ms ✓ MPI 1 dependency successfully precompiled in 14 seconds. 41 already precompiled. Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 2 Time step : 1. [Myr] Minimum time step : 0.2 [Myr] Maximum time step : 10. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 16, 16] Number of cells : 4096 Number of faces : 13056 Maximum cell aspect ratio : 2.00000 Lower coordinate bounds [bx, by, bz] : [-2., -1., -1.] Upper coordinate bounds [ex, ey, ez] : [2., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- sphere (dens) : rho = 3200. [kg/m^3] (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.0317561 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress tensor @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Preconditioner type : coupled Galerkin geometric multigrid Global coarse grid [nx,ny,nz] : [8, 8, 8] Local coarse grid [nx,ny,nz] : [8, 8, 8] Number of multigrid levels : 2 -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : multigrid Multigrid smoother levels KSP : chebyshev Multigrid smoother levels PC : sor Number of smoothening steps : 10 Coarse level KSP : preonly Coarse level PC : lu Coarse level solver package : (null) -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 3.656395025301e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 5 1 SNES Function norm 9.765816215863e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.650542 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.291310889682e-05 |Div|_2 = 2.886140529488e-04 Momentum: |mRes|_2 = 9.761550506474e-03 -------------------------------------------------------------------------- Saving output ... done (0.00380141 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 1.00000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 2.685113961409e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 15 1 SNES Function norm 4.489500644001e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.740132 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.406409583179e-06 |Div|_2 = 5.437966746000e-06 Momentum: |mRes|_2 = 4.489497350596e-03 -------------------------------------------------------------------------- Actual time step : 1.10000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.1043e-02 s -------------------------------------------------------------------------- Saving output ... done (0.0033039 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 1.61737 (sec) -------------------------------------------------------------------------- Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 3 Time step : 1. [Myr] Minimum time step : 1e-05 [Myr] Maximum time step : 10. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 16, 16] Number of cells : 4096 Number of faces : 13056 Maximum cell aspect ratio : 2.00000 Lower coordinate bounds [bx, by, bz] : [-2., -1., -1.] Upper coordinate bounds [ex, ey, ez] : [2., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- sphere (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of velocity boxes : 1 Velocity box # : 0 Box center : 0., 0., 0. [km] Box width : 1., 1., 1. [km] X-velocity : 1. [cm/yr] Top boundary temperature : 0. [C] Bottom boundary temperature : 20. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.0285127 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Preconditioner type : coupled Galerkin geometric multigrid Global coarse grid [nx,ny,nz] : [8, 8, 8] Local coarse grid [nx,ny,nz] : [8, 8, 8] Number of multigrid levels : 2 -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : multigrid Multigrid smoother levels KSP : chebyshev Multigrid smoother levels PC : sor Number of smoothening steps : 10 Coarse level KSP : preonly Coarse level PC : lu Coarse level solver package : (null) -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 3.647420796124e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 7.297937424597e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.570022 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.461331555372e-06 |Div|_2 = 2.127815511859e-04 Momentum: |mRes|_2 = 7.294834793524e-03 -------------------------------------------------------------------------- Saving output ... done (0.0031306 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 1.00000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 5.382901817483e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 10 1 SNES Function norm 3.188552971360e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.522319 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.448585401899e-05 |Div|_2 = 1.340409029960e-03 Momentum: |mRes|_2 = 3.185734308993e-02 -------------------------------------------------------------------------- Actual time step : 0.01250 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 4692 markers and merged 24 markers in 1.7755e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00249147 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.01250000 [Myr] Tentative time step : 0.01250000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 3.188552971358e-02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 11 1 SNES Function norm 1.891353888714e-07 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.563732 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.163910967605e-09 |Div|_2 = 1.007415909660e-08 Momentum: |mRes|_2 = 1.888669019231e-07 -------------------------------------------------------------------------- Actual time step : 0.01250 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 8386 markers and merged 136 markers in 2.2839e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00257792 sec) -------------------------------------------------------------------------- ================================= STEP 3 ================================= -------------------------------------------------------------------------- Current time : 0.02500000 [Myr] Tentative time step : 0.01250000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.891353882404e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 13 1 SNES Function norm 3.806690487543e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.602136 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.732544348338e-15 |Div|_2 = 6.229370514023e-14 Momentum: |mRes|_2 = 3.806180757958e-12 -------------------------------------------------------------------------- Actual time step : 0.01250 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 9921 markers and merged 252 markers in 2.8241e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00260808 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 2.75855 (sec) -------------------------------------------------------------------------- Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 100000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 30 Time step : 0.01 [Myr] Minimum time step : 1e-05 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 5 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [64, 1, 64] Number of cells : 4096 Number of faces : 16512 Maximum cell aspect ratio : 1.28000 Lower coordinate bounds [bx, by, bz] : [-500., -10., -1000.] Upper coordinate bounds [ex, ey, ez] : [500., 10., 50.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- Air (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+22 [Pa*s] Bd = 5e-23 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1e+06 [J/kg/K] k = 100. [W/m/k] Phase ID : 1 -- OCrust (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+24 [Pa*s] Bd = 5e-25 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 2 -- Omantle (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 3 -- Umantle (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 4 -- Plume (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 5 -- Lmantle (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+21 [Pa*s] Bd = 5e-22 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 6 -- Plume2 (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] Phase ID : 7 -- Umantle2 (dens) : rho = 3300. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] (temp) : alpha = 3e-05 [1/K] Cp = 1050. [J/kg/K] k = 3. [W/m/k] -------------------------------------------------------------------------- Phase Transition laws: -------------------------------------------------------------------------- Phase Transition [0] : Constant Parameter : T Transition Value : 1200.000 Phase Above : 3 Phase Below : 2 Direction : BothWays Phase Transition [1] : Constant Parameter : Depth Transition Value : -400.000 Phase Above : 6 Phase Below : 4 Direction : BelowToAbove Reset Parameter : APS Phase Transition [2] : Clapeyron Transition law : Mantle_Transition_660km # Equations : 1 [ P = P0 + gamma*(T-T0) ] eq[0] : gamma = -2.50e+00 [MPa/C], P0 = 2.30e+10 [Pa], T0 = 1667.0 [deg C] Phase Above : 5 Phase Below : 3 Direction : BothWays Phase Transition [3] : Box Box Bounds : [200.0; 400.0; -100.0; 100.0; -1000.0; -500.0] [km] Box Vicinity : Use all particles to check inside/outside Linear Temp; bot T : 1300.0 [C] Linear Temp; top T : 20.0 [C] Phase Outside : 3 Phase Inside : 7 Direction : BothWays Reset Parameter : APS Adjusting density values due to phase transitions: -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 1 0 Open top boundary @ Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.0282578 sec) -------------------------------------------------------------------------- Output parameters: Output file name : Plume_PhaseTransitions_new Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- Initializing pressure with lithostatic pressure ... done (0.00167895 sec) -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 1.985087139977e+04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.594719909526e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.223953 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.736320446684e-03 |Div|_2 = 6.379041312826e-02 Momentum: |mRes|_2 = 1.672770938997e-02 -------------------------------------------------------------------------- Saving output ... done (0.00410377 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.01000000 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0217868 sec) -------------------------------------------------------------------------- 0 SNES Function norm 8.903947944260e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.024649811614e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.13119 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.935922950757e-06 |Div|_2 = 6.296964037381e-05 Momentum: |mRes|_2 = 6.024320723283e-03 -------------------------------------------------------------------------- Actual time step : 0.01100 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 441 markers and merged 0 markers in 1.2617e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00378117 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.01100000 [Myr] Tentative time step : 0.01100000 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0228254 sec) -------------------------------------------------------------------------- 0 SNES Function norm 8.034506122548e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.042794808280e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.131343 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.100791055896e-06 |Div|_2 = 2.663022244943e-05 Momentum: |mRes|_2 = 3.042678273585e-03 -------------------------------------------------------------------------- Actual time step : 0.01210 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1089 markers and merged 0 markers in 1.2327e-02 s -------------------------------------------------------------------------- ================================= STEP 3 ================================= -------------------------------------------------------------------------- Current time : 0.02310000 [Myr] Tentative time step : 0.01210000 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0233175 sec) -------------------------------------------------------------------------- 0 SNES Function norm 5.318612913611e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.512638742054e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.131692 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.382602357380e-06 |Div|_2 = 8.871198692501e-06 Momentum: |mRes|_2 = 4.512630022295e-03 -------------------------------------------------------------------------- Actual time step : 0.01271 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1648 markers and merged 0 markers in 1.3019e-02 s -------------------------------------------------------------------------- ================================= STEP 4 ================================= -------------------------------------------------------------------------- Current time : 0.03580813 [Myr] Tentative time step : 0.01270813 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0250647 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.935573222169e+04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.347072227143e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.131896 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.247047888856e-06 |Div|_2 = 7.447201618764e-06 Momentum: |mRes|_2 = 2.347072108994e-02 -------------------------------------------------------------------------- Actual time step : 0.01317 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2283 markers and merged 0 markers in 1.3849e-02 s -------------------------------------------------------------------------- ================================= STEP 5 ================================= -------------------------------------------------------------------------- Current time : 0.04898011 [Myr] Tentative time step : 0.01317198 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0231002 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.589238590905e+04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.013070382147e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.130611 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.805947853928e-06 |Div|_2 = 3.560205426322e-06 Momentum: |mRes|_2 = 1.013070319589e-02 -------------------------------------------------------------------------- Actual time step : 0.01348 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2457 markers and merged 3 markers in 1.4548e-02 s -------------------------------------------------------------------------- Saving output ... done (0.0035844 sec) -------------------------------------------------------------------------- ================================= STEP 6 ================================= -------------------------------------------------------------------------- Current time : 0.06246502 [Myr] Tentative time step : 0.01348490 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0234186 sec) -------------------------------------------------------------------------- 0 SNES Function norm 7.105193382543e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.154888385840e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.135742 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.625893629040e-06 |Div|_2 = 7.876091187835e-06 Momentum: |mRes|_2 = 1.154888117274e-02 -------------------------------------------------------------------------- Actual time step : 0.01377 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2718 markers and merged 21 markers in 1.6013e-02 s -------------------------------------------------------------------------- ================================= STEP 7 ================================= -------------------------------------------------------------------------- Current time : 0.07623411 [Myr] Tentative time step : 0.01376910 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0239787 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.042373659728e+04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.510094877904e-02 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.130018 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.794971457089e-06 |Div|_2 = 6.312594508142e-06 Momentum: |mRes|_2 = 1.510094745962e-02 -------------------------------------------------------------------------- Actual time step : 0.01399 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3179 markers and merged 33 markers in 1.6671e-02 s -------------------------------------------------------------------------- ================================= STEP 8 ================================= -------------------------------------------------------------------------- Current time : 0.09022767 [Myr] Tentative time step : 0.01399356 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0247843 sec) -------------------------------------------------------------------------- 0 SNES Function norm 2.871444769587e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.658430341970e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.129412 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.403254490275e-06 |Div|_2 = 5.498127413823e-06 Momentum: |mRes|_2 = 1.658421228085e-03 -------------------------------------------------------------------------- Actual time step : 0.01398 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3119 markers and merged 57 markers in 1.7489e-02 s -------------------------------------------------------------------------- ================================= STEP 9 ================================= -------------------------------------------------------------------------- Current time : 0.10421032 [Myr] Tentative time step : 0.01398265 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0316564 sec) -------------------------------------------------------------------------- 0 SNES Function norm 4.449583974129e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.322063249770e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.133078 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.449661887811e-06 |Div|_2 = 5.875773877495e-06 Momentum: |mRes|_2 = 5.322060006223e-03 -------------------------------------------------------------------------- Actual time step : 0.01428 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3466 markers and merged 90 markers in 1.8639e-02 s -------------------------------------------------------------------------- ================================ STEP 10 ================================= -------------------------------------------------------------------------- Current time : 0.11849403 [Myr] Tentative time step : 0.01428371 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0262782 sec) -------------------------------------------------------------------------- 0 SNES Function norm 4.706865316454e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.788517436845e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.13483 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.971033394610e-06 |Div|_2 = 3.839433186097e-06 Momentum: |mRes|_2 = 2.788514793639e-03 -------------------------------------------------------------------------- Actual time step : 0.01439 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3661 markers and merged 117 markers in 2.1414e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00377211 sec) -------------------------------------------------------------------------- ================================ STEP 11 ================================= -------------------------------------------------------------------------- Current time : 0.13288211 [Myr] Tentative time step : 0.01438807 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0338579 sec) -------------------------------------------------------------------------- 0 SNES Function norm 8.991485040991e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.694136165734e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.138448 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.383957079883e-06 |Div|_2 = 5.825431414762e-06 Momentum: |mRes|_2 = 8.694134214094e-03 -------------------------------------------------------------------------- Actual time step : 0.01458 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3219 markers and merged 150 markers in 2.0384e-02 s -------------------------------------------------------------------------- ================================ STEP 12 ================================= -------------------------------------------------------------------------- Current time : 0.14746103 [Myr] Tentative time step : 0.01457892 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0271392 sec) -------------------------------------------------------------------------- 0 SNES Function norm 5.473879258981e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.560793671473e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.131992 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.258375541324e-06 |Div|_2 = 2.992576486504e-06 Momentum: |mRes|_2 = 3.560792413957e-03 -------------------------------------------------------------------------- Actual time step : 0.01463 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3311 markers and merged 161 markers in 2.1622e-02 s -------------------------------------------------------------------------- ================================ STEP 13 ================================= -------------------------------------------------------------------------- Current time : 0.16209081 [Myr] Tentative time step : 0.01462979 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0282972 sec) -------------------------------------------------------------------------- 0 SNES Function norm 4.275685042272e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.103768241593e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.134107 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.613569589706e-06 |Div|_2 = 3.362504229368e-06 Momentum: |mRes|_2 = 5.103767133937e-03 -------------------------------------------------------------------------- Actual time step : 0.01468 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3513 markers and merged 249 markers in 2.3165e-02 s -------------------------------------------------------------------------- ================================ STEP 14 ================================= -------------------------------------------------------------------------- Current time : 0.17677097 [Myr] Tentative time step : 0.01468015 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0301142 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.350290833178e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.726032134112e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.132682 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.747924524954e-06 |Div|_2 = 6.606745373525e-06 Momentum: |mRes|_2 = 1.726019489723e-03 -------------------------------------------------------------------------- Actual time step : 0.01480 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3237 markers and merged 241 markers in 2.4254e-02 s -------------------------------------------------------------------------- ================================ STEP 15 ================================= -------------------------------------------------------------------------- Current time : 0.19157476 [Myr] Tentative time step : 0.01480379 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0319336 sec) -------------------------------------------------------------------------- 0 SNES Function norm 2.674533097998e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.036490753468e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.134141 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.276829055403e-06 |Div|_2 = 5.026127715309e-06 Momentum: |mRes|_2 = 3.036486593736e-03 -------------------------------------------------------------------------- Actual time step : 0.01474 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3166 markers and merged 301 markers in 2.4314e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00380206 sec) -------------------------------------------------------------------------- ================================ STEP 16 ================================= -------------------------------------------------------------------------- Current time : 0.20631027 [Myr] Tentative time step : 0.01473551 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0297328 sec) -------------------------------------------------------------------------- 0 SNES Function norm 3.214195749760e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.255579919968e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.131688 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 7.215428179386e-07 |Div|_2 = 1.542132189085e-06 Momentum: |mRes|_2 = 1.255578972927e-03 -------------------------------------------------------------------------- Actual time step : 0.01494 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2829 markers and merged 348 markers in 2.5402e-02 s -------------------------------------------------------------------------- ================================ STEP 17 ================================= -------------------------------------------------------------------------- Current time : 0.22125036 [Myr] Tentative time step : 0.01494009 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0336411 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.415360965464e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.397087471237e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.132828 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.282432859018e-06 |Div|_2 = 2.980539196763e-06 Momentum: |mRes|_2 = 1.397084291900e-03 -------------------------------------------------------------------------- Actual time step : 0.01505 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 3076 markers and merged 366 markers in 2.6168e-02 s -------------------------------------------------------------------------- ================================ STEP 18 ================================= -------------------------------------------------------------------------- Current time : 0.23629778 [Myr] Tentative time step : 0.01504742 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0324518 sec) -------------------------------------------------------------------------- 0 SNES Function norm 3.271567359873e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.069485309642e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.129719 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.690801147980e-06 |Div|_2 = 4.153467007522e-06 Momentum: |mRes|_2 = 3.069482499514e-03 -------------------------------------------------------------------------- Actual time step : 0.01518 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2831 markers and merged 351 markers in 2.5841e-02 s -------------------------------------------------------------------------- ================================ STEP 19 ================================= -------------------------------------------------------------------------- Current time : 0.25147556 [Myr] Tentative time step : 0.01517778 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0346297 sec) -------------------------------------------------------------------------- 0 SNES Function norm 8.407677792888e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.478870555625e-04 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.130952 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.034064185168e-06 |Div|_2 = 1.427767384948e-06 Momentum: |mRes|_2 = 3.478841256917e-04 -------------------------------------------------------------------------- Actual time step : 0.01517 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2958 markers and merged 373 markers in 2.7654e-02 s -------------------------------------------------------------------------- ================================ STEP 20 ================================= -------------------------------------------------------------------------- Current time : 0.26665036 [Myr] Tentative time step : 0.01517480 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0324029 sec) -------------------------------------------------------------------------- 0 SNES Function norm 3.454633636616e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.597346615330e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.129345 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.757287793226e-06 |Div|_2 = 4.633531387496e-06 Momentum: |mRes|_2 = 4.597344280328e-03 -------------------------------------------------------------------------- Actual time step : 0.01529 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2615 markers and merged 348 markers in 2.6877e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00344854 sec) -------------------------------------------------------------------------- ================================ STEP 21 ================================= -------------------------------------------------------------------------- Current time : 0.28194393 [Myr] Tentative time step : 0.01529357 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0347523 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.662243615071e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.457572792318e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.13325 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.549740517276e-06 |Div|_2 = 2.356606806332e-06 Momentum: |mRes|_2 = 1.457570887233e-03 -------------------------------------------------------------------------- Actual time step : 0.01530 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2223 markers and merged 464 markers in 3.2185e-02 s -------------------------------------------------------------------------- ================================ STEP 22 ================================= -------------------------------------------------------------------------- Current time : 0.29723979 [Myr] Tentative time step : 0.01529587 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0344197 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.666098628745e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.181579776420e-04 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.132779 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.105071822966e-07 |Div|_2 = 4.345251602430e-07 Momentum: |mRes|_2 = 2.181575448998e-04 -------------------------------------------------------------------------- Actual time step : 0.01536 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2358 markers and merged 388 markers in 2.8422e-02 s -------------------------------------------------------------------------- ================================ STEP 23 ================================= -------------------------------------------------------------------------- Current time : 0.31259987 [Myr] Tentative time step : 0.01536008 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0338764 sec) -------------------------------------------------------------------------- 0 SNES Function norm 6.520633752479e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.585323132561e-04 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.131861 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.074607750498e-07 |Div|_2 = 1.241583485338e-06 Momentum: |mRes|_2 = 3.585301634720e-04 -------------------------------------------------------------------------- Actual time step : 0.01533 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2052 markers and merged 489 markers in 2.7612e-02 s -------------------------------------------------------------------------- ================================ STEP 24 ================================= -------------------------------------------------------------------------- Current time : 0.32792814 [Myr] Tentative time step : 0.01532827 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0339296 sec) -------------------------------------------------------------------------- 0 SNES Function norm 7.544791942376e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.645518857154e-04 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.128643 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.963381580539e-06 |Div|_2 = 3.578799441957e-06 Momentum: |mRes|_2 = 6.645422492230e-04 -------------------------------------------------------------------------- Actual time step : 0.01533 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1961 markers and merged 581 markers in 2.8412e-02 s -------------------------------------------------------------------------- ================================ STEP 25 ================================= -------------------------------------------------------------------------- Current time : 0.34326050 [Myr] Tentative time step : 0.01533236 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0357131 sec) -------------------------------------------------------------------------- 0 SNES Function norm 2.428135768392e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.940813617477e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.132995 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.323266839596e-06 |Div|_2 = 2.195414288975e-06 Momentum: |mRes|_2 = 1.940812375769e-03 -------------------------------------------------------------------------- Actual time step : 0.01535 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 2019 markers and merged 548 markers in 3.2011e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00424521 sec) -------------------------------------------------------------------------- ================================ STEP 26 ================================= -------------------------------------------------------------------------- Current time : 0.35861463 [Myr] Tentative time step : 0.01535414 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0538825 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.789866730496e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.615523047067e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.135759 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.855295772624e-06 |Div|_2 = 3.281914795005e-06 Momentum: |mRes|_2 = 1.615519713479e-03 -------------------------------------------------------------------------- Actual time step : 0.01538 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1918 markers and merged 626 markers in 2.9177e-02 s -------------------------------------------------------------------------- ================================ STEP 27 ================================= -------------------------------------------------------------------------- Current time : 0.37399938 [Myr] Tentative time step : 0.01538475 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.036399 sec) -------------------------------------------------------------------------- 0 SNES Function norm 5.889560968213e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.610205639529e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.131626 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.735301883940e-07 |Div|_2 = 1.052907877585e-06 Momentum: |mRes|_2 = 1.610205295283e-03 -------------------------------------------------------------------------- Actual time step : 0.01541 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1756 markers and merged 594 markers in 3.0390e-02 s -------------------------------------------------------------------------- ================================ STEP 28 ================================= -------------------------------------------------------------------------- Current time : 0.38940579 [Myr] Tentative time step : 0.01540641 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0397396 sec) -------------------------------------------------------------------------- 0 SNES Function norm 6.172228468350e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.191147607294e-04 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.13261 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.224928623258e-06 |Div|_2 = 5.311699400284e-06 Momentum: |mRes|_2 = 5.190875847645e-04 -------------------------------------------------------------------------- Actual time step : 0.01550 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1699 markers and merged 628 markers in 3.0991e-02 s -------------------------------------------------------------------------- ================================ STEP 29 ================================= -------------------------------------------------------------------------- Current time : 0.40491046 [Myr] Tentative time step : 0.01550467 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0352746 sec) -------------------------------------------------------------------------- 0 SNES Function norm 2.295216675739e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.561757840034e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.131077 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.107123301842e-06 |Div|_2 = 4.128857669323e-06 Momentum: |mRes|_2 = 1.561752382243e-03 -------------------------------------------------------------------------- Actual time step : 0.01561 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1661 markers and merged 673 markers in 3.0922e-02 s -------------------------------------------------------------------------- ================================ STEP 30 ================================= -------------------------------------------------------------------------- Current time : 0.42052352 [Myr] Tentative time step : 0.01561306 [Myr] -------------------------------------------------------------------------- Phase_Transition ... done (0.0352747 sec) -------------------------------------------------------------------------- 0 SNES Function norm 1.803452452713e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.966698890739e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.130918 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.558964615428e-06 |Div|_2 = 3.788307440217e-06 Momentum: |mRes|_2 = 1.966695242167e-03 -------------------------------------------------------------------------- Actual time step : 0.01574 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 1519 markers and merged 607 markers in 3.0698e-02 s -------------------------------------------------------------------------- Saving output ... done (0.0042265 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 10.2388 (sec) -------------------------------------------------------------------------- pwd() = "/home/pkgeval/.julia/packages/LaMEM/M6C0P/test" readdir() = ["CreateMarkers_Subduction_Linear_FreeSlip_parallel.jl", "Rhyolite.in", "input_files", "markers", "mesh_refinement_test.jl", "read_logfile.jl", "read_timestep.jl", "runLaMEM.jl", "run_lamem_save_grid_test.jl", "runtests.jl", "test_GeoParams_integration.jl", "test_compression.jl", "test_erosion.jl", "test_examples.jl", "test_julia_setup_phase_diagrams.jl", "test_julia_setups.jl", "test_sedimentation.jl"] Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 100000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 4 Time step : 0.04 [Myr] Minimum time step : 0.004 [Myr] Maximum time step : 0.2 [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 1, 16] Number of cells : 256 Number of faces : 1056 Maximum cell aspect ratio : 6.25000 Lower coordinate bounds [bx, by, bz] : [-100., -1., -100.] Upper coordinate bounds [ex, ey, ez] : [100., 1., 0.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- heter - Employing phase diagram: /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/Rhyolite (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] Phase ID : 0 -- matrix - Employing phase diagram: /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/Rhyolite (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Top boundary temperature : 0. [C] Bottom boundary temperature : 989.583 [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.00199164 sec) -------------------------------------------------------------------------- Phase Diagrams: Diagrams employed for phases : 0: P range=[0.2-20.2] kbar, T range = [386.4-2086.4] K 1: -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ Melt fraction @ Fluid density @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 3.934530286730e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.581262562749e+02 1 PICARD ||F||/||F0||=4.018936e-02 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 2 SNES Function norm 1.117627025004e+01 2 MMFD ||F||/||F0||=2.840560e-03 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 3 SNES Function norm 1.432330149671e-01 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 3 SNES solution time : 0.0138957 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.002321873040e-09 |Div|_2 = 5.644441176775e-08 Momentum: |mRes|_2 = 1.432330149671e-01 -------------------------------------------------------------------------- Saving output ... done (0.000911091 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.04000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 3.050235816760e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.039676666126e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 0.00533281 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.069414583551e-18 |Div|_2 = 3.162302608719e-17 Momentum: |mRes|_2 = 3.039676666126e-03 -------------------------------------------------------------------------- Actual time step : 0.04400 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.3725e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000744262 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.04400000 [Myr] Tentative time step : 0.04400000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 3.040264438959e-03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 6.434728602950e-05 1 PICARD ||F||/||F0||=2.116503e-02 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 2 SNES Function norm 1.391731242115e-06 2 MMFD ||F||/||F0||=4.577665e-04 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 3 SNES Function norm 3.775960634440e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 3 SNES solution time : 0.0160479 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 7.030373462211e-20 |Div|_2 = 2.243793518119e-19 Momentum: |mRes|_2 = 3.775960634440e-12 -------------------------------------------------------------------------- Actual time step : 0.04840 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.2827e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000710633 sec) -------------------------------------------------------------------------- ================================= STEP 3 ================================= -------------------------------------------------------------------------- Current time : 0.09240000 [Myr] Tentative time step : 0.04840000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 2.883181848925e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 7.210941128243e-07 1 PICARD ||F||/||F0||=2.501036e-02 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 2 SNES Function norm 1.472232176353e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00852818 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.343431206158e-15 |Div|_2 = 7.266627062028e-15 Momentum: |mRes|_2 = 1.472232176353e-08 -------------------------------------------------------------------------- Actual time step : 0.05324 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.2305e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000762672 sec) -------------------------------------------------------------------------- ================================= STEP 4 ================================= -------------------------------------------------------------------------- Current time : 0.14564000 [Myr] Tentative time step : 0.05324000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 3.170864950966e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 7.927997956283e-07 1 PICARD ||F||/||F0||=2.500264e-02 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 2 SNES Function norm 1.618712375651e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00860598 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.477117569190e-15 |Div|_2 = 7.988983672080e-15 Momentum: |mRes|_2 = 1.618712375651e-08 -------------------------------------------------------------------------- Actual time step : 0.05856 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.4677e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000941481 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.107603 (sec) -------------------------------------------------------------------------- Saved file: Model3D.vts cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 2 Time step : 1. [Myr] Minimum time step : 0.2 [Myr] Maximum time step : 10. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 1, 16] Number of cells : 256 Number of faces : 1056 Maximum cell aspect ratio : 2.00000 Lower coordinate bounds [bx, by, bz] : [-2., -0.09375, -1.] Upper coordinate bounds [ex, ey, ez] : [2., 0.09375, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- sphere (dens) : rho = 3200. [kg/m^3] (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : geometric primitives Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise Background phase ID : 0 -------------------------------------------------------------------------- Reading geometric primitives ... done (0.000145049 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 9.118551990311e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.116028797339e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00679778 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.174184490476e-18 |Div|_2 = 5.984135402956e-18 Momentum: |mRes|_2 = 1.116028797323e-12 -------------------------------------------------------------------------- Saving output ... done (0.000813542 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 1.00000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.116028797339e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.979851535660e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00383483 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.877881017396e-30 |Div|_2 = 3.192494526470e-29 Momentum: |mRes|_2 = 4.979851535660e-14 -------------------------------------------------------------------------- Actual time step : 1.10000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.3457e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000777832 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0322036 (sec) -------------------------------------------------------------------------- Saved file: Model3D.vts cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 2 Time step : 1. [Myr] Minimum time step : 0.2 [Myr] Maximum time step : 10. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 1, 16] Number of cells : 256 Number of faces : 1056 Maximum cell aspect ratio : 2.00000 Lower coordinate bounds [bx, by, bz] : [-2., -0.09375, -1.] Upper coordinate bounds [ex, ey, ez] : [2., 0.09375, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- sphere (dens) : rho = 3200. [kg/m^3] (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : geometric primitives Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise Background phase ID : 0 -------------------------------------------------------------------------- Reading geometric primitives ... done (0.000547374 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 9.118551990311e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.116028797339e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00682711 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.174184490476e-18 |Div|_2 = 5.984135402956e-18 Momentum: |mRes|_2 = 1.116028797323e-12 -------------------------------------------------------------------------- Saving output ... done (0.00100305 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 1.00000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.116028797339e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.979851535660e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0037939 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.877881017396e-30 |Div|_2 = 3.192494526470e-29 Momentum: |mRes|_2 = 4.979851535660e-14 -------------------------------------------------------------------------- Actual time step : 1.10000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.1929e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000830872 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.031625 (sec) -------------------------------------------------------------------------- cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/input_files/FallingBlock_Multigrid.dat Adding PETSc option: -snes_type ksponly Adding PETSc option: -js_ksp_monitor Adding PETSc option: -crs_pc_type bjacobi Finished parsing input file -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [ ] Maximum number of steps : 1 Time step : 10. [ ] Minimum time step : 1e-05 [ ] Maximum time step : 100. [ ] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.5 Output time step : 0.2 [ ] Output every [n] steps : 1 Output [n] initial steps : 1 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [32, 32, 32] Number of cells : 32768 Number of faces : 101376 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [0., 0., 0.] Upper coordinate bounds [ex, ey, ez] : [1., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 (dens) : rho = 1. [ ] (diff) : eta = 1. [ ] Bd = 0.5 [ ] Phase ID : 1 (dens) : rho = 2. [ ] (diff) : eta = 100. [ ] Bd = 0.005 [ ] Phase ID : 2 (dens) : rho = 2. [ ] (diff) : eta = 1000. [ ] Bd = 0.0005 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -1.] [ ] Surface stabilization (FSSA) : 1. Use lithostatic pressure for creep @ Minimum viscosity : 0.001 [ ] Maximum viscosity : 1e+12 [ ] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : geometric primitives Velocity interpolation scheme : empirical STAGP (STAG + pressure points) Marker control type : pure AVD for all control volumes Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise Background phase ID : 0 Interpolation constant : 0.7 -------------------------------------------------------------------------- Reading geometric primitives ... done (0.0198516 sec) -------------------------------------------------------------------------- Output parameters: Output file name : FB_multigrid Write .pvd file : yes Phase @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Deviatoric stress second invariant @ Deviatoric strain rate tensor @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- AVD output parameters: Write .pvd file : yes AVD refinement factor : 3 -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Preconditioner type : coupled Galerkin geometric multigrid Global coarse grid [nx,ny,nz] : [4, 4, 4] Local coarse grid [nx,ny,nz] : [4, 4, 4] Number of multigrid levels : 4 -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : multigrid Multigrid smoother levels KSP : chebyshev Multigrid smoother levels PC : sor Number of smoothening steps : 10 Coarse level KSP : preonly Coarse level PC : bjacobi -------------------------------------------------------------------------- Saving output ... done (0.836788 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [ ] Tentative time step : 10.00000000 [ ] -------------------------------------------------------------------------- 0 SNES Function norm 1.832203177398e+02 0 PICARD ||F||/||F0||=1.000000e+00 Residual norms for js_ solve. 0 KSP Residual norm 2.121468833494e+01 1 KSP Residual norm 2.007312746141e+01 2 KSP Residual norm 1.436721786209e+01 3 KSP Residual norm 7.031413261028e+00 4 KSP Residual norm 2.361866279194e+00 5 KSP Residual norm 1.011785314253e+00 6 KSP Residual norm 4.700182839567e-01 7 KSP Residual norm 3.431392417306e-01 8 KSP Residual norm 1.759675422301e-01 9 KSP Residual norm 1.053716068647e-01 10 KSP Residual norm 9.342460424411e-02 11 KSP Residual norm 7.749792924243e-02 12 KSP Residual norm 5.192767141878e-02 13 KSP Residual norm 3.842800827033e-02 14 KSP Residual norm 1.589386132911e-02 15 KSP Residual norm 8.851034636242e-03 16 KSP Residual norm 4.554700539865e-03 17 KSP Residual norm 2.632601842348e-03 18 KSP Residual norm 1.311043982030e-03 19 KSP Residual norm 6.462411319589e-04 20 KSP Residual norm 3.583024905386e-04 21 KSP Residual norm 1.510300556884e-04 Linear js_ solve converged due to CONVERGED_RTOL iterations 21 1 SNES Function norm 1.371165827605e-02 -------------------------------------------------------------------------- SNES Convergence Reason : maximum iterations reached Number of iterations : 1 SNES solution time : 6.82523 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.351162529297e-05 |Div|_2 = 1.404433474462e-04 Momentum: |mRes|_2 = 1.371093900305e-02 -------------------------------------------------------------------------- Actual time step : 6.73129 [ ] -------------------------------------------------------------------------- Marker control [0]: (AVD YZED) injected 5 markers and deleted 0 markers in 1.1627e-03 s Marker control [0]: (AVD XZED) injected 7 markers and deleted 0 markers in 1.3094e-03 s Marker control [0]: (AVD XYED) injected 10 markers and deleted 0 markers in 1.7299e-03 s -------------------------------------------------------------------------- Saving output ... done (1.08514 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 10.6923 (sec) -------------------------------------------------------------------------- cores_compute = 4 Falling Block test on 4 cores failed cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/input_files/FallingBlock_DirectSolver.dat Adding PETSc option: -snes_type ksponly Adding PETSc option: -js_ksp_monitor Finished parsing input file -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [ ] Maximum number of steps : 2 Time step : 10. [ ] Minimum time step : 1e-05 [ ] Maximum time step : 100. [ ] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.5 Output time step : 0.2 [ ] Output every [n] steps : 1000 Output [n] initial steps : 1 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 16, 16] Number of cells : 4096 Number of faces : 13056 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [0., 0., 0.] Upper coordinate bounds [ex, ey, ez] : [1., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 (dens) : rho = 1. [ ] (diff) : eta = 1. [ ] Bd = 0.5 [ ] Phase ID : 1 (dens) : rho = 2. [ ] (diff) : eta = 100. [ ] Bd = 0.005 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -1.] [ ] Surface stabilization (FSSA) : 1. Use lithostatic pressure for creep @ Minimum viscosity : 0.001 [ ] Maximum viscosity : 1e+12 [ ] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : geometric primitives Velocity interpolation scheme : empirical STAGP (STAG + pressure points) Marker control type : pure AVD for all control volumes Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise Background phase ID : 0 Interpolation constant : 0.7 -------------------------------------------------------------------------- Reading geometric primitives ... done (0.00372369 sec) -------------------------------------------------------------------------- Output parameters: Output file name : FB_direct Write .pvd file : yes Phase @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ -------------------------------------------------------------------------- AVD output parameters: Write .pvd file : yes AVD refinement factor : 3 -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+03 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- Saving output ... done (0.104766 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [ ] Tentative time step : 10.00000000 [ ] -------------------------------------------------------------------------- 0 SNES Function norm 7.310266752999e+01 0 PICARD ||F||/||F0||=1.000000e+00 Residual norms for js_ solve. 0 KSP Residual norm 2.133540043787e+01 1 KSP Residual norm 1.859427686320e-02 2 KSP Residual norm 2.899733401244e-05 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.649877042896e-04 -------------------------------------------------------------------------- SNES Convergence Reason : maximum iterations reached Number of iterations : 1 SNES solution time : 2.32087 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.056315829386e-06 |Div|_2 = 3.650679845667e-05 Momentum: |mRes|_2 = 1.608980926960e-04 -------------------------------------------------------------------------- Actual time step : 7.69851 [ ] -------------------------------------------------------------------------- Marker control [0]: (AVD CELL) injected 1 markers and deleted 0 markers in 2.7727e-04 s Marker control [0]: (AVD YZED) injected 6 markers and deleted 0 markers in 9.2595e-04 s Marker control [0]: (AVD XZED) injected 8 markers and deleted 0 markers in 1.4969e-03 s Marker control [0]: (AVD XYED) injected 2 markers and deleted 0 markers in 4.1788e-04 s -------------------------------------------------------------------------- Saving output ... done (0.116125 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 7.69851107 [ ] Tentative time step : 7.69851107 [ ] -------------------------------------------------------------------------- 0 SNES Function norm 1.307661178463e+02 0 PICARD ||F||/||F0||=1.000000e+00 Residual norms for js_ solve. 0 KSP Residual norm 1.189285812726e+00 1 KSP Residual norm 1.071718651319e-03 2 KSP Residual norm 2.121756434235e-06 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.789132168326e-04 -------------------------------------------------------------------------- SNES Convergence Reason : maximum iterations reached Number of iterations : 1 SNES solution time : 2.31263 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.594135843254e-08 |Div|_2 = 7.340971818893e-07 Momentum: |mRes|_2 = 5.789127513924e-04 -------------------------------------------------------------------------- Actual time step : 8.25319 [ ] -------------------------------------------------------------------------- Marker control [0]: (AVD YZED) injected 5 markers and deleted 0 markers in 8.9209e-04 s Marker control [0]: (AVD XZED) injected 4 markers and deleted 0 markers in 6.9358e-04 s Marker control [0]: (AVD XYED) injected 7 markers and deleted 0 markers in 1.2356e-03 s -------------------------------------------------------------------------- Saving output ... done (0.145815 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 5.41633 (sec) -------------------------------------------------------------------------- cores_compute = 2 Fatal error in internal_Init_thread: Other MPI error, error stack: internal_Init_thread(67)...........: MPI_Init_thread(argc=0x7ffdff9783fc, argv=0x7ffdff9783f0, required=1, provided=0x7ffdff977fbc) failed MPII_Init_thread(234)..............: MPID_Init(67)......................: init_world(171)....................: channel initialization failed MPIDI_CH3_Init(84).................: MPID_nem_init(314).................: MPID_nem_tcp_init(175).............: MPID_nem_tcp_get_business_card(397): GetSockInterfaceAddr(370)..........: gethostbyname failed, LaMEM-primary-y9FuEdjl (errno 2) run LaMEM: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/runLaMEM.jl:4 Got exception outside of a @test failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/bin/mpiexec -n 2 /home/pkgeval/.julia/artifacts/cd461744844630cc33fbd2e7a8e795b56651d039/bin/LaMEM -ParamFile /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/input_files/FallingBlock_DirectSolver.dat '-nstep_max 5'`,["CI=true", "UCX_MEMTYPE_CACHE=no", "OPENBLAS_NUM_THREADS=1", "OPENBLAS_MAIN_FREE=1", "JULIA_CPU_THREADS=1", "JULIA_LOAD_PATH=@:/tmp/jl_OJEUUO", "FONTCONFIG_FILE=/home/pkgeval/.julia/artifacts/2a6bae048c28452d329375cbb7479499115e45ad/etc/fonts/fonts.conf", "ZES_ENABLE_SYSMAN=1", "PYTHON=", "R_HOME=*", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "UCX_ERROR_SIGNALS=SIGILL,SIGBUS,SIGFPE", "JULIA_PKG_PRECOMPILE_AUTO=0", "FONTCONFIG_PATH=/home/pkgeval/.julia/artifacts/2a6bae048c28452d329375cbb7479499115e45ad/etc/fonts", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/e83428c736a7117825caecd465ca39de72e835b8/lib:/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/lib:/home/pkgeval/.julia/artifacts/0a6a41be79ef85f32aa7d8529d4aebf9ef8ab030/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_real_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_complex_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_complex_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_real_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_real_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_complex_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_complex_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_real_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_real_Int64_deb/lib:/home/pkgeval/.julia/artifacts/cd461744844630cc33fbd2e7a8e795b56651d039/lib:/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib:/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/lib:/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib", "JULIA_PKGEVAL=true", "HOME=/home/pkgeval", "OMP_NUM_THREADS=1", "JULIA_NUM_THREADS=1", "VECLIB_MAXIMUM_THREADS=1", "PATH=/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin", "DISPLAY=:1", "PKGEVAL=true", "LANG=C.UTF-8"]), ProcessExited(15)) [15] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:517 [3] run @ ./process.jl:514 [inlined] [4] run_lamem(ParamFile::String, cores::Int64, args::String; wait::Bool, deactivate_multithreads::Bool) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/run_lamem.jl:0 [5] run_lamem(ParamFile::String, cores::Int64, args::String) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/run_lamem.jl:50 [6] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runLaMEM.jl:7 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [8] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runLaMEM.jl:36 [inlined] [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [10] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [12] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:7 [inlined] [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [14] top-level scope @ none:6 [15] eval(m::Module, e::Any) @ Core ./boot.jl:489 [16] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [17] _start() @ Base ./client.jl:553 Saved file: test_data.vts Saved file: test_data_phase.vts read LaMEM output: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/read_timestep.jl:5 Got exception outside of a @test SystemError: opening file "/home/pkgeval/.julia/packages/LaMEM/M6C0P/test/PlumeLithosphereInteraction_passive_tracers.pvd": No such file or directory Stacktrace: [1] systemerror(p::String, errno::Int32; extrainfo::Nothing) @ Base ./error.jl:186 [2] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Nothing, append::Nothing) @ Base ./iostream.jl:327 [3] open @ ./iostream.jl:306 [inlined] [4] open(f::Base.var"#366#367"{@Kwargs{}}, args::String; kwargs::@Kwargs{}) @ Base ./io.jl:418 [5] open @ ./io.jl:417 [inlined] [6] #readlines#364 @ ./io.jl:713 [inlined] [7] readlines @ ./io.jl:712 [inlined] [8] readPVD(FileName::String) @ LaMEM.IO_functions ~/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:383 [9] read_LaMEM_simulation(FileName::String, DirName::String; phase::Bool, surf::Bool, passive_tracers::Bool) @ LaMEM.IO_functions ~/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:593 [10] read_LaMEM_simulation @ ~/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:581 [inlined] [11] read_LaMEM_timestep(FileName::String, TimeStep::Int64, DirName::String; fields::Nothing, phase::Bool, surf::Bool, passive_tracers::Bool, last::Bool) @ LaMEM.IO_functions ~/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:550 [12] read_LaMEM_timestep @ ~/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:548 [inlined] [13] kwcall(::@NamedTuple{passive_tracers::Bool}, ::typeof(read_LaMEM_timestep), FileName::String, TimeStep::Int64) @ LaMEM.IO_functions ~/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:548 [14] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/read_timestep.jl:8 [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [16] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/read_timestep.jl:51 [inlined] [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [18] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [19] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [20] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:8 [inlined] [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [22] top-level scope @ none:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:489 [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [25] _start() @ Base ./client.jl:553 No partitioning file required for 1 core model setup run lamem mode save grid test: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/run_lamem_save_grid_test.jl:3 Got exception outside of a @test MethodError: no method matching length(::Nothing) The function `length` exists, but no method is defined for this combination of argument types. Closest candidates are: length(!Matched::DataStructures.EnumerateAll) @ DataStructures ~/.julia/packages/DataStructures/IrAJn/src/multi_dict.jl:96 length(!Matched::LibGit2.StrArrayStruct) @ LibGit2 /opt/julia/share/julia/stdlib/v1.13/LibGit2/src/strarray.jl:12 length(!Matched::Base.AsyncGenerator) @ Base asyncmap.jl:392 ... Stacktrace: [1] run_lamem_save_grid(ParamFile::String, cores::Int64; verbose::Bool, directory::String) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:92 [2] kwcall(::@NamedTuple{directory::String}, ::typeof(run_lamem_save_grid), ParamFile::String, cores::Int64) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:76 [3] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/run_lamem_save_grid_test.jl:5 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [5] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/run_lamem_save_grid_test.jl:11 [inlined] [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [7] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [9] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:9 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [11] top-level scope @ none:6 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [14] _start() @ Base ./client.jl:553 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 1000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 1. [Myr] Maximum number of steps : 2 Time step : 1. [Myr] Minimum time step : 0.2 [Myr] Maximum time step : 10. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [24, 24, 24] Number of cells : 13824 Number of faces : 43200 Maximum cell aspect ratio : 2.00000 Lower coordinate bounds [bx, by, bz] : [-1., -1., -1.] Upper coordinate bounds [ex, ey, ez] : [1., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 1 -- sphere (dens) : rho = 3200. [kg/m^3] (diff) : eta = 1e+23 [Pa*s] Bd = 5e-24 [1/Pa/s] Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.105618 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Preconditioner type : coupled Galerkin geometric multigrid Global coarse grid [nx,ny,nz] : [12, 12, 12] Local coarse grid [nx,ny,nz] : [12, 12, 12] Number of multigrid levels : 2 -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : multigrid Multigrid smoother levels KSP : chebyshev Multigrid smoother levels PC : sor Number of smoothening steps : 10 Coarse level KSP : preonly Coarse level PC : lu Coarse level solver package : (null) -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 3.403291317974e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 6 1 SNES Function norm 1.464986509563e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 20.6726 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.270115706137e-06 |Div|_2 = 6.060118300339e-05 Momentum: |mRes|_2 = 1.463732547230e-03 -------------------------------------------------------------------------- Saving output ... done (0.00741034 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 1.00000000 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 4.788630241324e+03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 16 1 SNES Function norm 3.498272686734e-03 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < rtol*||F_initial|| Number of iterations : 1 SNES solution time : 20.5535 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.403141994493e-05 |Div|_2 = 9.116365292802e-05 Momentum: |mRes|_2 = 3.497084639973e-03 -------------------------------------------------------------------------- Actual time step : 1.10000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 5.9198e-02 s -------------------------------------------------------------------------- Saving output ... done (0.00749766 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 42.2 (sec) -------------------------------------------------------------------------- | FineGrid | Cores | Nodes | CoarseGrid | CoaCores | Levels | SNES | KSP | TotalTime | CoarseTime | MemNode_Gb | Filename | | --------------- | ----- | ----- | ------------ | -------- | ------ | ---- | --- | --------- | ---------- | ---------- | -------------------------------- | | [512, 256, 256] | 512 | - | [32, 16, 16] | 512 | 5 | 1 | 72 | 26.26 | 9.9174 | - | input_files/128_cores_104812.txt | Saved file: Model3D.vts Fatal error in internal_Init_thread: Other MPI error, error stack: internal_Init_thread(67)...........: MPI_Init_thread(argc=0x7ffe518a0bec, argv=0x7ffe518a0be0, required=1, provided=0x7ffe518a07ac) failed MPII_Init_thread(234)..............: MPID_Init(67)......................: init_world(171)....................: channel initialization failed MPIDI_CH3_Init(84).................: MPID_nem_init(314).................: MPID_nem_tcp_init(175).............: MPID_nem_tcp_get_business_card(397): GetSockInterfaceAddr(370)..........: gethostbyname failed, LaMEM-primary-y9FuEdjl (errno 2) filesize compression: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/test_compression.jl:6 Got exception outside of a @test MethodError: no method matching length(::Nothing) The function `length` exists, but no method is defined for this combination of argument types. Closest candidates are: length(!Matched::DataStructures.EnumerateAll) @ DataStructures ~/.julia/packages/DataStructures/IrAJn/src/multi_dict.jl:96 length(!Matched::LibGit2.StrArrayStruct) @ LibGit2 /opt/julia/share/julia/stdlib/v1.13/LibGit2/src/strarray.jl:12 length(!Matched::Base.AsyncGenerator) @ Base asyncmap.jl:392 ... Stacktrace: [1] run_lamem_save_grid(ParamFile::String, cores::Int64; verbose::Bool, directory::String) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:92 [2] run_lamem_save_grid @ ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:76 [inlined] [3] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:296 [4] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [5] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [6] run_lamem @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [7] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [8] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_compression.jl:7 [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [10] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_compression.jl:23 [inlined] [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [12] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [14] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:12 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [16] top-level scope @ none:6 [17] eval(m::Module, e::Any) @ Core ./boot.jl:489 [18] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [19] _start() @ Base ./client.jl:553 rheology = Phase 0 (matrix): rho = 3000.0 eta = 1.0e20 ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000693883 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0018358 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000794472 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.855164213029e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.268605661839e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00099843 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.368738149400e-19 Momentum: |mRes|_2 = 1.268605661765e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4960e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000651354 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012823718e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.590416869505e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0010516 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.533293416683e-19 Momentum: |mRes|_2 = 1.590416869431e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4325e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000848152 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0195529 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.002f0, 0.002f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000719943 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00180982 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000899451 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 8.192074820223e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve did not converge due to DIVERGED_BREAKDOWN iterations 30 1 SNES Function norm 1.996269872508e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0021604 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.385244779468e-17 |Div|_2 = 6.076331735643e-17 Momentum: |mRes|_2 = 1.996269780031e-13 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.8282e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000621214 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529035026473e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.131007585929e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00107791 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.533293416683e-18 Momentum: |mRes|_2 = 2.131007580413e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3791e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000541795 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0196405 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.02f0, 0.02f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000795942 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00182931 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.00099978 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.900625156863e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.193054234538e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00099348 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 9.501471788263e-18 Momentum: |mRes|_2 = 1.193053856190e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5030e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000684753 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.531321061608e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.505745134977e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00114946 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.201851678990e-17 Momentum: |mRes|_2 = 1.505744655332e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3168e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000703563 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0189473 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.2f0, 0.2f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000823172 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00173422 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000721743 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.408582653022e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.331272599822e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000969811 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.468687011488e-16 Momentum: |mRes|_2 = 2.331226336186e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4427e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000467826 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.744843946556e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.645921959749e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0010183 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.642041997679e-16 Momentum: |mRes|_2 = 1.645840049152e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3436e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000447186 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0175951 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (2.0f0, 2.0f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (diff) : eta = 1e+20 [Pa*s] Bd = 5e-21 [1/Pa/s] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000725003 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00175618 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000669794 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.007037800205e-09 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve did not converge due to DIVERGED_BREAKDOWN iterations 60 1 SNES Function norm 1.382743448093e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00327897 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 7.771561172376e-15 |Div|_2 = 1.956356625210e-14 Momentum: |mRes|_2 = 1.382743434253e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5568e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000504885 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 8.543884777184e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.658946166339e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00102977 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.285176065878e-15 Momentum: |mRes|_2 = 1.658896384666e-13 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3697e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000567415 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.020571 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (20.0f0, 20.0f0) τ_linear = [0.0020000000949949026, 0.019999999552965164, 0.20000000298023224, 2.0, 20.0] τ_anal = [0.002, 0.02, 0.20000000000000004, 2.0, 20.0] ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Tumut_Pond_Serpentinite-Raleigh_Paterson_1965 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000684863 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00217396 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000928481 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.732070997253e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.676863757548e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00105177 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.065758146821e-20 |Div|_2 = 1.355252715607e-19 Momentum: |mRes|_2 = 1.676863757493e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4115e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000704913 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012298712e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.344047801612e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00148861 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.714274154578e-19 Momentum: |mRes|_2 = 1.344047801612e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3414e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000626883 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0236523 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00066601264f0, 0.00066601264f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Tumut_Pond_Serpentinite-Raleigh_Paterson_1965 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000849212 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00210126 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000769362 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.538538587820e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 1.914610129611e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00109381 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.673617379884e-19 |Div|_2 = 2.395080882144e-18 Momentum: |mRes|_2 = 1.914610114630e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4260e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000736963 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012236651e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.060973992895e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00135271 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.761620017532e-18 Momentum: |mRes|_2 = 3.060973992895e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3487e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000628504 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0232431 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.001515742f0, 0.001515742f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Tumut_Pond_Serpentinite-Raleigh_Paterson_1965 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000681263 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00179579 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000616235 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.574877395261e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.864620915674e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00098859 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.201851678990e-17 Momentum: |mRes|_2 = 1.864620528344e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5715e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000496615 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529027476038e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.967399903915e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00103294 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.321126039445e-17 Momentum: |mRes|_2 = 6.967399903915e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5754e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000460336 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.017341 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0034495955f0, 0.0034495955f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Tumut_Pond_Serpentinite-Raleigh_Paterson_1965 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000705343 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00172571 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000714913 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.757947606630e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.193302093907e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00100697 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.455514664586e-16 Momentum: |mRes|_2 = 3.193268922383e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5572e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000519775 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530525989706e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.585686169509e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00109296 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.594436429147e-16 Momentum: |mRes|_2 = 1.585686169509e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3677e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000521315 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0176081 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.007850748f0, 0.007850748f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Tumut_Pond_Serpentinite-Raleigh_Paterson_1965 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000808923 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00230455 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000857232 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.721068317499e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.327026433622e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00120322 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.514142333402e-15 Momentum: |mRes|_2 = 6.325214401243e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3955e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000837852 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673510065039e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.608776481627e-07 1 MMFD ||F||/||F0||=2.156412e-03 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 2 SNES Function norm 7.337506294466e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00327245 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.881784197001e-16 |Div|_2 = 2.717212732710e-15 Momentum: |mRes|_2 = 7.332473400632e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3388e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000662624 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0263974 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.017867092f0, 0.017867092f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000704633 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00186 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000886922 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.732070997253e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.676863757548e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00108164 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.065758146821e-20 |Div|_2 = 1.355252715607e-19 Momentum: |mRes|_2 = 1.676863757493e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4702e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000770852 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012298712e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.344047801612e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00118767 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.714274154578e-19 Momentum: |mRes|_2 = 1.344047801612e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4169e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000625194 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0188836 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00066601264f0, 0.00066601264f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000715673 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00177098 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000714853 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.536173268120e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve did not converge due to DIVERGED_BREAKDOWN iterations 60 1 SNES Function norm 1.558141012496e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00323699 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.531965080989e-17 |Div|_2 = 1.438840450765e-16 Momentum: |mRes|_2 = 1.558140348159e-13 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4825e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000645744 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012312017e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.061084525594e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00110479 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.505213034913e-19 |Div|_2 = 1.707403288634e-18 Momentum: |mRes|_2 = 3.061084525594e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3501e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000573804 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.020539 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.001515742f0, 0.001515742f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000664614 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00182335 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000775582 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.575177734083e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.883753867839e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00104623 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.250926888277e-17 Momentum: |mRes|_2 = 1.883753452494e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3977e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000554715 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529027475860e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.967410109455e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00104773 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.409296014026e-17 Momentum: |mRes|_2 = 6.967410109455e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3780e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000559435 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0182414 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0034495955f0, 0.0034495955f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000730213 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0018103 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000753353 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.757910772242e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.290919515336e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.001061 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.455514664586e-16 Momentum: |mRes|_2 = 3.290887327778e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.6284e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000555885 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530525989717e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.585686263715e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00109645 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.594436429147e-16 Momentum: |mRes|_2 = 1.585686263715e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3892e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000548065 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0181391 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.007850748f0, 0.007850748f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 4.0257e-23 [1/Pa^n/s] En = 66000. [J/mol] n = 2.8 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000669593 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0017929 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000653724 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.721073818982e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.206221377386e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00102803 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.489520491948e-15 Momentum: |mRes|_2 = 6.204433662484e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5597e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000461545 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673510065031e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.608776465926e-07 1 MMFD ||F||/||F0||=2.156412e-03 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 2 SNES Function norm 7.323744093763e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.0025304 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.881784197001e-16 |Div|_2 = 2.717212732710e-15 Momentum: |mRes|_2 = 7.318701736004e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3504e-04 s -------------------------------------------------------------------------- Saving output ... done (0.00100599 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0199561 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.017867092f0, 0.017867092f0) τ_num1 = [0.0006660126382485032, 0.0015157420421019197, 0.003449595533311367, 0.007850747555494308, 0.017867092043161392] τ_num2 = [0.0006660126382485032, 0.0015157420421019197, 0.003449595533311367, 0.007850747555494308, 0.017867092043161392] ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Dry_Olivine-Ranalli_1995 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000707643 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00176532 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000647774 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 4.999601326924e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 2.245639208773e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00111422 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 2.019281067463e-19 Momentum: |mRes|_2 = 2.245639208773e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4563e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000454515 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529983614622e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 6.355036424707e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00113797 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.151964808266e-18 |Div|_2 = 3.319788279835e-18 Momentum: |mRes|_2 = 6.355036424707e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4341e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000818462 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0182488 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.28025904f0, 0.28025904f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Dry_Olivine-Ranalli_1995 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000689913 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00184947 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.00098039 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 5.166485402623e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve did not converge due to DIVERGED_BREAKDOWN iterations 30 1 SNES Function norm 2.672158256062e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00224749 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.035766082959e-18 |Div|_2 = 7.132699033577e-18 Momentum: |mRes|_2 = 2.672158256062e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.6028e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000520885 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.532640059961e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 1.214267533388e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00109654 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.433061127045e-14 |Div|_2 = 1.730949475871e-13 Momentum: |mRes|_2 = 1.214267533264e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3859e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000671013 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0196973 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.5410955f0, 0.5410955f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Dry_Olivine-Ranalli_1995 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000728323 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00179502 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000663944 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.042474277838e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 3.155075594917e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0010105 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.717288626685e-17 Momentum: |mRes|_2 = 3.155075594871e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4527e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000683253 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.542469102073e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 2.344382818817e-07 1 PICARD ||F||/||F0||=1.519890e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 2 SNES Function norm 1.130031258622e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00184011 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.488670298144e-13 |Div|_2 = 4.858601896386e-13 Momentum: |mRes|_2 = 1.130020813724e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3901e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000779923 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0191691 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.0446918f0, 1.0446918f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Dry_Olivine-Ranalli_1995 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000696864 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00176366 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000873741 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.784431980867e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.724013332527e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00100493 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.481742263891e-16 Momentum: |mRes|_2 = 7.724013331105e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4511e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000638304 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.580001929353e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.526537046699e-06 1 PICARD ||F||/||F0||=2.864893e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 2 SNES Function norm 2.764898326264e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00190038 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.594436429147e-16 Momentum: |mRes|_2 = 2.764898321667e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4065e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000892092 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.020092 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (2.0169842f0, 2.0169842f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix dislocation creep profile: Dry_Olivine-Ranalli_1995 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000692393 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00178317 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000792142 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.729160028127e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 1.853669481181e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00111694 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.534358746845e-15 Momentum: |mRes|_2 = 1.853669474831e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4498e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000454576 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.836925303655e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.739374791909e-05 1 PICARD ||F||/||F0||=4.757610e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 2 SNES Function norm 1.216630214054e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.0016881 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.294731409828e-15 Momentum: |mRes|_2 = 1.216630213985e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3903e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000568974 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0191341 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (3.8941867f0, 3.8941867f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000713843 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00178807 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000665874 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 4.999601326924e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 2.245639208773e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00103526 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 2.019281067463e-19 Momentum: |mRes|_2 = 2.245639208773e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4688e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000565175 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529983614622e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 6.355036424707e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0012692 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.151964808266e-18 |Div|_2 = 3.319788279835e-18 Momentum: |mRes|_2 = 6.355036424707e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4495e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000566224 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0184732 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.28025904f0, 0.28025904f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000771553 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00172277 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000662343 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 5.166485402623e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve did not converge due to DIVERGED_BREAKDOWN iterations 30 1 SNES Function norm 2.672158256062e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00209868 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.035766082959e-18 |Div|_2 = 7.132699033577e-18 Momentum: |mRes|_2 = 2.672158256062e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5152e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000777862 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.532640059961e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 1.214267533388e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00102211 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.433061127045e-14 |Div|_2 = 1.730949475871e-13 Momentum: |mRes|_2 = 1.214267533264e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3642e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000491806 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0189067 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.5410955f0, 0.5410955f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000710863 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00185323 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000662423 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.042474277838e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 3.155075594917e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00098934 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.717288626685e-17 Momentum: |mRes|_2 = 3.155075594871e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4303e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000514905 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.542469102073e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 1 SNES Function norm 2.344382818817e-07 1 PICARD ||F||/||F0||=1.519890e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 1 2 SNES Function norm 1.130031258622e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.0017231 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.488670298144e-13 |Div|_2 = 4.858601896386e-13 Momentum: |mRes|_2 = 1.130020813724e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4070e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000658624 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.018385 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.0446918f0, 1.0446918f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000857702 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00206384 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000750523 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.784431980867e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.724013332527e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00103434 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.481742263891e-16 Momentum: |mRes|_2 = 7.724013331105e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4544e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000615825 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.580001929353e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.526537046699e-06 1 PICARD ||F||/||F0||=2.864893e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 2 SNES Function norm 2.764898326264e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00242037 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.594436429147e-16 Momentum: |mRes|_2 = 2.764898321667e-12 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3408e-04 s -------------------------------------------------------------------------- Saving output ... done (0.00119699 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.023495 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (2.0169842f0, 2.0169842f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- matrix (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.48058e-16 [1/Pa^n/s] En = 532000. [J/mol] n = 3.5 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000777423 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00180486 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000835122 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.729160028127e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 1.853669481181e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00118252 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.534358746845e-15 Momentum: |mRes|_2 = 1.853669474831e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5328e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000723103 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.836925303655e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.739374791909e-05 1 PICARD ||F||/||F0||=4.757610e-01 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 2 SNES Function norm 1.216630214054e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00187225 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.294731409828e-15 Momentum: |mRes|_2 = 1.216630213985e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4796e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000781463 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0200796 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (3.8941867f0, 3.8941867f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology dislocation creep profile: Wet_Quarzite-Ueda_et_al_2008 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000964161 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00198214 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000814563 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.733398697939e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.470853950173e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00101399 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.196926789768e-19 Momentum: |mRes|_2 = 8.470853949328e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4026e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000845502 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012429987e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.141630061900e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00133334 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.735570302230e-19 Momentum: |mRes|_2 = 5.141630061900e-13 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3804e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000734833 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0228004 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00029242327f0, 0.00029242327f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology dislocation creep profile: Wet_Quarzite-Ueda_et_al_2008 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000689663 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0019581 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.00096229 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.537125835156e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 4 1 SNES Function norm 1.773537767839e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00110991 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.915082863629e-18 Momentum: |mRes|_2 = 1.773537757500e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4456e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000840222 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012259639e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.412456206055e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00133649 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.622685226975e-18 Momentum: |mRes|_2 = 1.412456206055e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3930e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000651334 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.025206 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00079578283f0, 0.00079578283f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology dislocation creep profile: Wet_Quarzite-Ueda_et_al_2008 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000875631 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00204572 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000854882 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.575355648999e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.497363577973e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00113841 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.365922630907e-17 Momentum: |mRes|_2 = 1.497362954963e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4436e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000582595 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529027377354e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.845756209644e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0014195 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.226634733347e-17 Momentum: |mRes|_2 = 3.845756209644e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4028e-04 s -------------------------------------------------------------------------- Saving output ... done (0.00103791 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0245314 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0021655946f0, 0.0021655946f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology dislocation creep profile: Wet_Quarzite-Ueda_et_al_2008 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000865722 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00202948 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000724443 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.758143280721e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.557709372943e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00100419 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.775557561563e-17 |Div|_2 = 1.316562550716e-16 Momentum: |mRes|_2 = 2.557675488163e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4254e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000764002 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530525703377e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.046566607204e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00128853 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.455514664586e-16 Momentum: |mRes|_2 = 1.046566607204e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.6660e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000605064 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0218807 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0058933166f0, 0.0058933166f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology dislocation creep profile: Wet_Quarzite-Ueda_et_al_2008 (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000739153 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00180555 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000744743 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.721067804689e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.655639651614e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00132122 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.336885555458e-15 Momentum: |mRes|_2 = 5.654059359348e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4736e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000998201 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673510051971e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.848062535603e-07 1 MMFD ||F||/||F0||=1.701850e-03 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 2 SNES Function norm 4.525074343373e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00327572 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.881784197001e-16 |Div|_2 = 2.383749925626e-15 Momentum: |mRes|_2 = 4.518791340168e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.7407e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000711393 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0228182 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.016037712f0, 0.016037712f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000679794 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00178345 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000808543 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.733398697939e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.470853950173e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00105159 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.196926789768e-19 Momentum: |mRes|_2 = 8.470853949328e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.6192e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000569344 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012429987e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.141630061900e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0010922 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.735570302230e-19 Momentum: |mRes|_2 = 5.141630061900e-13 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4179e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000607954 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0182427 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00029242327f0, 0.00029242327f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000714523 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00217734 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000738523 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.537750739444e-13 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 5 1 SNES Function norm 2.281739069316e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00121869 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.301042606983e-18 |Div|_2 = 4.215859886717e-18 Momentum: |mRes|_2 = 2.281739030369e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5173e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000630324 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012268549e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.412613368437e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0015334 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.502314598737e-18 Momentum: |mRes|_2 = 1.412613368437e-11 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 2.2725e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000781592 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0242519 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00079578283f0, 0.00079578283f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000792643 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00200578 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000758213 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 7.575355648999e-12 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.497363577973e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00113487 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.365922630907e-17 Momentum: |mRes|_2 = 1.497362954963e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4763e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000800622 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529027377354e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 3.845756209644e-10 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00128547 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.226634733347e-17 Momentum: |mRes|_2 = 3.845756209644e-10 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5323e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000708503 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0201187 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0021655946f0, 0.0021655946f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000692444 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00173784 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000597774 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 6.758143280721e-11 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.557709372943e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00099749 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.775557561563e-17 |Div|_2 = 1.316562550716e-16 Momentum: |mRes|_2 = 2.557675488163e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4513e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000607135 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530525703371e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.046566599353e-08 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00111702 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.468687011488e-16 Momentum: |mRes|_2 = 1.046566599353e-08 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3467e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000646654 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0177541 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0058933166f0, 0.0058933166f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (disl) : Bn = 1.53539e-17 [1/Pa^n/s] En = 154000. [J/mol] n = 2.3 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000680414 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00208621 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000822922 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 9.721067804689e-10 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.613639044842e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00128061 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.336885555458e-15 Momentum: |mRes|_2 = 5.612046925667e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4801e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000610064 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673510051970e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.848062534818e-07 1 MMFD ||F||/||F0||=1.701850e-03 Linear js_ solve converged due to CONVERGED_RTOL iterations 3 2 SNES Function norm 4.645808098495e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 2 SNES solution time : 0.00309716 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.790180836525e-15 Momentum: |mRes|_2 = 4.642357742975e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4589e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000763123 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0242564 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.016037712f0, 0.016037712f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology diffusion creep profile : Dry_Plagioclase_RybackiDresen_2000 (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88835 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000771143 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00185009 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000849872 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643776193159e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.468632384106e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00100265 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.496925551340e-19 Momentum: |mRes|_2 = 1.468632376477e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4825e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000716143 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012493598e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.741239287980e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00109756 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.509145554517e-19 Momentum: |mRes|_2 = 1.741239287915e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3827e-04 s -------------------------------------------------------------------------- Saving output ... done (0.00106602 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0197486 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.6801193f-6, 1.8722288f-6) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology diffusion creep profile : Dry_Plagioclase_RybackiDresen_2000 (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88835 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000671723 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00175395 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000681114 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643775949684e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 6.290700433835e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000958171 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.651407549307e-18 Momentum: |mRes|_2 = 6.290700217074e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4667e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000539775 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012083211e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.049795325108e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00099177 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.707403288634e-18 Momentum: |mRes|_2 = 2.049795317997e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4060e-04 s -------------------------------------------------------------------------- Saving output ... done (0.00107536 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0183192 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.6801194f-5, 1.8722289f-5) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology diffusion creep profile : Dry_Plagioclase_RybackiDresen_2000 (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88835 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000693493 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00196356 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000698323 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643775888174e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.509971681121e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000917931 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.387778780781e-17 Momentum: |mRes|_2 = 4.509950329163e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4119e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000899822 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529025548536e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.248139529364e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00127669 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.250926888277e-17 Momentum: |mRes|_2 = 1.248138902504e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3583e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000575384 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0226551 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00016801193f0, 0.00018722289f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology diffusion creep profile : Dry_Plagioclase_RybackiDresen_2000 (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88835 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000636264 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00178285 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000691203 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643775926557e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.453753162213e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00098779 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.241267076624e-16 Momentum: |mRes|_2 = 1.453700169309e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.5097e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000771593 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530507771875e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.935424250481e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00111319 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.551115123126e-17 |Div|_2 = 1.699674944388e-16 Momentum: |mRes|_2 = 1.935349616958e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4425e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000544504 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0179947 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0016801193f0, 0.0018722288f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology diffusion creep profile : Dry_Plagioclase_RybackiDresen_2000 (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88835 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000734003 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00179004 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000673934 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643775934397e-03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.487533228243e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000937581 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.373270039557e-15 Momentum: |mRes|_2 = 1.481180744917e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4054e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000629934 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673362537378e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.370876409381e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00114557 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.505979781574e-15 Momentum: |mRes|_2 = 2.366088586156e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.3648e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000647244 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0184197 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.016801193f0, 0.01872228f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88839 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000510365 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404679741346e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.855164213029e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.0013831 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.219727444046e-18 |Div|_2 = 4.351986372410e-18 Momentum: |mRes|_2 = 1.855164212518e-13 -------------------------------------------------------------------------- Saving output ... done (0.000530305 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643742963921e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.318548988781e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000660244 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 5.421010862428e-20 |Div|_2 = 1.580482678012e-19 Momentum: |mRes|_2 = 4.318548985889e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 9.1229e-05 s -------------------------------------------------------------------------- Saving output ... done (0.000428056 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529013223529e-08 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.854501415834e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000637354 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.065758146821e-20 |Div|_2 = 1.484604966916e-19 Momentum: |mRes|_2 = 1.854501415775e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 8.6170e-05 s -------------------------------------------------------------------------- Saving output ... done (0.000400686 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0126562 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.6800853f-6, 1.8721911f-6) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88839 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000520405 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.404745638765e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 8.192074820223e-13 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00131301 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.107298248878e-18 |Div|_2 = 3.680670766906e-17 Momentum: |mRes|_2 = 8.192074811954e-13 -------------------------------------------------------------------------- Saving output ... done (0.000837042 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643742768540e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 4.768238622152e-15 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000635244 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 6.505213034913e-19 |Div|_2 = 1.761620017532e-18 Momentum: |mRes|_2 = 4.768238296738e-15 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.4100e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000555985 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529012070155e-07 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.494164679288e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000917241 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.336808689942e-19 |Div|_2 = 1.707403288634e-18 Momentum: |mRes|_2 = 1.494164669533e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.0251e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000480775 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0138752 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (1.6800854f-5, 1.872191f-5) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88839 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000547185 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 4.411330409550e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.900625156863e-12 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00139862 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.367506770275e-17 |Div|_2 = 3.652489012102e-16 Momentum: |mRes|_2 = 7.900625148420e-12 -------------------------------------------------------------------------- Saving output ... done (0.000659984 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643742707915e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.303083294658e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000719403 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.097135458930e-17 Momentum: |mRes|_2 = 1.303082832789e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 9.9989e-05 s -------------------------------------------------------------------------- Saving output ... done (0.000901961 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.529025552216e-06 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.737093484513e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000756163 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 3.469446951954e-18 |Div|_2 = 1.430489624538e-17 Momentum: |mRes|_2 = 1.737092895512e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 9.5239e-05 s -------------------------------------------------------------------------- Saving output ... done (0.000416946 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0140497 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.00016800854f0, 0.0001872191f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88839 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000577115 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 5.026432132460e+01 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 7.408582653022e-11 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00143885 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 9.992007221626e-16 |Div|_2 = 4.055212130474e-15 Momentum: |mRes|_2 = 7.408582641923e-11 -------------------------------------------------------------------------- Saving output ... done (0.000564895 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643742746428e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.276251701487e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000744312 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.401587864986e-16 Momentum: |mRes|_2 = 1.276174737524e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.0772e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000699613 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.530507773124e-05 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.728004276619e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000751163 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.163336342344e-17 |Div|_2 = 1.455514664586e-16 Momentum: |mRes|_2 = 1.727942975830e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 9.7619e-05 s -------------------------------------------------------------------------- Saving output ... done (0.000384186 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.0140397 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.0016800853f0, 0.001872191f0) ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts Writing LaMEM marker file -> ./markers/mdb.00000000.dat cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : output.dat Finished parsing input file -------------------------------------------------------------------------- Scaling parameters: Temperature : 1000. [C/K] Length : 2000. [m] Viscosity : 1e+20 [Pa*s] Stress : 1e+07 [Pa] -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [Myr] Maximum number of steps : 2 Time step : 1e-06 [Myr] Minimum time step : 1e-10 [Myr] Maximum time step : 1. [Myr] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.8 Output every [n] steps : 1 Output [n] initial steps : 1 Save restart every [n] steps : 100 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [8, 1, 8] Number of cells : 64 Number of faces : 272 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [-1., -0.125, -1.] Upper coordinate bounds [ex, ey, ez] : [1., 0.125, 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 -- rheology (dens) : rho = 3000. [kg/m^3] (diff) : Bd = 1.88839 [1/Pa/s] Ed = 460000. [J/mol] Vd = 2.4e-05 [m^3/mol] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 Number of x-background strain rate periods : 1 Top boundary temperature : 0. [C] Bottom boundary temperature : 1300. [C] -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -9.81] [m/s^2] Surface stabilization (FSSA) : 1. Compute initial guess @ Use lithostatic pressure for creep @ Enforce zero average pressure on top @ Limit pressure at first iteration @ Reference viscosity (initial guess) : 1e+20 [Pa*s] Universal gas constant : 8.31446 [J/mol/K] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : binary files (MATLAB) Velocity interpolation scheme : STAG (linear) Marker control type : subgrid Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise -------------------------------------------------------------------------- Loading markers in parallel from file(s) <./markers/mdb> ... done (0.000562654 sec) -------------------------------------------------------------------------- Output parameters: Output file name : output Write .pvd file : yes Phase @ Density @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Temperature @ Deviatoric stress second invariant @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+04 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- ============================== INITIAL GUESS ============================= -------------------------------------------------------------------------- 0 SNES Function norm 2.461266787616e+02 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.007037800205e-09 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.00140913 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.043609643148e-14 |Div|_2 = 3.386489617389e-14 Momentum: |mRes|_2 = 1.007037799635e-09 -------------------------------------------------------------------------- Saving output ... done (0.000918381 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [Myr] Tentative time step : 0.00000100 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.643742754277e-03 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.380948806640e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000717744 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.368774871884e-15 Momentum: |mRes|_2 = 1.374148521835e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.1436e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000414196 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 0.00000110 [Myr] Tentative time step : 0.00000110 [Myr] -------------------------------------------------------------------------- 0 SNES Function norm 1.673362539976e-04 0 PICARD ||F||/||F0||=1.000000e+00 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 2.931460429801e-14 -------------------------------------------------------------------------- SNES Convergence Reason : ||F|| < atol Number of iterations : 1 SNES solution time : 0.000769423 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 4.440892098501e-16 |Div|_2 = 1.382216518796e-15 Momentum: |mRes|_2 = 2.928199963534e-14 -------------------------------------------------------------------------- Actual time step : 0.00000 [Myr] -------------------------------------------------------------------------- Performing marker control (subgrid algorithm) Marker control [0]: (subgrid) cloned 0 markers and merged 0 markers in 1.1486e-04 s -------------------------------------------------------------------------- Saving output ... done (0.000404106 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 0.01389 (sec) -------------------------------------------------------------------------- extrema(data.fields.j2_dev_stress) = (0.016800852f0, 0.018721903f0) Saved file: Model3D.vts Saved file: Model3D.vts Subduction3D: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:13 Got exception outside of a @test LoadError: MethodError: no method matching length(::Nothing) The function `length` exists, but no method is defined for this combination of argument types. Closest candidates are: length(!Matched::DataStructures.EnumerateAll) @ DataStructures ~/.julia/packages/DataStructures/IrAJn/src/multi_dict.jl:96 length(!Matched::LibGit2.StrArrayStruct) @ LibGit2 /opt/julia/share/julia/stdlib/v1.13/LibGit2/src/strarray.jl:12 length(!Matched::Base.AsyncGenerator) @ Base asyncmap.jl:392 ... Stacktrace: [1] run_lamem_save_grid(ParamFile::String, cores::Int64; verbose::Bool, directory::String) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:92 [2] run_lamem_save_grid @ ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:76 [inlined] [3] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:296 [4] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [5] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [6] run_lamem @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [7] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [8] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/example_scripts/Subduction3D.jl:99 [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [10] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:6 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [12] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:14 [inlined] [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [14] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:15 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [16] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [18] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:14 [inlined] [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [23] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/LaMEM/M6C0P/example_scripts/Subduction3D.jl:91 caused by: MethodError: no method matching length(::Nothing) The function `length` exists, but no method is defined for this combination of argument types. Closest candidates are: length(!Matched::DataStructures.EnumerateAll) @ DataStructures ~/.julia/packages/DataStructures/IrAJn/src/multi_dict.jl:96 length(!Matched::LibGit2.StrArrayStruct) @ LibGit2 /opt/julia/share/julia/stdlib/v1.13/LibGit2/src/strarray.jl:12 length(!Matched::Base.AsyncGenerator) @ Base asyncmap.jl:392 ... Stacktrace: [1] run_lamem_save_grid(ParamFile::String, cores::Int64; verbose::Bool, directory::String) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:92 [2] run_lamem_save_grid @ ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:76 [inlined] [3] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:296 [4] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [5] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [6] run_lamem(model::Model, cores::Int64, args::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [7] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/example_scripts/Subduction3D.jl:94 [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [9] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:6 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [11] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:14 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [13] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:15 [inlined] [14] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [15] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [17] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:14 [inlined] [18] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:312 [19] top-level scope @ none:6 [20] eval(m::Module, e::Any) @ Core ./boot.jl:489 [21] exec_options(opts::Base.JLOptions) @ Base ./client.jl:286 [22] _start() @ Base ./client.jl:553 Precompiling packages... 2451.1 ms ✓ FilePaths 1745.2 ms ✓ StructArrays → StructArraysStaticArraysExt 5353.6 ms ✓ ImageAxes 7839.1 ms ✓ FreeTypeAbstraction 5908.1 ms ✓ ShaderAbstractions 3686.4 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 1760.2 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 6425.2 ms ✓ Distributions → DistributionsChainRulesCoreExt 4190.9 ms ✓ ImageMetadata 29428.2 ms ✓ MathTeXEngine 8415.8 ms ✓ KernelDensity 8109.2 ms ✓ Netpbm ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 638 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_70431.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_70431.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000077a1bfb154b0 Total snapshots: 118. Utilization: 0% ╎118 @Base/task.jl:1129 wait_forever() 117╎ 118 @Base/task.jl:1192 wait() [638] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/LaMEM/M6C0P/example_scripts/StrengthEnvelop.jl:1 PkgEval terminated after 2754.52s: test duration exceeded the time limit