Package evaluation of EnergySamplers on Julia 1.13.0-DEV.974 (7bbb213719*) started at 2025-08-12T22:01:27.879 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.43s ################################################################################ # Installation # Installing EnergySamplers... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [f446124b] + EnergySamplers v1.0.3 Updating `~/.julia/environments/v1.13/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [a9b6321e] + Atomix v1.1.2 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 ⌅ [324d7699] + CategoricalArrays v0.10.8 [082447d4] + ChainRules v1.72.5 [d360d2e6] + ChainRulesCore v1.26.0 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [6add18c4] + ContextVariablesX v0.1.3 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.0 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [f446124b] + EnergySamplers v1.0.3 [f151be2c] + EnzymeCore v0.8.12 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [1a297f60] + FillArrays v1.13.0 [587475ba] + Flux v0.16.5 [f6369f11] + ForwardDiff v1.0.1 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [7869d1d1] + IRTools v0.4.15 [22cec73e] + InitialValues v0.3.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [b14d175d] + JuliaVariables v0.2.4 [63c18a36] + KernelAbstractions v0.9.38 [2ab3a3ac] + LogExpFunctions v0.3.29 [c2834f40] + MLCore v1.0.0 [7e8f7934] + MLDataDevices v1.11.1 [d8e11817] + MLStyle v0.4.17 [f1d291b0] + MLUtils v0.4.8 [1914dd2f] + MacroTools v0.5.16 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [872c559c] + NNlib v0.9.31 [77ba4419] + NaNMath v1.1.3 [71a1bf82] + NameResolution v0.1.5 [0b1bfda6] + OneHotArrays v0.2.10 [3bd65402] + Optimisers v0.4.6 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.5.0 [8162dcfd] + PrettyPrint v0.2.0 [33c8b6b6] + ProgressLogging v0.1.5 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c1ae055f] + RealDot v0.1.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [7e506255] + ScopedValues v1.4.0 [efcf1570] + Setfield v1.1.2 [605ecd9f] + ShowCases v0.1.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [dc90abb0] + SparseInverseSubset v0.1.2 [276daf66] + SpecialFunctions v2.5.1 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [09ab397b] + StructArrays v0.7.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [28d57a85] + Transducers v0.4.84 [013be700] + UnsafeAtomics v0.3.0 [e88e6eb3] + Zygote v0.7.10 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 3.43s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:76 Precompiling package dependencies... Precompilation completed after 576.11s ################################################################################ # Testing # Testing EnergySamplers Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_2QX3My/Project.toml` [4c88cf16] + Aqua v0.8.14 [f446124b] + EnergySamplers v1.0.3 ⌅ [587475ba] ↓ Flux v0.16.5 ⇒ v0.14.25 [cc2ba9b6] + MLDataUtils v0.5.4 [a7f614a8] + MLJBase v1.8.2 ⌅ [3bd65402] ↓ Optimisers v0.4.6 ⇒ v0.3.4 [91a5bcdd] + Plots v1.40.18 [ce6b1742] + RDatasets v0.7.7 Updating `/tmp/jl_2QX3My/Manifest.toml` [4c88cf16] + Aqua v0.8.14 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.15 ⌅ [324d7699] + CategoricalArrays v0.10.8 [af321ab8] + CategoricalDistributions v0.1.15 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.30.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [ed09eef8] + ComputationalResources v0.3.2 [f0e56b4a] + ConcurrentUtilities v2.5.0 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [a93c6f00] + DataFrames v1.7.0 ⌅ [864edb3b] ↓ DataStructures v0.19.0 ⇒ v0.18.22 [f446124b] + EnergySamplers v1.0.3 [f151be2c] - EnzymeCore v0.8.12 [460bff9d] + ExceptionUnwrapping v0.1.11 [e2ba6199] + ExprTools v0.1.10 [c87230d0] + FFMPEG v0.4.4 [5789e2e9] + FileIO v1.17.0 [48062228] + FilePathsBase v0.9.24 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [587475ba] ↓ Flux v0.16.5 ⇒ v0.14.25 [1fa38f19] + Format v1.3.7 ⌅ [d9f16b24] ↓ Functors v0.5.2 ⇒ v0.4.12 [0c68f7d7] + GPUArrays v11.2.3 [28b8d3ca] + GR v0.73.17 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.10.17 [842dd82b] + InlineStrings v1.4.4 [41ab1584] + InvertedIndices v1.3.1 [1019f520] + JLFzf v0.1.11 [682c06a0] + JSON v0.21.4 [929cbde3] + LLVM v9.4.2 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.9 [92ad9a40] + LearnAPI v1.0.1 ⌅ [7f8f8fb0] + LearnBase v0.3.0 [e6f89c97] + LoggingExtras v1.1.0 ⌃ [7e8f7934] ↓ MLDataDevices v1.11.1 ⇒ v1.5.3 ⌃ [9920b226] + MLDataPattern v0.5.4 [cc2ba9b6] + MLDataUtils v0.5.4 [a7f614a8] + MLJBase v1.8.2 [e80e1ace] + MLJModelInterface v1.12.0 [66a33bbf] + MLLabelUtils v0.5.7 [dbb5928d] + MappedArrays v0.4.2 [739be429] + MbedTLS v1.1.9 [442fdcdd] + 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[f27f6e37] + libvorbis_jll v1.3.8+0 [009596ad] + mtdev_jll v1.1.7+0 [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [d8fb68d0] + xkbcommon_jll v1.9.2+0 [0dad84c5] + ArgTools v1.1.2 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [3fa0cd96] + REPL v1.11.0 [a4e569a6] + Tar v1.10.0 [deac9b47] + LibCURL_jll v8.15.0+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.7.15 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_2QX3My/Project.toml` [4c88cf16] Aqua v0.8.14 [31c24e10] Distributions v0.25.120 [f446124b] EnergySamplers v1.0.3 ⌅ [587475ba] Flux v0.14.25 [cc2ba9b6] MLDataUtils v0.5.4 [a7f614a8] MLJBase v1.8.2 ⌅ [3bd65402] Optimisers v0.3.4 [91a5bcdd] Plots v1.40.18 [ce6b1742] RDatasets v0.7.7 [10745b16] Statistics v1.11.1 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_2QX3My/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [dce04be8] ArgCheck v2.5.0 [a9b6321e] Atomix v1.1.2 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.15 ⌅ [324d7699] CategoricalArrays v0.10.8 [af321ab8] CategoricalDistributions v0.1.15 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.26.0 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Persistent tasks: Test Failed at /home/pkgeval/.julia/packages/Aqua/MCcFg/src/persistent_tasks.jl:38 Expression: !(has_persistent_tasks(package; kwargs...)) Evaluated: !(has_persistent_tasks(Base.PkgId(Base.UUID("f446124b-5d5e-4171-a6dd-a1d99768d3ce"), "EnergySamplers"))) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:745 [inlined] [2] test_persistent_tasks(package::Base.PkgId; broken::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/MCcFg/src/persistent_tasks.jl:38 [3] test_persistent_tasks @ ~/.julia/packages/Aqua/MCcFg/src/persistent_tasks.jl:34 [inlined] [4] #test_persistent_tasks#57 @ ~/.julia/packages/Aqua/MCcFg/src/persistent_tasks.jl:43 [inlined] [5] test_persistent_tasks @ ~/.julia/packages/Aqua/MCcFg/src/persistent_tasks.jl:42 [inlined] [6] macro expansion @ ~/.julia/packages/Aqua/MCcFg/src/Aqua.jl:109 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1929 [inlined] [8] test_all(testtarget::Module; ambiguities::Bool, unbound_args::Bool, undefined_exports::Bool, project_extras::Bool, stale_deps::Bool, deps_compat::Bool, piracies::Bool, persistent_tasks::Bool, undocumented_names::Bool) @ Aqua ~/.julia/packages/Aqua/MCcFg/src/Aqua.jl:109 Precompiling packages... 19212.0 ms ✓ StatisticalMeasuresBase 14485.0 ms ✓ MLJBase 2 dependencies successfully precompiled in 36 seconds. 144 already precompiled. ┌ Warning: Number of observations less than batch-size, decreasing the batch-size to 10 └ @ MLUtils ~/.julia/packages/MLUtils/5jDrc/src/batchview.jl:104 ┌ Warning: Number of observations less than batch-size, decreasing the batch-size to 10 └ @ MLUtils ~/.julia/packages/MLUtils/5jDrc/src/batchview.jl:104 ┌ Warning: Number of observations less than batch-size, decreasing the batch-size to 10 └ @ MLUtils ~/.julia/packages/MLUtils/5jDrc/src/batchview.jl:104 ┌ Warning: Number of observations less than batch-size, decreasing the batch-size to 10 └ @ MLUtils ~/.julia/packages/MLUtils/5jDrc/src/batchview.jl:104 ┌ Warning: Number of observations less than batch-size, decreasing the batch-size to 10 └ @ MLUtils ~/.julia/packages/MLUtils/5jDrc/src/batchview.jl:104 ┌ Warning: Number of observations less than batch-size, decreasing the batch-size to 10 └ @ MLUtils ~/.julia/packages/MLUtils/5jDrc/src/batchview.jl:104 [ Info: Epoch 1 Accuracy: 0.987 [ Info: Epoch 2 Accuracy: 0.989 [ Info: Epoch 3 Accuracy: 0.9895 [ Info: Epoch 4 Accuracy: 0.9875 [ Info: Epoch 5 Accuracy: 0.9865 Precompiling packages... 5005.4 ms ✓ LearnBase 61095.7 ms ✓ DataFrames 4077.2 ms ✓ MLLabelUtils 6301.5 ms ✓ MLDataPattern 7266.5 ms ✓ MLDataUtils 5 dependencies successfully precompiled in 85 seconds. 46 already precompiled. Precompiling packages... 6411.9 ms ✓ BangBang → BangBangDataFramesExt 1 dependency successfully precompiled in 7 seconds. 47 already precompiled. Precompiling packages... 5690.8 ms ✓ Transducers → TransducersDataFramesExt 1 dependency successfully precompiled in 6 seconds. 63 already precompiled. Precompiling packages... 17183.6 ms ✓ RData 21726.2 ms ✓ CSV 14705.7 ms ✓ RDatasets 3 dependencies successfully precompiled in 54 seconds. 71 already precompiled. Precompiling packages... 6277.9 ms ✓ TimeZones → TimeZonesRecipesBaseExt 1 dependency successfully precompiled in 6 seconds. 28 already precompiled. Precompiling packages... 6593.3 ms ✓ ColorSchemes 13326.0 ms ✓ PlotUtils 8239.5 ms ✓ PlotThemes 6877.6 ms ✓ RecipesPipeline 84364.2 ms ✓ Plots 15898.6 ms ✓ Plots → UnitfulExt 6 dependencies successfully precompiled in 137 seconds. 172 already precompiled. Precompiling packages... 19175.9 ms ✓ GPUArrays 6220.0 ms ✓ Zygote → ZygoteColorsExt 2 dependencies successfully precompiled in 26 seconds. 109 already precompiled. Precompiling packages... 1480.3 ms ✓ ColorVectorSpace → SpecialFunctionsExt 1 dependency successfully precompiled in 2 seconds. 19 already precompiled. Precompiling packages... 4857.2 ms ✓ FileIO → HTTPExt 14729.6 ms ✓ Plots → FileIOExt 2 dependencies successfully precompiled in 21 seconds. 179 already precompiled. ┌ Warning: No functional GPU backend found! Defaulting to CPU. │ │ 1. If no GPU is available, nothing needs to be done. │ 2. If GPU is available, load the corresponding trigger package. │ a. `CUDA.jl` and `cuDNN.jl` (or just `LuxCUDA.jl`) for NVIDIA CUDA Support. │ b. `AMDGPU.jl` for AMD GPU ROCM Support. │ c. `Metal.jl` for Apple Metal GPU Support. (Experimental) │ d. `oneAPI.jl` for Intel oneAPI GPU Support. (Experimental) └ @ MLDataDevices.Internal ~/.julia/packages/MLDataDevices/hoL1S/src/internal.jl:94 ┌ Warning: Layer with Float32 parameters got Float64 input. │ The input will be converted, but any earlier layers may be very slow. │ layer = Dense(3 => 1, σ) # 4 parameters │ summary(x) = "3×7000 adjoint(::Matrix{Float64}) with eltype Float64" └ @ Flux ~/.julia/packages/Flux/vwk6M/src/layers/stateless.jl:59 Final parameters are Float32[-1.9074494 1.3301988 -0.88434684 -3.4068043] Test accuracy is 0.9676666666666667 Final parameters are Float32[-0.3220262 2.666505 0.11137395 -5.837643] Test accuracy is 0.973 Test Summary: | Pass Fail Total Time EnergySamplers.jl | 22 1 23 15m10.1s Aqua.jl | 10 1 11 4m16.3s Unbound type parameters | 1 1 0.1s Undefined exports | 1 1 0.0s Compare Project.toml and test/Project.toml | 1 1 0.3s Stale dependencies | 1 1 13.4s Compat bounds | 4 4 0.7s Piracy | 1 1 0.2s Persistent tasks | 1 1 3m32.6s Samplers | 10 10 10m07.8s Other things | 2 2 0.8s RNG of the outermost testset: Xoshiro(0x6de2ee20e54eb224, 0x4bd941af970cac7d, 0xbde61b1e933896a6, 0x1688f2ff02fad964, 0xa4abdfc19f6b9a95) ERROR: LoadError: Some tests did not pass: 22 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/EnergySamplers/C1FbU/test/runtests.jl:4 Testing failed after 918.84s ERROR: LoadError: Package EnergySamplers errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2672 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2521 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:311 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [14] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1548.92s: package has test failures