Package evaluation of DiffEqBayes on Julia 1.13.0-DEV.974 (7bbb213719*) started at 2025-08-13T06:19:42.816 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.95s ################################################################################ # Installation # Installing DiffEqBayes... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [ebbdde9d] + DiffEqBayes v3.9.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.16.0 [621f4979] + AbstractFFTs v1.5.0 [80f14c24] + AbstractMCMC v5.7.2 ⌅ [7a57a42e] + AbstractPPL v0.12.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [0bf59076] + AdvancedHMC v0.8.0 [5b7e9947] + AdvancedMH v0.8.8 [576499cb] + AdvancedPS v0.7.0 [b5ca4192] + AdvancedVI v0.4.1 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.19.0 [4c555306] + ArrayLayouts v1.11.2 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.7 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [e2ed5e7c] + Bijections v0.2.2 [76274a88] + Bijectors v0.15.8 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.7.0 [70df07ce] + BracketingNonlinearSolve v1.3.0 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.15 [082447d4] + ChainRules v1.72.5 [d360d2e6] + ChainRulesCore v1.26.0 [0ca39b1e] + Chairmarks v1.3.1 [9e997f8a] + ChangesOfVariables v0.1.10 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 [861a8166] + Combinatorics v1.0.3 [a80b9123] + CommonMark v0.9.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.0 [5224ae11] + CompatHelperLocal v0.1.27 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [88cd18e8] + ConsoleProgressMonitor v0.1.2 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [b429d917] + DensityInterface v0.4.0 [2b5f629d] + DiffEqBase v6.183.0 [ebbdde9d] + DiffEqBayes v3.9.0 [459566f4] + DiffEqCallbacks v4.9.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.4 [8d63f2c5] + DispatchDoctor v0.4.26 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ced4e74d] + DistributionsAD v0.6.58 [ffbed154] + DocStringExtensions v0.9.5 [5b8099bc] + DomainSets v0.7.16 [bbc10e6e] + DynamicHMC v3.5.1 ⌅ [366bfd00] + DynamicPPL v0.36.15 [7c1d4256] + DynamicPolynomials v0.6.2 [06fc5a27] + DynamicQuantities v1.8.0 [cad2338a] + EllipticalSliceSampling v2.0.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.12 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7a1cc6ca] + FFTW v1.9.0 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.3 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [64ca27bc] + FindFirstFunctions v1.4.1 [6a86dc24] + 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 9.09s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 1915.35s ################################################################################ # Testing # Testing DiffEqBayes Status `/tmp/jl_Wy8s5X/Project.toml` [2b5f629d] DiffEqBase v6.183.0 [ebbdde9d] DiffEqBayes v3.9.0 [163ba53b] DiffResults v1.1.0 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [bbc10e6e] DynamicHMC v3.5.1 [f6369f11] ForwardDiff v1.0.1 [2ee39098] LabelledArrays v1.16.1 [996a588d] LogDensityProblemsAD v1.13.1 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [961ee093] ModelingToolkit v10.18.0 [429524aa] Optim v1.13.2 [1dea7af3] OrdinaryDiffEq v6.101.0 [90014a1f] PDMats v0.11.35 [65888b18] ParameterizedFunctions v5.18.0 [d96e819e] Parameters v0.12.3 [731186ca] RecursiveArrayTools v3.37.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [1bc83da4] SafeTestsets v0.1.0 [53ae85a6] SciMLStructures v1.7.0 ⌃ [c1514b29] StanSample v7.1.1 [2913bbd2] StatsBase v0.34.6 [9672c7b4] SteadyStateDiffEq v2.5.0 [09ab397b] StructArrays v0.7.1 [84d833dd] TransformVariables v0.8.17 [f9bc47f6] TransformedLogDensities v1.1.1 [fce5fe82] Turing v0.39.10 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [44cfe95a] Pkg v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Wy8s5X/Manifest.toml` [47edcb42] ADTypes v1.16.0 [621f4979] AbstractFFTs v1.5.0 [80f14c24] AbstractMCMC v5.7.2 ⌅ [7a57a42e] AbstractPPL v0.12.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [0bf59076] AdvancedHMC v0.8.0 [5b7e9947] AdvancedMH v0.8.8 [576499cb] AdvancedPS v0.7.0 [b5ca4192] AdvancedVI v0.4.1 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.19.0 [4c555306] ArrayLayouts v1.11.2 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [e2ed5e7c] Bijections v0.2.2 [76274a88] Bijectors v0.15.8 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] BlockArrays v1.7.0 [70df07ce] BracketingNonlinearSolve v1.3.0 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.15 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.26.0 [0ca39b1e] Chairmarks v1.3.1 [9e997f8a] ChangesOfVariables v0.1.10 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [861a8166] Combinatorics v1.0.3 [a80b9123] CommonMark v0.9.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.0 [5224ae11] CompatHelperLocal v0.1.27 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [b429d917] DensityInterface v0.4.0 [2b5f629d] DiffEqBase v6.183.0 [ebbdde9d] DiffEqBayes v3.9.0 [459566f4] DiffEqCallbacks v4.9.0 [77a26b50] DiffEqNoiseProcess v5.24.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.4 [8d63f2c5] DispatchDoctor v0.4.26 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ced4e74d] DistributionsAD v0.6.58 [ffbed154] DocStringExtensions v0.9.5 [5b8099bc] DomainSets v0.7.16 [bbc10e6e] DynamicHMC v3.5.1 ⌅ [366bfd00] DynamicPPL v0.36.15 [7c1d4256] DynamicPolynomials v0.6.2 [06fc5a27] DynamicQuantities v1.8.0 [cad2338a] EllipticalSliceSampling v2.0.0 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.12 [d4d017d3] ExponentialUtilities v1.27.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7a1cc6ca] FFTW v1.9.0 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.0.2 [a4df4552] FastPower v1.1.3 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [64ca27bc] FindFirstFunctions v1.4.1 [6a86dc24] FiniteDiff v2.27.0 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.0.1 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [c145ed77] GenericSchur v0.5.5 [c27321d9] Glob v1.3.1 [86223c79] Graphs v1.13.0 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [3263718b] ImplicitDiscreteSolve v1.2.0 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.4 [18e54dd8] IntegerMathUtils v0.1.3 [a98d9a8b] Interpolations v0.16.1 [8197267c] IntervalSets v0.7.11 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 [98e50ef6] JuliaFormatter v2.1.6 ⌅ 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libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!. └ @ StanBase ~/.julia/packages/StanBase/IgV1g/src/StanBase.jl:52 Precompiling packages... 6076.8 ms ✓ PreallocationTools 37650.4 ms ✓ ExponentialUtilities 12230.7 ms ✓ LinearSolve → LinearSolveForwardDiffExt 12125.1 ms ✓ OrdinaryDiffEqStabilizedRK 8056.1 ms ✓ OrdinaryDiffEqFunctionMap 64554.0 ms ✓ OrdinaryDiffEqVerner 9242.7 ms ✓ OrdinaryDiffEqQPRK 9565.8 ms ✓ OrdinaryDiffEqSymplecticRK 12592.7 ms ✓ OrdinaryDiffEqLowOrderRK 10092.4 ms ✓ OrdinaryDiffEqFeagin 11643.8 ms ✓ OrdinaryDiffEqSSPRK 9843.4 ms ✓ OrdinaryDiffEqRKN 9816.8 ms ✓ OrdinaryDiffEqHighOrderRK 9554.1 ms ✓ OrdinaryDiffEqExplicitRK 16842.0 ms ✓ OrdinaryDiffEqTsit5 10357.5 ms ✓ OrdinaryDiffEqPRK 12461.9 ms ✓ OrdinaryDiffEqLowStorageRK 7686.9 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 11578.6 ms ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 2139.1 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 5410.2 ms ✓ ExponentialUtilities → ExponentialUtilitiesStaticArraysExt 12008.4 ms ✓ OrdinaryDiffEqLinear 51021.8 ms ✓ NonlinearSolveFirstOrder 17005.2 ms ✓ OrdinaryDiffEqDifferentiation 9378.3 ms ✓ OrdinaryDiffEqAdamsBashforthMoulton 8800.7 ms ✓ OrdinaryDiffEqNordsieck 40610.9 ms ✓ NonlinearSolve 19481.1 ms ✓ OrdinaryDiffEqExtrapolation 47586.5 ms ✓ OrdinaryDiffEqRosenbrock 19433.6 ms ✓ OrdinaryDiffEqExponentialRK 20126.9 ms ✓ OrdinaryDiffEqNonlinearSolve 57864.5 ms ✓ OrdinaryDiffEqFIRK 18827.8 ms ✓ OrdinaryDiffEqIMEXMultistep 19148.4 ms ✓ OrdinaryDiffEqStabilizedIRK 20773.3 ms ✓ OrdinaryDiffEqPDIRK ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 399 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_70431.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_70431.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000070ede53153c0 Total snapshots: 143. Utilization: 0% ╎143 @Base/task.jl:1129 wait_forever() 142╎ 143 @Base/task.jl:1192 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1192 wait_forever at ./task.jl:1129 jfptr_wait_forever_70431.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4015 [inlined] ijl_apply_generic at /source/src/gf.c:4212 jl_apply at /source/src/julia.h:2375 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 32887823 (Pool: 32887122; Big: 701); GC: 28 [399] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/DiffEqBayes/CpDUh/test/dynamicHMC.jl:1 _ZN4llvm11ValueMapperD1Ev at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm9DbgMarker14EmptyDbgMarkerE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) unknown function (ip: (nil)) at (unknown file) Allocations: 50348734 (Pool: 50347752; Big: 982); GC: 61 PkgEval terminated after 2737.26s: test duration exceeded the time limit